Debian Med Project
Help us to see Debian used by medical practitioners and biomedical researchers! Join us on the Salsa page.
Summary
Tools
Debian Med several tools

This metapackage will install tools for several purposes in health care. Currently it contains some simple programs for Personal Health.

Description

For a better overview of the project's availability as a Debian package, each head row has a color code according to this scheme:

If you discover a project which looks like a good candidate for Debian Med to you, or if you have prepared an unofficial Debian package, please do not hesitate to send a description of that project to the Debian Med mailing list

Links to other tasks

Debian Med Tools packages

Official Debian packages with high relevance

cronometer
CRON-o-Meter - Exercise and nutrient intake tracker
Versions of package cronometer
ReleaseVersionArchitectures
trixie0.9.9+dfsg1-1all
bookworm0.9.9+dfsg1-1all
sid0.9.9+dfsg1-1all
bullseye0.9.9+dfsg-4all
buster0.9.9+dfsg-3all
stretch0.9.9+dfsg-1all
jessie0.9.9+dfsg-1all
Popcon: 5 users (1 upd.)*
Versions and Archs
License: DFSG free
Git

Easy to use daily nutrient intake tracker that includes nutritional information on over 8000 foods. User can create, import and export custom foods and recipes as well as set personal targets for each nutrient. CRON-O-Meter can also track and chart your biometrics (weight, blood pressure, temperature, etc) and generate detailed reports on your nutritional intake.

Screenshots of package cronometer
cycle
calendar program for women
Versions of package cycle
ReleaseVersionArchitectures
sid0.3.3-2all
trixie0.3.3-2all
bookworm0.3.2-2all
buster0.3.1-14all
stretch0.3.1-12all
jessie0.3.1-11all
Debtags of package cycle:
interfacex11
roleprogram
uitoolkitwxwidgets
usetimekeeping
Popcon: 6 users (0 upd.)*
Versions and Archs
License: DFSG free
Git

Cycle is a calendar for women. Given a cycle length or statistics for several periods, it can calculate the days until menstruation, the days of "safe" sex, the fertile period, and the days to ovulations, and define the d.o.b. of a child. It allows the user to write notes and helps to supervise the administration of hormonal contraceptive tablets.

Possibilities of the program:

  • Calculate days of menstruation, based on the length of the cycle or on statistics of previous periods.
  • Calculate days of "safe" sex, fertile period and day to ovulations.
  • Definition of D.O.B. (Date Of Birth) of a child
  • Allows one to write notes.
  • Helps to supervise reception of hormonal contraceptive tablets.
  • Multiple users allowed. Data is protected by a password for every user.

NOTE: This program is not a reliable contraceptive method. It does neither help to prevent sexual transmission diseases like AIDS. It is just an electronic means of keeping track of some of your medical data and extract some statistical conclusions from them. You cannot consider this program as a substitute for your gynecologist in any way.

Screenshots of package cycle
edfbrowser
viewer for biosignal storage files such as bdf and edf
Versions of package edfbrowser
ReleaseVersionArchitectures
bookworm2.00+dfsg-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el
sid2.12+dfsg-1amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64
trixie2.12+dfsg-1amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64
bullseye1.81+dfsg-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
buster1.67+dfsg-1amd64,arm64,armhf,i386
stretch1.58-1amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x
jessie1.54-2amd64,armel,armhf,i386
Debtags of package edfbrowser:
roleprogram
uitoolkitqt
useviewing
Popcon: 1 users (3 upd.)*
Versions and Archs
License: DFSG free
Git

EDFbrowser is a viewer for medical timeseries storage files containing data such as EEG, EMG, and ECG signals. It supports EDF(+) and BDF(+) file formats. Apart from viewing the files, it also supports some editing operations and can convert the biomedical files to other formats.

