Summary
xas
photons-and-neutrons EXAFS and XANES
This metapackage will install all X-ray photons-and-neutrons PAN EXAFS and
XANES absorption spectroscopy packages.
Description
For a better overview of the project's availability as a Debian package, each head row has a color code according to this scheme:
If you discover a project which looks like a good candidate for PAN Blend
to you, or if you have prepared an unofficial Debian package, please do not hesitate to
send a description of that project to the PAN Blend mailing list
Links to other tasks
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PAN Blend xas packages
Official Debian packages with high relevance
ifeffit
Interactive XAFS analysis program
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Versions of package ifeffit |
Release | Version | Architectures |
bookworm | 1.2.11d-12.5 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
trixie | 1.2.11d-12.6 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
jessie | 1.2.11d-9.1 (contrib) | amd64,i386 |
stretch | 1.2.11d-10.1 (contrib) | amd64,i386 |
sid | 1.2.11d-12.6 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
buster | 1.2.11d-10.2 (contrib) | amd64,i386 |
Debtags of package ifeffit: |
scope | application |
uitoolkit | ncurses |
x11 | application |
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License: DFSG free
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IFEFFIT is an interactive program for XAFS analysis. It combines the
high-quality analysis algorithms of AUTOBK and FEFFIT with graphical display
of XAFS data and general data manipulation.
IFEFFIT comes as a command-line program, but the underlying functionality is
available as a programming library. The IFEFFIT library can be used from C,
Fortran, Tcl, and Perl.
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pymca
Applications and toolkit for X-ray fluorescence analysis -- scripts
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Versions of package pymca |
Release | Version | Architectures |
bookworm | 5.8.0+dfsg-2 | all |
jessie | 4.7.4+dfsg-1 | amd64,armel,armhf,i386 |
stretch | 5.1.3+dfsg-1 | all |
buster | 5.4.3+dfsg-1 | all |
bullseye | 5.6.3+dfsg-1 | all |
bookworm-backports | 5.8.7+dfsg-2~bpo12+1 | all |
trixie | 5.9.3+dfsg-1 | all |
sid | 5.9.3+dfsg-1 | all |
upstream | 5.9.4 |
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License: DFSG free
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PyMca is set of applications and Python libraries for analysis of
X-ray fluorescence spectra.
The applications included in this package are:
- edfviewer - Display and inspection of data files in ESRF Data Format
- elementsinfo - Displays element specific X-ray data
- mca2edf - Converts files from SPEC MCA format to EDF
- peakidentifier - Displays X-ray fluorescence peaks in a given energy range
- pymcabatch - Batch fitting of spectra
- pymcapostbatch - Post-processing of batch fitting results
- pymca - Interactive data-analysis
- pymcaroitool - Region-of-interest (ROI) imaging tool
The PyMca toolkit can read data files in SPEC, ESRF data file (EDF),
OMNIC, HDF5, AIFIRA and SupaVisio formats.
This are the scripts of the package.
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python3-xraylarch
X-ray absorption, fluorescence spectroscopy and diffraction data analysis
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Versions of package python3-xraylarch |
Release | Version | Architectures |
bookworm | 0.9.58+ds1-5 | amd64 |
sid | 0.9.81+ds1-2 | amd64 |
trixie | 0.9.81+ds1-2 | amd64 |
upstream | 2025.1.1 |
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License: DFSG free
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Larch is a library and set of applications for processing and analyzing X-ray
absorption and fluorescence spectroscopy data and X-ray fluorescence and
diffraction image data from synchrotron beamlines.
Larch is especially focussed on X-ray absorption fine-structure spectroscopy
(XAFS) including X-ray absorption near-edge spectroscopy (XANES) and extended
X-ray absorption fine-structure spectroscopy (EXAFS). It also supports
visualization and analysis tools for X-ray fluorescence (XRF) spectra and XRF
and X-ray diffraction (XRD) images as collected at scanning X-ray microprobe
beamlines.
This package installs the larch module and scripts for Python 3.
- GSE MapViewer for GSECARS X-ray microprobe data.
- Larch CLI and Gtk GUI.
- XAS Viewer for XAFS Processing and Analysis.
- XRF Display to display and analyze XRF Spectra.
The Larch CLI is available as larch_cli in Debian.
