Tasks page

This is a list of the Tasks PAN Blend is made of:

Table of contents

• Coherent-diffraction
• Control-systems
• Control-systems-dev
• Data-reduction-frameworks
• Data-reduction-frameworks-dev
• Diffraction
• Grazing-incidence
• Imaging
• Laue
• Machine-learning
• Modelling
• Mx
• Mx-dev
• Powder
• Small-angle-scattering
• Spectroscopy
• Tomography
• Xas

Coherent-diffraction - photons-and-neutrons coherent diffraction

This metapackage will install X-ray photons-and-neutrons PAN Blend coherent diffraction packages.

Official Debian packages with high relevance

Facet-analyser

??? missing short description for package facet-analyser :-(

Pynx

Python tools for Nano-structures Crystallography (Scripts)

Python3-pynx

Python tools for Nano-structures Crystallography (Python 3)

Packaging has started and developers might try the packaging code in VCS

Python3-moviepy

Video editing with Python

No known packages available

Bonsu

phase retrieval software package for real-time visualisation

Hawk

diffraction pattern reconstruction

Ptypy

Ptychography Reconstruction for Python

Control-systems - photons-and-neutrons control cystems

This metapackage will install X-ray photons-and-neutrons PAN packages related to control systems acquisition used in the PAN facilities.

Official Debian packages with high relevance

Epics-base

EPICS tools

Ghkl

diffractometer computation control application

Libepics-perl

EPICS perl module

Python3-pyepics

EPICS channel access for Python

Python3-sardana

instrument control and data acquisition system - library

Python3-tango

API for the TANGO control system (Python 3)

Python3-taurus

Framework for scientific/industrial CLIs and GUIs - Python3

Python3-taurus-pyqtgraph

Taurus extension providing pyqtgraph-based widgets (Python 3)

Tango-accesscontrol

TANGO distributed control system - accesscontrol server

Tango-db

TANGO distributed control system - database server

Tango-starter

TANGO distributed control system - starter server

Packaging has started and developers might try the packaging code in VCS

Micromanager

Microscopy Software

No known packages available

Opengda

framework for creating customised data acquisition software for science

Tomographie-preexperiment-data-collector

gather all information from the user that can be

Control-systems-dev - photons-and-neutrons control system development packages

This metapackage will install X-ray photons-and-neutrons PAN packages which might be helpful for development of applications related to control system acquisition.

You might also be interested in the control-system metapackage.

Official Debian packages with high relevance

Epics-dev

EPICS header files

Libepics-perl

EPICS perl module

Libhkl-dev

diffractometer computation control library - development files

Libtango-dev

TANGO distributed control system - development library

Python3-pyepics

EPICS channel access for Python

Python3-sardana

instrument control and data acquisition system - library

Python3-tango

API for the TANGO control system (Python 3)

Python3-taurus

Framework for scientific/industrial CLIs and GUIs - Python3

Python3-taurus-pyqtgraph

Taurus extension providing pyqtgraph-based widgets (Python 3)

No known packages available

Libuca

generic solution to access two-dimensional detectors

Lima

Library for Image Acquisition

Data-reduction-frameworks - photons-and-neutrons data reduction frameworks

This metapackage will install X-ray photons-and-neutrons PAN frameworks dedicated to the data reduction

Official Debian packages with high relevance

Admesh

Tool for processing triangulated solid meshes. Binary

Bcolz-doc

high performant compressed data container (documentation)

Bitshuffle

filter for improving compression of typed binary data

Clpeak

Profile OpenCL devices to find peak capacities

Fityk

general-purpose nonlinear curve fitting and data analysis

Gnuplot

Command-line driven interactive plotting program.

