Debian Med Typesetting packages

KiNG (Kinemage, Next Generation) is an interactive system for three-dimensional vector graphics. It supports a set of graphics primitives that make it suitable for many types of graphs, plots, and other illustrations; although its first use was to display macromolecular structures for biophysical research. KiNG builds on Mage, JavaMage, and the "kinemage" (kinetic image) concept to deliver a full-featured Java application with a user-friendly interface and integrated editing features. The KiNG jar file can be used within a web page as a Java applet or Java object to promote easy access to kinemages or coordinate files from a web browser.

Balík biblatex, ktorého autorom je Philipp Lehman sa stáva pre používateľov LaTeXu de facto štandardným nástrojom na správu citácií. BibLaTeX sa spoliehal na program BibTeX iba kvôli triedeniu a tvorbe veľmi všeobecného súboru .bbl bez akýchkoľvek inštrukcií ohľadne formátovania. O všetko ostatné sa stará biblatex, ktorý poskytuje autorom citačných štýlov mocné a flexibilné rozhranie makier.

Biber ponúka veľkú nadmnožinu funkcií BibTeXu pre používateľov BibLaTeXu. Okrem toho ponúka plnú podporu UTF-8 (Unicode 6.0), plne nastaviteľné zoraďovanie, výstup do GraphViz pomáhajúci pri vizualizácii komplexných krížových odkazov, podporu vzdialených zdrojov dát, overenie štruktúry dát oproti (prispôsobiteľnému) dátovému modelu a oveľa viac.

An application to manage bibliography databases in the BibTeX format. KBibTeX can be used as a standalone program, but can also be embedded into other KDE applications (e.g. as bibliography editor into Kile).

KBibTeX can query online resources (e.g. Google scholar) via customizable search URLs. It is also able to import complete datasets from NCBI Pubmed. It also supports tagging references with keywords and manages references to local files.

BibTeX files can be exported into HTML, XML, PDF, PS and RTF format using a number of citation styles.

qqman is an add-on package for the R statistical environment. This package provides functions for visualizing Genome-Wide Association Studies (GWAS) results using Manhattan plots and Quantile-Quantile plots.

Bibus is a bibliographic database which has been developed with LibreOffice/ OpenOffice.org in mind. It can directly insert citations and format the bibliographic index in an open OpenOffice.org Writer document. The main features are

• hierarchical organization of the references with user-defined keys
• designed for multiuser-environments (share databases between users)
• a search engine supporting live queries
• on-line PubMed access
• import of PubMed (Medline), EndNote/Refer, RIS and BibTeX records.

Bibus will use an SQLite-database by default for storage (via the SQLite3 module available in Python >2.5). But it also supports MySQL-databases. If you want to use a MySQL-database, make sure, that you have the python-mysqldb package installed.