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quantum-espresso
전자 구조 및 Ab-Initio Molecular Dynamics Suite
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Versions of package quantum-espresso |
Release | Version | Architectures |
trixie | 6.7-3 | amd64,arm64,armhf,i386,mips64el,ppc64el,riscv64,s390x |
sid | 6.7-3 | amd64,arm64,armhf,i386,mips64el,ppc64el,riscv64,s390x |
buster | 6.3-4 | amd64,arm64,armhf,i386 |
jessie | 5.1+dfsg-3 | amd64,armel,armhf,i386 |
stretch | 6.0-3 | amd64,arm64,armhf,i386,mips,mipsel,ppc64el,s390x |
bullseye | 6.7-2 | amd64,arm64,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bookworm | 6.7-2 | amd64,arm64,armhf,i386,mips64el,mipsel,ppc64el,s390x |
Debtags of package quantum-espresso: |
role | program |
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License: DFSG free
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Quantum ESPRESSO (이전에는 PWscf로 알려져 있음)은 나노스케일에서 전자 구조 계산 및 재료 모델링을 위한 통합 컴퓨터 코드 모음입니다. 밀도 함수 이론, 평면파, 의사 전위 (표준 보존, 울트라소프트, PAW 모두)를 기반으로 합니다
기능은 아래와 같습니다:
- 평면파 자체 일관된 총 에너지, 힘 및 응력을 사용해서 지상 상태 단일 지점 및 대역 구조 계산
- 분리가능한 표준 보존 및 울트라소프트 (밴더빌드) 의사 전위, PAW (Projector Augmented Waves)
- LDA 부터 일반화 기울기 보정 (PW91, PBE, B88-P86, BLYP), meta-GGA, 정확한 교환 (HF) 및
하이브리드 기능 (PBE0, B3LYP, HSE)
- Car-Parrinello 및 Born-Oppenheimer 분자 역학
- 전환 상태 및 최소 에너지 경로를 포함한 구조 최적화
- 스핀 궤도 결합 및 비공선 자기
- 포논 주파수 및 고유 벡터, 유효 전하 및 유전체 텐서, 적외선 및 라만 단면, EPR 및 NMR 화학적
이동을 포함한 응답 특성
- K- 및 L1-에지 X-ray 흡수 스펙트럼 (XAS) 및 전자 여기와 같은 분광 특성
Please cite:
P. Giannozzi, S. Baroni, N. Bonini, M. Calandra, R. Car, C. Cavazzoni, D. Ceresoli, G. L. Chiarotti, M. Cococcioni, I. Dabo, A. Dal Corso, S. Fabris, G. Fratesi, S. de Gironcoli, R. Gebauer, U. Gerstmann, C. Gougoussis, A. Kokalj, M. Lazzeri, L. Martin-Samos, N. Marzari, F. Mauri, R. Mazzarello, S. Paolini, A. Pasquarello, L. Paulatto, C. Sbraccia, S. Scandolo, G. Sclauzero, A. P. Seitsonen, A. Smogunov, P. Umari and R. M. Wentzcovitch:
QUANTUM ESPRESSO: a modular and open-source software project for quantum simulations of materials.
J. Phys. Condens. Matter
21:395502
(2009)
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Debian packages in contrib or non-free
horae
interactive graphical processing and analysis of EXAFS data
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Versions of package horae |
Release | Version | Architectures |
trixie | 071~svn537+ds1-1 (contrib) | all |
buster | 071~svn537-2.1 (contrib) | all |
stretch | 071~svn537-2.1 (contrib) | all |
sid | 071~svn537+ds1-1 (contrib) | all |
bookworm | 071~svn537+ds1-1 (contrib) | all |
Debtags of package horae: |
field | chemistry, physics |
role | program |
x11 | application |
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License: DFSG free, but needs non-free components
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ATHENA is an interactive graphical utility for processing EXAFS data. It
handles most of the common data handling chores of interest, including
deglitching, aligning, merging, background removal, and Fourier transforms.
ARTEMIS is an interactive graphical utility for fitting EXAFS data using
theoretical standards from FEFF and sophisticated data modelling along with
flexible data visualization and statistical analysis.
HEPHAESTUS is a souped up periodic table for the x-ray absorption
spectroscopist. It provides a number of utilities involving tables of
absorption coefficients and other chemical data.
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No known packages available
prestopronto
Software for analysis of Quick Exafs data
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License: GPL3+
Debian package not available
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rixs
Sorting and visualization of 1D spectra: XAS, scan positions, etc. (Detailed specifications sent to S. Bac in April 2020)
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License: ?
Debian package not available
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Visualization of contextual data (energy and polarization of the line, resolution, sample and spectrometer positions)
Processing of CCD images to extract RIXS spectra: application of thresholds, extraction of the curvature (by Gaussian fit) necessary to sum the
CCD lines after linear interpolation.
Visualization of the RIXS spectra and construction of RIXS maps in two representations: Emission Energy and Energy Loss.
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