Grads

Grid Analysis and Display System for earth science data

H5utils

HDF5 files visualization tools

Hdf-compass

viewer for HDF5 and related formats

Hdf5-filter-plugin

external filters for HDF5: LZ4, BZip2, Bitshuffle

Hdf5-filter-plugin-blosc-serial

blocking, shuffling and lossless compression library

Hdf5-filter-plugin-zfp-serial

Compression plugin for the HDF5 library using ZFP compression

Hdf5-plugin-lzf

hdf5 plugin to lzf compression library

Hdf5-tools

HDF5 - Runtime tools

Imagej

Image processing program with a focus on microscopy images

Jupyter-notebook

Jupyter interactive notebook

Labplot

interactive graphing and analysis of scientific data

Libxrl-dev

library for interactions of X-rays with matter (headers)

Libxrl11

library for interactions of X-rays with matter

Libxy-bin

xylib - utilities

Looktxt

Convert free format text file into scientific data formats

Lz4

Fast LZ compression algorithm library - tool

Ngraph-gtk

create scientific 2-dimensional graphs

Octave

GNU Octave language for numerical computations

Pandoc

general markup converter

Pymca

Applications and toolkit for X-ray fluorescence analysis -- scripts

Python-agate-doc

documentation for agate

Python-dask-doc

Minimal task scheduling abstraction documentation

Python-ipywidgets-doc

Interactive widgets for the Jupyter notebook (documentation)

Python-mpi4py-doc

bindings of the MPI standard -- documentation

Python-skbio-doc

Data structures, algorithms, educational resources for bioinformatics (docs)

Python-skimage-doc

Documentation and examples for scikit-image

Python-sklearn-doc

documentation and examples for scikit-learn

Python-tables-doc

Hierarchical database for Python3 based on HDF5 (documentation)

Python3-agate

data analysis library optimized for human readability

Python3-bcolz

high performant compressed data container based on NumPy (Python 3)

Python3-codraft

Signal and image processing software

Python3-colorcet

set of useful perceptually uniform colormaps for plotting scientific data

Python3-colormap

ease manipulation of matplotlib colormaps and color codecs (Python 3)

Python3-cycler

composable kwarg iterator (Python 3)

Python3-dask

Minimal task scheduling abstraction for Python 3

Python3-descartes

Matplotlib extension to work with geometric objects (Python3)

Python3-extra-data

Tools to read and analyse data from European XFEL

Python3-gmplot

matplotlib-like interface to plotting data with Google Maps (python3)

Python3-graphviz

Simple Python 3 interface for Graphviz

Python3-h5netcdf

netCDF4 support via h5py for Python 3

Python3-h5py

general-purpose Python interface to hdf5

Python3-h5sparse

Scipy sparse matrix in HDF5

Python3-hdf5plugin

Python library to make HDF5 compression filters usable from h5py

Python3-hyperspy

interactive analysis of multidimensional datasets

Python3-ipyparallel

Interactive Parallel Computing with IPython (library & scripts)

Python3-ipywidgets

Interactive widgets for the Jupyter notebook (Python 3)

Python3-joypy

ridgeline-/joyplots plotting routine

Python3-leather

charting library for Python

Python3-matplotlib

Python based plotting system in a style similar to Matlab

Python3-mpi4py

bindings of the Message Passing Interface (MPI) standard

Python3-mpl-scatter-density

Fast scatter density plots for Matplotlib

Python3-mplcursors

Interactive data selection cursors for Matplotlib

Python3-mpld3

??? missing short description for package python3-mpld3 :-(

Python3-mplexporter

general matplotlib exporter

Python3-mpltoolkits.basemap

matplotlib toolkit to plot on map projections (Python 3)

Python3-netcdf4

Python 3 interface to the netCDF4 (network Common Data Form) library

Python3-numpy-groupies

performs operations on/with subsets of n-dim arrays

Python3-opencv

Python 3 bindings for the computer vision library

Python3-palettable

library of color palettes for Python (Python 3)

Python3-pandas

data structures for "relational" or "labeled" data

Python3-periodictable

Extensible periodic table of the elements (Python 3)

Python3-procrunner

Versatile utility function to run external processes from Python

Python3-pweave

scientific report generator for Python

Python3-pyct

Python packaging Common Tasks

Python3-pymatgen

Python Materials Genomics for materials analysis

Python3-pytest-mpl

pytest plugin for Matplotlib image comparison in Python 3

Python3-pyvkfft

??? missing short description for package python3-pyvkfft :-(

Python3-seaborn

statistical visualization library for Python3

Python3-skbio

Python3 data structures, algorithms, educational resources for bioinformatic

Python3-skimage

Python 3 modules for image processing

Python3-sklearn

Python modules for machine learning and data mining - Python 3

Python3-sklearn-pandas

Pandas integration with sklearn (Python 3)

Python3-tables

Hierarchical database for Python3 based on HDF5

Python3-tifffile

Read and write image data from and to TIFF files

Python3-traitlets

Lightweight Traits-like package for Python (Python 3 library)

Python3-xarray

N-D labeled arrays and datasets in Python 3

Python3-xraydb

X-ray Reference Data (Python 3)

Python3-zarr

chunked, compressed, N-dimensional arrays for Python

Qemu-web-desktop

Remote desktop service with virtual machines in a browser (DARTS).