Please cite: Martin Wolgast, Lars-Gunnar Lundh and Gardar Viborg: Cognitive reappraisal and acceptance: An experimental comparison of two emotion regulation strategies". Behaviour Research and Therapy 49(12):858–866 (2011)
galileo
Utility to securely synchronize a Fitbit device with the Fitbit web service
Versions of package galileo
ReleaseVersionArchitectures
bookworm0.5.1-9.1all
trixie0.5.1-11all
sid0.5.1-11all
stretch0.5.1-4all
buster0.5.1-6all
bullseye0.5.1-7all
Popcon: 23 users (0 upd.)*
Versions and Archs
License: DFSG free
Git

Galileo is a Python utility to securely synchronize a Fitbit device with the Fitbit web service. It allows you to browse your data on their website, and compatible applications. The main features of Galileo are: Synchronize your fitbit tracker with the fitbit server using the provided dongle; Securely communicate (using HTTPS) with the fitbit server; Save all your dumps locally for possible later analyse. Galileo supports the following trackers:

  • Fitbit One
  • Fitbit Zip
  • Fitbit Flex
  • Fitbit Force
  • Fitbit Charge
  • Fitbit Charge HR
hunspell-de-med
German medical dictionary for hunspell
Versions of package hunspell-de-med
ReleaseVersionArchitectures
sid20230905-1all
jessie20110608-1all
stretch20160103-1all
buster20160103-3all
bullseye20160103-5all
bookworm20220425-1all
trixie20230905-1all
Debtags of package hunspell-de-med:
culturegerman
made-ofdictionary
roleapp-data
usechecking
Popcon: 8 users (0 upd.)*
Versions and Archs
License: DFSG free
Git

This package contains a German medical dictionary for use with the hunspell spellchecker which is currently used within OpenOffice.org2 and as an ispell clone.

hunspell-en-med
English medical dictionary for hunspell
Versions of package hunspell-en-med
ReleaseVersionArchitectures
jessie0.0.20080513-2all
stretch0.0.20080513-2all
buster0.0.20140410-1all
bullseye0.0.20140410-2all
bookworm0.0.20140410-4all
trixie0.0.20140410-5all
sid0.0.20140410-5all
Popcon: 6 users (3 upd.)*
Versions and Archs
License: DFSG free
Git

This package contains an English medical dictionary for use with the hunspell spell checker which is currently used by OpenOffice.org2

nut-nutrition
??? missing short description for package nut-nutrition :-(
Versions of package nut-nutrition
ReleaseVersionArchitectures
jessie20.1-2amd64,armel,armhf,i386
Debtags of package nut-nutrition:
interfacecommandline
roleprogram
scopeapplication
useorganizing
works-withpim
Popcon: 0 users (0 upd.)*
Versions and Archs
License: DFSG free
Git
Screenshots of package nut-nutrition
nutsqlite
Dietary nutrition analysis software
Versions of package nutsqlite
ReleaseVersionArchitectures
trixie2.0.6-4all
bookworm2.0.6-3all
sid2.0.6-4all
buster2.0.6-1all
stretch1.9.9.3-2all
bullseye2.0.6-3all
Popcon: 3 users (0 upd.)*
Versions and Archs
License: DFSG free
Git

NUTsqlite uses the USDA database and stores this along with your personal data in a portable SQLite database allowing you to perform analysis and plan for your nutrition. Features include:

  • The complete USDA database, your personal data, and the program code all stored in a portable SQLite database
  • Foods easy to find and add to daily meals
  • Configurable for 1-19 meals per day and any dietary plan--including ketogenic, low carb, zone, low fat
  • Comprehensive meal analysis for any number of consecutive meals
  • Presents both easy-to-read percentage summaries and in-depth nutrient analysis, including Omega-3 and Omega-6 essential fatty acids
  • Foods can be weighed in grams or ounces
  • Includes novel meal planning feature: you choose the food, NUT adjusts the quantities to your plan
  • Calorie Auto-Set feature uses linear regression on daily scale measurements of weight and body fat percentage to find optimal calorie level for improved body composition
  • Allows recording of recipes and customary meals for fast data entry
  • Sorts foods richest in each of the 150 nutrients
  • Reveals which foods contribute most to user's nutrition
pcalendar
track menstrual cycles and predict fertility periods
Versions of package pcalendar
ReleaseVersionArchitectures
bookworm3.4.1-5all
trixie3.4.1-5all
sid3.4.1-5all
jessie3.4.0-1all
stretch3.4.1-1all
buster3.4.1-3all
bullseye3.4.1-4all
Debtags of package pcalendar:
interfacex11
roleprogram
x11application
Popcon: 2 users (1 upd.)*
Versions and Archs
License: DFSG free
Git

Periodic Calendar is a GUI application which assists in women menstrual cycles tracking and fertility periods prediction. This information can be used as supportive either for conception or contraception planning.

