Summary
xas
photons-and-neutrons EXAFS and XANES
This metapackage will install all X-ray photons-and-neutrons PAN EXAFS and
XANES absorption spectroscopy packages.
Description
For a better overview of the project's availability as a Debian package, each head row has a color code according to this scheme:
If you discover a project which looks like a good candidate for PAN Blend
to you, or if you have prepared an unofficial Debian package, please do not hesitate to
send a description of that project to the PAN Blend mailing list
Links to other tasks
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PAN Blend xas packages
Official Debian packages with high relevance
ifeffit
Interactive XAFS analysis program
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Versions of package ifeffit |
Release | Version | Architectures |
bookworm | 1.2.11d-12.5 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
trixie | 1.2.11d-12.6 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
jessie | 1.2.11d-9.1 (contrib) | amd64,i386 |
stretch | 1.2.11d-10.1 (contrib) | amd64,i386 |
sid | 1.2.11d-12.6 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
buster | 1.2.11d-10.2 (contrib) | amd64,i386 |
Debtags of package ifeffit: |
scope | application |
uitoolkit | ncurses |
x11 | application |
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License: DFSG free
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IFEFFIT is an interactive program for XAFS analysis. It combines the
high-quality analysis algorithms of AUTOBK and FEFFIT with graphical display
of XAFS data and general data manipulation.
IFEFFIT comes as a command-line program, but the underlying functionality is
available as a programming library. The IFEFFIT library can be used from C,
Fortran, Tcl, and Perl.
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pymca
Applications and toolkit for X-ray fluorescence analysis -- scripts
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Versions of package pymca |
Release | Version | Architectures |
bookworm | 5.8.0+dfsg-2 | all |
jessie | 4.7.4+dfsg-1 | amd64,armel,armhf,i386 |
stretch | 5.1.3+dfsg-1 | all |
buster | 5.4.3+dfsg-1 | all |
bullseye | 5.6.3+dfsg-1 | all |
bookworm-backports | 5.8.7+dfsg-2~bpo12+1 | all |
trixie | 5.9.3+dfsg-1 | all |
sid | 5.9.3+dfsg-1 | all |
upstream | 5.9.4 |
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License: DFSG free
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PyMca is set of applications and Python libraries for analysis of
X-ray fluorescence spectra.
The applications included in this package are:
- edfviewer - Display and inspection of data files in ESRF Data Format
- elementsinfo - Displays element specific X-ray data
- mca2edf - Converts files from SPEC MCA format to EDF
- peakidentifier - Displays X-ray fluorescence peaks in a given energy range
- pymcabatch - Batch fitting of spectra
- pymcapostbatch - Post-processing of batch fitting results
- pymca - Interactive data-analysis
- pymcaroitool - Region-of-interest (ROI) imaging tool
The PyMca toolkit can read data files in SPEC, ESRF data file (EDF),
OMNIC, HDF5, AIFIRA and SupaVisio formats.
This are the scripts of the package.
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python3-xraylarch
X-ray absorption, fluorescence spectroscopy and diffraction data analysis
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Versions of package python3-xraylarch |
Release | Version | Architectures |
bookworm | 0.9.58+ds1-5 | amd64 |
sid | 0.9.81+ds1-2 | amd64 |
trixie | 0.9.81+ds1-2 | amd64 |
upstream | 2025.1.1 |
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License: DFSG free
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Larch is a library and set of applications for processing and analyzing X-ray
absorption and fluorescence spectroscopy data and X-ray fluorescence and
diffraction image data from synchrotron beamlines.
Larch is especially focussed on X-ray absorption fine-structure spectroscopy
(XAFS) including X-ray absorption near-edge spectroscopy (XANES) and extended
X-ray absorption fine-structure spectroscopy (EXAFS). It also supports
visualization and analysis tools for X-ray fluorescence (XRF) spectra and XRF
and X-ray diffraction (XRD) images as collected at scanning X-ray microprobe
beamlines.
This package installs the larch module and scripts for Python 3.
- GSE MapViewer for GSECARS X-ray microprobe data.
- Larch CLI and Gtk GUI.
- XAS Viewer for XAFS Processing and Analysis.
- XRF Display to display and analyze XRF Spectra.
The Larch CLI is available as larch_cli in Debian.