Scilab

Scientific software package for numerical computations

Silx

Toolbox for X-Ray data analysis - Executables

Spyder3

Python IDE for scientists

Texlive-science

??? missing short description for package texlive-science :-(

Tifffile

Read and write image data from and to TIFF files

View3dscene

VRML / X3D browser, and a viewer for other 3D model formats

Vistrails

??? missing short description for package vistrails :-(

Vitables

graphical tool to browse and edit PyTables and HDF5 files

Xmaxima

Computer algebra system -- x interface

Xpython

Native jupyter kernel for python (binary)

Zstd

fast lossless compression algorithm -- CLI tool

No known packages available but some record of interest (WNPP bug)

Thredds

The THREDDS Data Server (TDS) is a web server that

No known packages available

Dawn

general purpose data acquisition and processing

Disp

Diffraction Image Statistics Package for R

Edna

Framework to build online data analysis programs

Graphlab

A New Parallel Framework for Machine Learning

Gumtree

general purpose data acq and processing

Mantid

?

Nexpy

A Python GUI to analyze NeXus data

Data-reduction-frameworks-dev - photons-and-neutrons data reduction framework development packages

This metapackage will install X-ray photons-and-neutrons PAN frameworks dedicated to data reduction development.

Official Debian packages with high relevance

Libmgl-dev

library for scientific graphs (development files)

Libnexus-dev

NeXus scientific data file format - development libraries

Pan-data-reduction-frameworks

Data reduction frameworks

Diffraction - photons-and-neutrons diffraction

This metapackage will install all X-ray photons-and-neutrons PAN diffraction software

Official Debian packages with high relevance

Binoculars

Surface X-ray diffraction 2D detector data reduction

Binoculars-doc

Surface X-ray diffraction 2D detector data reduction - Documentation

Cif2hkl

Convert crystallographic descriptions into HKL F^2 reflection lists

Debichem-crystallography

DebiChem crystallography

Density-fitness

Calculates per-residue electron density scores

Dioptas

GUI for reduction and exploration of X-ray diffraction images

Fityk

general-purpose nonlinear curve fitting and data analysis

Gcrystal

lightweight crystal structures visualizer

Ghkl

diffractometer computation control application

Gir1.2-hkl-5.0

diffractometer computation control library - gir binding

Libccp4-data

CCP4 core functionality - common files

Libccp4-dev

CCP4 core functionality - development files

Libhkl-dev

diffractometer computation control library - development files

Libhkl-doc

diffractometer computation control library - documentation

Libxy-bin

xylib - utilities

Libxy-dev

xylib development files

Objcryst-fox

Free Objects for Xtallography

Pyfai

Fast Azimuthal Integration scripts

Python-pyfai-doc

Fast Azimuthal Integration scripts - Documentation

Python-silx-doc

Toolbox for X-Ray data analysis - Documentation

Python-xrayutilities-doc

X-rays data reduction and analysis (documentation)

Python3-binoculars

Surface X-ray diffraction 2D detector data reduction - Python3

Python3-codraft

Signal and image processing software

Python3-denss

calculate electron density from a solution scattering profile

Python3-dials-data

Python data files used for regression tests in DIALS, dxtbx, xia2

Python3-pyfai

Fast Azimuthal Integration scripts - Python3

Python3-pyobjcryst

Object-Oriented Crystallographic Library bindings (Python 3)

Python3-pyxrd

modeling of X-ray diffraction (XRD) patterns of disordered lamellar structures

Python3-silx

??? missing short description for package python3-silx :-(

Python3-xrayutilities

X-rays data reduction and analysis (Python 3)