Periodic Calendar provides support for BBT and sympto-thermal methods which have the highest reliability in fertility periods prediction. User can choose any subset of the features to be used or even fall to the generic calendar method (which if used alone is very unreliable).

Authors of the Periodic Calendar still insist on not being an equal substitute to the fertility planning consultants or doctors. Before using this application please talk to your doctor or read a good book on the subject.

THE PREDICTIONS MADE BY THIS PROGRAM CAN BE NEVER BE CONSIDERED AS FINAL. THE METHODS USED ARE NOT 100% EFFECTIVE FOR ALL WOMEN.

pondus
personal weight manager for GTK+2
Versions of package pondus
ReleaseVersionArchitectures
jessie0.8.0-2all
buster0.8.0-4all
stretch0.8.0-2all
Debtags of package pondus:
fieldmedicine
interfacex11
roleprogram
scopeutility
uitoolkitgtk
usemonitor
x11application
Popcon: 0 users (0 upd.)*
Versions and Archs
License: DFSG free
Git

Pondus keeps track of your body weight and, optionally, the percentage of bodyfat, muscle and water. It aims to be simple to use, lightweight and fast. All data can be plotted to get a quick overview of the history of your weight. A simple weight planner allows one to define "target weights" and this plan can be compared with the actual measurements in a plot.

python3-fitbit
FitBit REST API Client Implementation - Python 3
Versions of package python3-fitbit
ReleaseVersionArchitectures
sid0.3.1-3all
buster0.3.0-4all
bullseye0.3.1-2all
bookworm0.3.1-3all
trixie0.3.1-3all
Popcon: 1 users (0 upd.)*
Versions and Archs
License: DFSG free
Git

A Python module containing an implementation of a client for the FitBit REST API. It uses OAuth for authentication, it supports both US and SI units.

This package contains the Python 3 module.

quitcount
Small tool which may help yourself quit smoking
Versions of package quitcount
ReleaseVersionArchitectures
bookworm3.1.4-3amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
trixie3.1.4-4amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x
sid3.1.4-4amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x
jessie3.1.3-2amd64,armel,armhf,i386
stretch3.1.3-3amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x
buster3.1.4-1amd64,arm64,armhf,i386
bullseye3.1.4-3amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
Debtags of package quitcount:
fieldmedicine, statistics
interfacex11
roleprogram
scopeapplication
uitoolkitgtk
usemeasuring
works-withpeople
x11application
Popcon: 2 users (2 upd.)*
Versions and Archs
License: DFSG free
Git

QuitCount is a simple counter that shows what you spared since you quit smoking. Once you tell it the date you quit, how much you smoked, and how much it cost, it'll tell you how many cigarettes you didn't smoke since, and how much it makes in terms of money, tar, and life expectancy.

Screenshots of package quitcount
r-cran-fitbitscraper
Import your Fitbit data from the Fitbit's website into R
Versions of package r-cran-fitbitscraper
ReleaseVersionArchitectures
buster0.1.8-5all
trixie0.1.8-6all
sid0.1.8-6all
bookworm0.1.8-6all
stretch0.1.7-1all
bullseye0.1.8-6all
Popcon: 3 users (2 upd.)*
Versions and Archs
License: DFSG free
Git

This R package scrapes Fitbit data from the Fitbit's website. This does not use the official API, but instead uses the API that the web dashboard uses to generate the graphs displayed on the dashboard after login on the Fitbit's website.

r-cran-fitcoach
R package for analysis and retrieve data of Fitbit
Versions of package r-cran-fitcoach
ReleaseVersionArchitectures
buster1.0-3all
bullseye1.0-4all
bookworm1.0-4all
sid1.0-4all
stretch1.0-1all
Popcon: 2 users (2 upd.)*
Versions and Archs
License: DFSG free
Git

This R package use the official API to import Fitbit data into R. Fitbit R API that provides fitbit coach functionality by analyzing your data obtained via fitbit API calls, and by giving personalized recommendations for the rest of the day based on your behavior.