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quantum-espresso
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Versions of package quantum-espresso |
Release | Version | Architectures |
trixie | 6.7-3 | amd64,arm64,armhf,i386,mips64el,ppc64el,riscv64,s390x |
sid | 6.7-3 | amd64,arm64,armhf,i386,mips64el,ppc64el,riscv64,s390x |
buster | 6.3-4 | amd64,arm64,armhf,i386 |
jessie | 5.1+dfsg-3 | amd64,armel,armhf,i386 |
stretch | 6.0-3 | amd64,arm64,armhf,i386,mips,mipsel,ppc64el,s390x |
bullseye | 6.7-2 | amd64,arm64,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bookworm | 6.7-2 | amd64,arm64,armhf,i386,mips64el,mipsel,ppc64el,s390x |
Debtags of package quantum-espresso: |
role | program |
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License: DFSG free
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Quantum ESPRESSO(以前は PWscf という名前でした)は、電子構造計算および
ナノスケールの材料モデリング用の一連のコンピュータコードです。密度汎関数法
および平面波基底、擬ポテンシャル(ノルム保存、ウルトラソフト、PAWの全て)に
基いています。
次のような機能があります。
- 平面波基底を用いた基底状態一点計算によるバンド構造計算、自己無撞着
エネルギー計算、力および応力
- 分離可能型ノルム保存擬ポテンシャルおよび(Vanderbiltの)ウルトラソフト
擬ポテンシャル、PAW (Projector Augmented Waves)
- LDA から GGA (PW91, PBE, B88-P86, BLYP) やメタ GGA、厳密交換相互作用
(HF)、ハイブリッド汎関数 (PBE0, B3LYP, HSE) に至るまでの様々な交換相関
汎関数
- カー・パリネロ分子動力学法およびボルン・オッペンハイマー分子動力学法
- 遷移状態および最小エネルギーパスを含む構造最適化
- スピン軌道相互作用および非共線的磁気構造
- フォノン周波数および固有ベクトルや、有効電荷、誘電テンソル、赤外および
ラマン散乱断面積、EPR および NMR 化学シフトなどの応答特性
- X線吸光スペクトル (XAS) におけるK吸収端およびL1吸収端や電子励起などの
スペクトル特性
Please cite:
P. Giannozzi, S. Baroni, N. Bonini, M. Calandra, R. Car, C. Cavazzoni, D. Ceresoli, G. L. Chiarotti, M. Cococcioni, I. Dabo, A. Dal Corso, S. Fabris, G. Fratesi, S. de Gironcoli, R. Gebauer, U. Gerstmann, C. Gougoussis, A. Kokalj, M. Lazzeri, L. Martin-Samos, N. Marzari, F. Mauri, R. Mazzarello, S. Paolini, A. Pasquarello, L. Paulatto, C. Sbraccia, S. Scandolo, G. Sclauzero, A. P. Seitsonen, A. Smogunov, P. Umari and R. M. Wentzcovitch:
QUANTUM ESPRESSO: a modular and open-source software project for quantum simulations of materials.
J. Phys. Condens. Matter
21:395502
(2009)
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Debian packages in contrib or non-free
horae
interactive graphical processing and analysis of EXAFS data
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Versions of package horae |
Release | Version | Architectures |
trixie | 071~svn537+ds1-1 (contrib) | all |
buster | 071~svn537-2.1 (contrib) | all |
stretch | 071~svn537-2.1 (contrib) | all |
sid | 071~svn537+ds1-1 (contrib) | all |
bookworm | 071~svn537+ds1-1 (contrib) | all |
Debtags of package horae: |
field | chemistry, physics |
role | program |
x11 | application |
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License: DFSG free, but needs non-free components
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ATHENA is an interactive graphical utility for processing EXAFS data. It
handles most of the common data handling chores of interest, including
deglitching, aligning, merging, background removal, and Fourier transforms.
ARTEMIS is an interactive graphical utility for fitting EXAFS data using
theoretical standards from FEFF and sophisticated data modelling along with
flexible data visualization and statistical analysis.
HEPHAESTUS is a souped up periodic table for the x-ray absorption
spectroscopist. It provides a number of utilities involving tables of
absorption coefficients and other chemical data.
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No known packages available
prestopronto
Software for analysis of Quick Exafs data
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License: GPL3+
Debian package not available
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rixs
Sorting and visualization of 1D spectra: XAS, scan positions, etc. (Detailed specifications sent to S. Bac in April 2020)
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License: ?
Debian package not available
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Visualization of contextual data (energy and polarization of the line, resolution, sample and spectrometer positions)
Processing of CCD images to extract RIXS spectra: application of thresholds, extraction of the curvature (by Gaussian fit) necessary to sum the
CCD lines after linear interpolation.
Visualization of the RIXS spectra and construction of RIXS maps in two representations: Emission Energy and Energy Loss.
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