Silx

Toolbox for X-Ray data analysis - Executables

Official Debian packages with lower relevance

Nebula

performant, scalable network overlay

Pynx

Python tools for Nano-structures Crystallography (Scripts)

Packaging has started and developers might try the packaging code in VCS

Python3-moviepy

Video editing with Python

Grazing-incidence - photons-and-neutrons grazing incidence diffraction

This metapackage will install all X-ray photons-and-neutrons PAN packages for GID, GIXD, GIND, GISAS, GISAXS, GISANS software

Official Debian packages with high relevance

Binoculars

Surface X-ray diffraction 2D detector data reduction

Bornagain

Simulate and fit X-ray and neutron GISAS -- binary

Bornagain-doc

Simulate and fit X-ray and neutron GISAS -- doc

Python-xrayutilities-doc

X-rays data reduction and analysis (documentation)

Python3-bornagain

Simulate and fit X-ray and neutron GISAS -- Python3

Python3-denss

calculate electron density from a solution scattering profile

Python3-genx

differential evolution algorithm for fitting

Python3-refnx

Neutron and X-ray Reflectometry Analysis in Python

Python3-xrayutilities

X-rays data reduction and analysis (Python 3)

Packaging has started and developers might try the packaging code in VCS

Python3-moviepy

Video editing with Python

No known packages available

Fitgisaxs

?

Gsas

?

Isgisaxs

gisaxs -- diffraction

Imaging - photons-and-neutrons imaging

This metapackage will install all X-ray photons-and-neutrons PAN imaging software

Official Debian packages with high relevance

3depict

visualisation and analysis for single valued point data

Astro-frameworks

Astronomical data analysis frameworks

Astro-gdl

IDL/GDL packages for astronomy

Astro-python3

Python 3 packages for astronomy

Astropy-utils

Command line tools from astropy

Facet-analyser

??? missing short description for package facet-analyser :-(

G3data

??? missing short description for package g3data :-(

Giza-dev

Lightweight scientific plotting library (development files)

Gmsh

Three-dimensional finite element mesh generator

Gnudatalanguage

Free IDL compatible incremental compiler

Gnuplot

Command-line driven interactive plotting program.

Gphoto2

digital camera command-line client

Grace

XY graphing and plotting tool

Graphviz

rich set of graph drawing tools

Gri

a language for scientific illustration

Gwyddion

Scanning Probe Microscopy visualization and analysis tool

Ifrit

powerful tool for visualizing 3-dimensional data sets

Imagej

Image processing program with a focus on microscopy images

Imview

Image viewing and analysis application

Kst

scientific data plotting tool

Mantis-xray

Multivariate ANalysis Tool for x-ray Spectromicroscopy

Mayavi2

scientific visualization package for 2-D and 3-D data

Med-imaging

Debian Med image processing and visualization packages

Ovito

??? missing short description for package ovito :-(

Paraview

Parallel Visualization Application

Pdl

perl data language: Perl extensions for numerics

Plotdrop

minimal GNOME frontend to GNUPlot

Python3-aplpy

Astronomical Plotting Library in Python

Python3-astroml

Python 3 Machine Learning library for astronomy

Python3-astroml-addons

Python 3 Machine Learning library for astronomy (performance addons)

Python3-astropy

Core functionality for performing astrophysics with Python

Python3-cartopy

Cartographic library for Python 3

Python3-cpl

Control pipeline recipes from the ESO (Python3)

Python3-fitsio

Python 3 library to read from and write to FITS files

Python3-gammapy

Python package for gamma-ray astronomy

Python3-gdl

Python interface for the GNU Data Language

Python3-gnuplot

Python interface to the gnuplot plotting program

Python3-guiqwt

efficient 2D data-plotting library - Python 3

Python3-hyperspy

interactive analysis of multidimensional datasets

Python3-imexam

Simple interactive astronomical image examination and plotting

Python3-napari

n-dimensional array viewer in Python

Python3-olefile

Python module to read/write MS OLE2 files

Python3-photutils

Astropy affiliated package for image photometry (Python 3)