wgerman-medical
German medical dictionary words for /usr/share/dict
Versions of package wgerman-medical
ReleaseVersionArchitectures
buster20160103-3all
bullseye20160103-5all
jessie20110608-1all
bookworm20220425-1all
stretch20160103-1all
sid20230905-1all
trixie20230905-1all
Debtags of package wgerman-medical:
culturegerman
made-ofdictionary
roleapp-data
usechecking
Popcon: 33 users (24 upd.)*
Versions and Archs
License: DFSG free
Git

This package provides the file /usr/share/dict/german-medical containing a list of German medical words. This list can be used by spelling checkers, and by programs such as look(1).

workrave
Repetitive Strain Injury prevention tool
Maintainer: Francois Marier
Versions of package workrave
ReleaseVersionArchitectures
sid1.10.52-5amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x
bookworm1.10.50-3amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
bullseye1.10.44-7.1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
buster1.10.23-5amd64,arm64,armhf,i386
stretch1.10.16-1amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x
jessie1.10.4-3amd64,armel,armhf,i386
trixie1.10.52-5amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x
Debtags of package workrave:
hardwareinput
interfacex11
roleprogram
scopeutility
suitegnome
uitoolkitgtk
usemonitor
x11applet, application
Popcon: 217 users (16 upd.)*
Versions and Archs
License: DFSG free
Git

Workrave is a program that assists in the recovery and prevention of Repetitive Strain Injury (RSI). The program frequently alerts you to take micro-pauses, rest breaks and restricts you to your daily limit.

It includes a system tray applet that works with GNOME and KDE and has network capabilities to monitor your activity even if switching back and forth between different computers is part of your job.

Workrave offers many more configuration options than other similar tools.

Official Debian packages with lower relevance

entangle
Tethered Camera Control & Capture
Versions of package entangle
ReleaseVersionArchitectures
bookworm3.0-3amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
sid3.0-4amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x
jessie0.6.0-2amd64,armel,armhf,i386
stretch0.7.1-1amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x
buster2.0-1amd64,arm64,armhf,i386
bullseye3.0-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
trixie3.0-4amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x
Debtags of package entangle:
uitoolkitgtk
Popcon: 20 users (14 upd.)*
Versions and Archs
License: DFSG free
Git

Entangle provides a graphical interface for "tethered shooting", aka taking photographs with a digital camera completely controlled from the computer.

Using Entangle is as easy as 1,2,3...

  • Connect camera
  • Launch Entangle
  • Shoot photos

With a sufficiently capable digital SLR camera Entangle allows:

  • Trigger the shutter from the computer
  • Live preview of scene before shooting
  • Automatic download and display of photos as they are shot
  • Control of all camera settings from computer
Screenshots of package entangle
goldencheetah
set of analysis tools for cycling performance
Versions of package goldencheetah
ReleaseVersionArchitectures
stretch4.0.0~DEV1607-2+deb9u1amd64,arm64,i386,mips,mips64el,mipsel,ppc64el,s390x
stretch-security4.0.0~DEV1607-2+deb9u1amd64,arm64,i386
bullseye3.5-1.1amd64,arm64,i386,mips64el,mipsel,ppc64el,s390x
jessie3.1.0-1amd64,armel,armhf,i386
buster3.5~DEV1810-1amd64,arm64,i386
bookworm3.5-1.1amd64,arm64,i386,mips64el,mipsel,ppc64el,s390x
trixie3.5-6amd64,arm64,i386,mips64el,ppc64el,riscv64,s390x
sid3.5-6amd64,arm64,i386,mips64el,ppc64el,riscv64,s390x
upstream3.7~DEV2410
Debtags of package goldencheetah:
uitoolkitqt
Popcon: 57 users (1 upd.)*
Newer upstream!
License: DFSG free
Git

GoldenCheetah is a software package that:

  • Provides a rich set of analysis tools, including a critical power graph, BikeScore calculation, histogram analysis, a best interval finder, and a pedal force versus pedal velocity chart, to name just a few.
  • Downloads ride data directly from supported devices.
  • Imports ride data downloaded with other programs, including TrainingPeaks WKO+ and the manufacturers' software for the Ergomo, Garmin, Polar, PowerTap, and SRM devices.
mencal
menstruation calendar
Versions of package mencal
ReleaseVersionArchitectures
bullseye3.0-6all
stretch3.0-2all
buster3.0-4all
bookworm3.0-6all
jessie3.0-1all
trixie3.0-6all
sid3.0-6all
Debtags of package mencal:
fieldmedicine
interfacecommandline
roleprogram
scopeutility
usetimekeeping
Popcon: 2 users (2 upd.)*
Versions and Archs
License: DFSG free
Git

Mencal is a menstruation calendar written in Perl.