Python3-pyqtgraph

Scientific Graphics and GUI Library for Python 3

Python3-seaborn

statistical visualization library for Python3

Python3-skimage

Python 3 modules for image processing

Python3-specutils

Base classes and utilities for astronomical spectra in Python

Python3-vispy

interactive visualization in Python 3

Python3-wcsaxes

??? missing short description for package python3-wcsaxes :-(

Python3-willow

Python image library combining Pillow, Wand and OpenCV (Python 3)

Qtiplot

data analysis and scientific plotting

Rasmol

visualization of biological macromolecules

Relion

toolkit for 3D reconstructions in cryo-electron microscopy

Relion-gui

toolkit for 3D reconstructions in cryo-electron microscopy (gui apps)

Sextractor

??? missing short description for package sextractor :-(

Threeb

3B Microscopy Analysis Software - command-line tool

Threeb-imagej

3B Microscopy Analysis Software - ImageJ plugin

Veusz

2D and 3D scientific plotting application with graphical interface

Debian packages in contrib or non-free

Relion-cuda

parallel toolkit for 3D reconstructions in cryo-electron microscopy

Relion-gui-cuda

toolkit for 3D reconstructions in cryo-electron microscopy (gui apps)

Packaging has started and developers might try the packaging code in VCS

Python3-moviepy

Video editing with Python

Laue - photons-and-neutrons Laue diffraction

This metapackage will install all X-ray photons-and-neutrons PAN Laue software

No known packages available

Esmeralda

Esmeralda Laue Suite

Machine-learning - photons-and-neutrons machine learning

This metapackage will install all the machine learning software for X-ray photons-and-neutrons PAN

Official Debian packages with high relevance

Keras-doc

CPU/GPU math expression compiler for Python (docs)

Libopencv-dnn-dev

development files for libopencv-dnn406t64

Libopencv-dnn4.5

computer vision Deep neural network module

Libtorch-test

Tensors and Dynamic neural networks in Python (Test Binaries)

Libtorch-thnn

libTHNN.so of Neural Network Package for Torch Framework

Python-tpot-doc

documentation and examples for TPOT

Python3-brian

simulator for spiking neural networks

Python3-eagerpy

Wrapper around various Python multidimensional array types

Python3-keras

deep learning framework running on Theano or TensorFlow

Python3-keras-applications

popular models and pre-trained weights for the Keras deep learning framework

Python3-keras-preprocessing

data preprocessing module for the Keras deep learning framework

Python3-lasagne

deep learning library build on the top of Theano (Python3 modules)

Python3-mdp

Modular toolkit for Data Processing

Python3-onnx

Open Neural Network Exchange (ONNX) (Python)

Python3-pyclustering

Data mining algorithms (Python 3)

Python3-sklearn

Python modules for machine learning and data mining - Python 3

Python3-skorch

scikit-learn compatible neural network library that wraps PyTorch

Python3-torch

Tensors and Dynamic neural networks in Python (Python Interface)

Python3-torch-ignite

High-level library to help with training and evaluating in PyTorch

Python3-tpot

Automated Machine Learning tool built on top of scikit-learn

Debian packages in contrib or non-free

Python3-torch-cuda

Tensors and Dynamic neural networks in Python (Python Interface)

Modelling - photons-and-neutrons modelling

This metapackage will install all modelling software for X-ray photons-and-neutrons PAN

Official Debian packages with high relevance

Debichem-analytical-biochemistry

DebiChem Analytical BioChemistry

Debichem-cheminformatics

DebiChem Cheminformatics

Debichem-development

DebiChem C/C++/Fortran Development

Debichem-input-generation-output-processing

DebiChem input preparation and output processing

Debichem-molecular-abinitio

DebiChem Molecular Ab Initio Calculations

Debichem-molecular-dynamics

DebiChem Molecular Dynamics

Debichem-molecular-modelling

DebiChem 3D Molecular Modelling and Visualization

Debichem-periodic-abinitio

DebiChem Periodic Ab Initio Calculations

Debichem-semiempirical

DebiChem Semi Empirical

Debichem-visualisation

DebiChem 3D Viewers

Libncrystal-bin

Monte Carlo simulations of neutrons in crystals (utilities)

Mcpl

Monte Carlo Particle Lists - libraries and tools

Mcstas

Neutron ray-trace simulation

Mcstas-comps

Neutron ray-trace simulation - components

Mcxtrace

X-ray ray-trace simulation

Mcxtrace-comps

X-ray ray-trace simulation - components

Python3-phonopy

phonon calculations at harmonic and quasi-harmonic levels (Python 3)

Python3-pymatgen

Python Materials Genomics for materials analysis

Python3-xrt

XRay Tracer and wave propagation (Python 3)

Quantum-espresso-data-sssp

Standard solid-state pseudopotentials (SSSP) library

Debian packages in contrib or non-free

Mumax3

GPU-accelerated micromagnetic simulator

Mx - photons-and-neutrons macro molecular diffraction

This metapackage will install all MX diffraction software for X-ray photons-and-neutrons PAN.

Official Debian packages with high relevance

Apbs

Adaptive Poisson Boltzmann Solver

Autodock

analysis of ligand binding to protein structure

Clustalw

global multiple nucleotide or peptide sequence alignment

Dials

Diffraction Integration for Advanced Light Sources

Gnuplot

Command-line driven interactive plotting program.

Imagej

Image processing program with a focus on microscopy images

Jmol

Molecular Viewer

Libmmdb2-0

macromolecular coordinate library - runtime

Openbabel

Chemical toolbox utilities (cli)

Povray

Persistence of vision raytracer (3D renderer)

Pymol

Molecular Graphics System

Python3-cctbx

Python Toolbox for crystallography

Python3-dials

Diffraction Integration for Advanced Light Sources - Python3

Python3-dials-data

Python data files used for regression tests in DIALS, dxtbx, xia2

Python3-extra-data

Tools to read and analyse data from European XFEL

Python3-mrcfile

Python implementation of the MRC2014 file format

Python3-nxmx

Read HDF5 data in the NXmx subformat of the NeXus format

Rasmol

visualization of biological macromolecules

Raster3d

tools for generating images of proteins or other molecules

Theseus

superimpose macromolecules using maximum likelihood

Official Debian packages with lower relevance

Coot

model building program for macromolecular crystallography

Gemmi

library for structural biology - executable

Packaging has started and developers might try the packaging code in VCS

Crystfel

Suite of programs for processing "serial" diffraction data "snapshots"

Nmoldyn

?

Rosetta

molecular biophysics for structural biology

Unofficial packages built by somebody else

Evrouter

?

No known packages available

3dna

3DNA is a versatile, integrated software system for

Adxv

The principal application of adxv is to display

Aimless

This program scales together multiple observations of

Albula

Dectris diffraction image viewer and analysis tool

Aplx

?

Atsas

?

Autoproc

MX data processing

Balbes

BALBES is a system for solving protein structures

Best

optimal planning of X-ray data collection from protein crystals

Biox-xds

?

Bioxhit

?

Bobscript

?

Bp3-old

?

C3d

?

Cath

CATH is a manually curated classification of protein

Ccp4

CCP4 exists to produce and support a world-leading,

Chart

?

Chimera

UCSF Chimera is a highly extensible program for

Chooch

CHOOCH is a program that will automatically determine

Cn2coot

?

Cns

Crystallography & NMR System (CNS) is the result of

Crank

Crank [1] is a program to automate macromolecular

Das

The Distributed Annotation System (DAS) defines a

Dna

?

Domain-finder

DomainFinder is an interactive program for the

Dps2ar

The EMBL-Hamburg automated crystal structure

Dviewer

?

Dyndom3d

DynDom3D is a new program for the analysis of domain

Edna

Framework to build online data analysis programs

Edna

EDNA is a framework for developing plugin-based

Elves

?

Epmr

EPMR is a general-purpose molecular replacement

Escet

?

Fit2d

?

Fobscom

?

Gramm

?

Grasp

?

Harker

?

Hbplus

?

Hca

?

Hkl2map

?

Hyss

?

Imosflm

?

Induced-rad-dam

?

Ipymol

?

Ispyb-client

?

Labelit

?

Lam

?

Laue

?

Liged

?

Ligplot

?

Ligplus

?

Lscale

?

Maid

?

Main

?

Mar345

?

Marutils

?

Mercury

?

Mlfsom

?

Molscriptmolscript-2.1.2

?