It is a simple variation of the well-known Unix command cal. The main difference is that you can have some periodically repeating days highlighted in color. This can be used to track menstruation (or other) cycles conveniently.

Screenshots of package mencal
Remark of Debian Med team: Use pcalendar instead

Please consider using pcalendar instead of mencal because mencal is outdated, not maintained any more and pcalendar simply overpasses it.

oscar
Open Source CPAP Analysis Reporter (OSCAR)
Versions of package oscar
ReleaseVersionArchitectures
bookworm1.4.0-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
trixie1.5.3-1amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x
sid1.5.3-1amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x
bullseye1.2.0-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
Popcon: 10 users (3 upd.)*
Versions and Archs
License: DFSG free
Git

OSCAR is a Free Software, cross platform research tool for exploring data produced by CPAP (Continuous Positive Airway Pressure) machines, and related equipment, which are used in the treatment of sleep apnea and other sleep disorders.

OSCAR is a derivative of SleepyHead version 1.1.0, created when that was abandoned by Mark Watkins.

Debian packages in contrib or non-free

mssstest
Normalisation of disease scores for patients with Multiple Sclerosis
Versions of package mssstest
ReleaseVersionArchitectures
jessie3.0-3 (non-free)amd64,i386
stretch3.0-5 (non-free)amd64
sid3.0-7 (non-free)amd64
trixie3.0-7 (non-free)amd64
bookworm3.0-7 (non-free)amd64
bullseye3.0-7 (non-free)amd64
buster3.0-7 (non-free)amd64
Debtags of package mssstest:
fieldmedicine
interfacecommandline
roleprogram
scopeutility
usechecking
works-withpeople
works-with-formatplaintext
Popcon: 0 users (1 upd.)*
Versions and Archs
License: non-free
Git

MSSStest is a program for implementing the method described in the article The Multiple Sclerosis Severity Score. R. Roxburgh S. Seaman et al. (2004), accepted for publication by Neurology. It calculates MSSS scores and uses these scores to test for differences between disease progression rates in different groups defined by genotype at some locus. A brief description of the method is given below.

Please cite: R H S R Roxburgh, S R Seaman, T Masterman, A E Hensiek, S J Sawcer, S Vukusic, I Achiti, C Confavreux, M Coustans, E le Page, G Edan, G V McDonnell, S Hawkins, M Trojano, M Liguori, E Cocco, M G Marrosu, F Tesser, M A Leone, A Weber, F Zipp, B Miterski, J T Epplen, A Oturai, P Soelberg Sorensen, E G Celius, N Tellez Lara, X Montalban, P Villoslada, A M Silva, M Marta, I Leite, B Dubois, J Rubio, H Butzkueven, T Kilpatrick, M P Mycko, K W Selmaj, M E Rio, M Sa, G Salemi, G Savettieri, J Hillert and D A S Compston: Multiple Sclerosis Severity Score: using disability and disease duration to rate disease severity. (PubMed,eprint) Neurology 64(7):1144-51 (2005)

Packaging has started and developers might try the packaging code in VCS

pesco
Cognitive stimulation tool for elderly or cognitively impaired
Versions of package pesco
ReleaseVersionArchitectures
VCS1.2-1all
Versions and Archs
License: EUPL-1.1
Debian package not available
Git
Version: 1.2-1

Pesco is a free software (EUPL) tool whose main goal is to provide cognitive stimulation for the elderly people and cognitive impaired. Its main goal is to evaluate and cognitively stimulate people to prevent the cognitive impairment, delaying the dependence from early stages. It provides test and exercises for the neurological and functional rehabilitation of memory, concentration, reasoning and organization.

*Popularitycontest results: number of people who use this package regularly (number of people who upgraded this package recently) out of 248313