Mosflm

?

Msi

?

Nuccyl

?

Nucplot

?

Onoono80ono90

?

Phaser

?

Phases

?

Phenix

automated determination of macromolecular structures

Phenix

?

Pirate

?

Plotmtv

?

Pointless

?

Promotif

?

Pxpy

?

Raddose

?

Refmac

?

Replace

?

Ribbons

?

Ringer

?

Rmerge

?

Rtools

?

Saxs

?

Shakerr

?

Sharp

?

Shelx

?SHELX is a set of programs for crystal structure

Sir

?

Sir2002

?

Snb2.2

?

Snow

?

Solvesolve-2.08

?

Stac-stac2

?

Strategy

?

Surfnet

?

Tcltkblt

?

Testcase

?

Textal

?

Tools

?

Tops

?

Usf

?

Viewhkl

?

Wink

?

Workflow-ds

?

Workflow-executor

?

Xds

?

Xdsme

XDS Made Easier

Xiaxia2

?

Xprep

?

Xrec

?

Xtalview

?

Mx-dev - photons-and-neutrons macro-molecular diffraction development packages

This metapackage will install X-ray photons-and-neutrons PAN packages which might be helpful for development of applications related to Macro-Molecular diffraction.

You might also be interested in the mx metapackage.

Official Debian packages with lower relevance

Libccp4-dev

CCP4 core functionality - development files

Libclipper-dev

object oriented development kit for crystallographic computing

Libmmdb-dev

??? missing short description for package libmmdb-dev :-(

Libssm-dev

macromolecular superposition library - development files

Packaging has started and developers might try the packaging code in VCS

Libccif-dev

<insert up to 60 chars description>

Powder - photons-and-neutrons powder diffraction

This metapackage will install all X-ray photons-and-neutrons PAN powder diffraction software.

Official Debian packages with high relevance

Cif2hkl

Convert crystallographic descriptions into HKL F^2 reflection lists

Dioptas

GUI for reduction and exploration of X-ray diffraction images

Fityk

general-purpose nonlinear curve fitting and data analysis

Libxy-bin

xylib - utilities

Objcryst-fox

Free Objects for Xtallography

Pyfai

Fast Azimuthal Integration scripts

Python3-codraft

Signal and image processing software

Python3-pyxrd

modeling of X-ray diffraction (XRD) patterns of disordered lamellar structures

Spd

Synchrotron image corrections and azimuthal integration

No known packages available

Fullprof

?

Jpowder

Lightweight powder diffraction data visualizer

Pygsas

crystallography multi purpose python library

Pyxrd

matrix algorithm for X-ray diffraction patterns

Xrdua

X-ray Powder Diffraction

Small-angle-scattering - photons-and-neutrons small angle scattering

This metapackage will install all X-ray photons-and-neutrons PAN Blend small angle scattering packages.

Official Debian packages with high relevance

Dioptas

GUI for reduction and exploration of X-ray diffraction images

Fityk

general-purpose nonlinear curve fitting and data analysis

Pyfai

Fast Azimuthal Integration scripts

Python-sasmodels-doc

Theoretical models for small angle scattering (documentation)

Python3-bioxtasraw

process biological small angle scattering data

Python3-denss

calculate electron density from a solution scattering profile

Python3-freesas

Python libraries for small angle scattering tools

Python3-sasmodels

Theoretical models for small angle scattering (Python 3)

Python3-sasview

Small Angle Scattering Analysis

Sasmodels-private-libs

Theoretical models for small angle scattering (compiled models)

Sasview

Small Angle Scattering Analysis suite

Sasview-doc

Small Angle Scattering Analysis (documentation)

Spd

Synchrotron image corrections and azimuthal integration

No known packages available

Bsl

small angle scattering

Diffraction-ring-profiler

A program for extracting electron diffraction ring pattern profiles

Sastbx

Small angle scattering

Saxsview

?

Spectroscopy - photons-and-neutrons spectroscopy

This metapackage will install all X-ray photons-and-neutrons PAN spectroscopy packages (XPS, ARPES, IXS, ...).

Official Debian packages with high relevance

Dmrgpp

Density matrix renormalization group algorithm

Etsf-io

Binary tools to check, merge and read ETSF files

Mantis-xray

Multivariate ANalysis Tool for x-ray Spectromicroscopy

Pymca

Applications and toolkit for X-ray fluorescence analysis -- scripts

Python3-arpys

ARPES (Angle Resolved PhotoEmission Spectroscopy) data analysis

Python3-codraft

Signal and image processing software

Python3-igor

read files written by WaveMetrics IGOR Pro

Python3-navarp

Navigation tool for ARPES data (Python 3)

Python3-orange-spectroscopy

Extends Orange to handle spectral and hyperspectral analysis

Python3-phonopy

phonon calculations at harmonic and quasi-harmonic levels (Python 3)

Python3-pyimagetool

Image Tool for multidimensional analysis (Python 3)

Python3-pymatgen

Python Materials Genomics for materials analysis

Python3-spectral

process hyperspectral imagery

Spview

Spectrum Viewer

Packaging has started and developers might try the packaging code in VCS

Python3-xrstools

x-ray Raman scattering tools (Python 3)

Tomography - photons-and-neutrons tomography

This metapackage will install all X-ray photons-and-neutrons PAN Blend tomography packages.

Official Debian packages with high relevance

Ctsim

Computed tomography simulator

Ctsim-doc

Documentation for ctsim package

Ctsim-help

Online help file for CTSim

Facet-analyser

??? missing short description for package facet-analyser :-(

Geomview

interactive geometry viewing program

Gir1.2-ufo-1.0

Library for high-performance, GPU-based computing - gir binding

Mayavi2

scientific visualization package for 2-D and 3-D data

Meshio-tools

command-line tools for meshio

Meshlab

??? missing short description for package meshlab :-(

Paraview

Parallel Visualization Application

Paraview-dev

Parallel Visualization Application. Development header files

Paraview-doc

Parallel Visualization Application. Comprehensive documentation

Plastimatch

medical image reconstruction and registration

Python3-freeart

Software library for X-Ray data analysis

Python3-nabu

ESRF tomography processing software

Python3-paraview

Parallel Visualization Application. python-support

Python3-skimage

Python 3 modules for image processing

Python3-tomogui

GUI for freeart and silx tomographic reconstructions

Python3-tomoscan

utility to access tomography data at esrf

Python3-ufo-tofu

Fast, versatile and user-friendly image processing toolkit

Python3-vispy

interactive visualization in Python 3

Rheolef

efficient Finite Element environment

Ufo-core-doc

Library for high-performance, GPU-based computing - documentation

Ufo-filters

Set of plugins for ufo-core - runtime

Ufo-filters-doc

Library for high-performance, GPU-based computing - documentation

Debian packages in contrib or non-free

Octave-astra-toolbox

toolbox of high-performance GPU primitives for 2D and 3D tomography (octave)

Python3-astra-toolbox

toolbox of high-performance GPU primitives for 2D and 3D tomography (Python3)

Python3-pyhst2-cuda

Python High Speed Tomographic reconstruction

Python3-tomopy

Python package for tomographic data processing and image reconstruction

No known packages available

Imagej-pluggins-tomo

?

Rabbitct

backprojection performance-comparison

Tomodata

conversion of files from nexus to edf, parameterization, reconstruction

Tomographie-preexperiment-data-collector

gather all information from the user that can be

Tomoj

TomoJ is an ImageJ plug-in for tomographic reconstruction.

Xas - photons-and-neutrons EXAFS and XANES

This metapackage will install all X-ray photons-and-neutrons PAN EXAFS and XANES absorption spectroscopy packages.

Official Debian packages with high relevance

Ifeffit

Interactive XAFS analysis program

Pymca

Applications and toolkit for X-ray fluorescence analysis -- scripts

Python3-xraylarch

X-ray absorption, fluorescence spectroscopy and diffraction data analysis

Quantum-espresso

Electronic-Structure and Ab-Initio Molecular Dynamics Suite

Debian packages in contrib or non-free

Horae

interactive graphical processing and analysis of EXAFS data

No known packages available

Prestopronto

Software for analysis of Quick Exafs data

Rixs

Sorting and visualization of 1D spectra: XAS, scan positions, etc. (Detailed specifications sent to S. Bac in April 2020)