Debian Med Project
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Summary
Typesetting
Debian Med-understøttelse for opsætning og udgivelse

Denne metapakke vil installere Debianpakker, som kan være nyttige for opsætning og udgivelse indenfor lægebehandling og strukturel biologi.

Description

For a better overview of the project's availability as a Debian package, each head row has a color code according to this scheme:

If you discover a project which looks like a good candidate for Debian Med to you, or if you have prepared an unofficial Debian package, please do not hesitate to send a description of that project to the Debian Med mailing list

Links to other tasks

Debian Med Typesetting packages

Official Debian packages with high relevance

king
Interaktivt system for tredimensionel vektorgrafik
Versions of package king
ReleaseVersionArchitectures
bullseye2.23.161103+dfsg1-4all
sid2.24+dfsg2-2all
forky2.24+dfsg2-2all
trixie2.24+dfsg2-2all
bookworm2.24+dfsg2-1all
Popcon: 8 users (4 upd.)*
Versions and Archs
License: DFSG free
Git

KiNG (Kinemage, Next Generation) er et interaktivt system for tredimensionel vektorgrafik. Den understøtter et sæt af grafikprimitiver, som gør det egnet til mange typer af grafer, plot og andre illustrationer; selvom dets første brug var at vise makromolekylære strukturer for biofysisk forskning. KiNG bygger på Mage, JavaMage og »kinemage«-konceptet (kinetisk billede) for at levere et Javaprogram med alle funktioner og en brugervenlig grænseflade samt integrerede redigeringsfunktioner. KiNG-jarfilen kan bruges i en netside som et Javapanelprogram eller Javaobjekt til at fremme nem adgang til kinemages eller koordinere filer fra en internetbrowser.

texlive-latex-extra
??? missing short description for package texlive-latex-extra :-(
Versions of package texlive-latex-extra
ReleaseVersionArchitectures
bullseye2020.20210202-3all
bookworm2022.20230122-4all
trixie2024.20250309-2all
forky2025.20250727-3all
sid2025.20250727-3all
Debtags of package texlive-latex-extra:
made-offont, tex
roleapp-data
usetypesetting
works-withfont, text
works-with-formatpdf, tex
Popcon: 4466 users (1450 upd.)*
Versions and Archs
License: DFSG free
Git
Screenshots of package texlive-latex-extra
Remark of Debian Med team: For biologists specifically texshade.sty is interesting

The texlive-latex-extra package contains a lot of interesting LaTeX styles for different purposes. As a biologist you are most probably interested in

 TeXShade: http://www.uni-kiel.de/Pharmazie/chem/Prof_Beitz/texshade.htm

You might like to install texlive-latex-extra-doc as well and read the documents in

 /usr/share/doc/texlive-latex-extra-doc/latex/texshade/
texlive-science
??? missing short description for package texlive-science :-(
Versions of package texlive-science
ReleaseVersionArchitectures
forky2025.20250727-3all
bullseye2020.20210202-3all
bookworm2022.20230122-4all
sid2025.20250727-3all
trixie2024.20250309-2all
Debtags of package texlive-science:
fieldbiology, chemistry, electronics, mathematics, physics
made-oftex
roleapp-data
sciencepublishing
usetypesetting
works-withgraphs, text
works-with-formattex
Popcon: 2862 users (947 upd.)*
Versions and Archs
License: DFSG free
Git
Remark of Debian Med team: For biologists specifically biotex.sty and textopo.sty are interesting

The texlive-science package contains a lot of interesting LaTeX styles for different sciences. As a biologist you are most probably interested in

 TeXTopo: http://www.uni-kiel.de/Pharmazie/chem/Prof_Beitz/textopo.htm

You might like to install texlive-science-doc as well and read the documents in

 /usr/share/doc/texlive-science-doc/latex/textopo/

Official Debian packages with lower relevance

biber
Meget forøget BibTeX-erstatning for BibLaTeX-brugere
Versions of package biber
ReleaseVersionArchitectures
sid2.21-2all
forky2.21-2all
bullseye2.16-1all
trixie2.20-2all
bookworm2.18-1all
Popcon: 509 users (645 upd.)*
Versions and Archs
License: DFSG free
Git

Pakken biblatex af Philipp Lehman er ved at blive det definitive værktøj for citationshåndtering for LaTeX-brugere. Biblatex har været afhængig af det ærværdige BibTeX-program kun for sortering og oprettelse af en meget generisk .bbl-fil uden nogen formateringsinstruktion. Alt andet håndteres af biblatex, som tilbyder en funktionsrig og fleksibel makrogrænseflade for forfattere af citationsstile.

Biber tilbyder et stort undersæt af BibTeX-funktionalitet for BibLaTeX-brugere. Udover at tilbyde fuld UTF-8-funktioner (Unicode 6.0), fuld tilpasset sortering, uddata til GraphViz for at hjælpe med at visualisere komplekse krydsreferencer, understøttelse for eksterne datakilder, strukturel validering af data mod (den tilpassede) datamodellen og en masse andet.

kbibtex
BibTeX-redigeringsværktøj til KDE
Versions of package kbibtex
ReleaseVersionArchitectures
trixie0.10.0-4amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
bullseye0.9.90-1amd64,arm64,armhf,i386
bookworm0.9.90-1.1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
forky0.10.0-4amd64,arm64,armhf,i386,ppc64el,riscv64,s390x
sid0.10.0-4amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x
Debtags of package kbibtex:
interfacex11
roleprogram
uitoolkitqt
useediting
works-withdtp, text
works-with-formatbib
x11application
Popcon: 53 users (186 upd.)*
Versions and Archs
License: DFSG free
Git

Et program til at håndtere bibliografidatabaser i BibTeX-formatet. KBibTeX kan anvendes som et enkeltstående program, men kan også indlejres i andre KDE-programmer (f.eks. som bibliografiredigeringsværktøj i Kile).

KBibTeX kan søge i onlineressourcer (f.eks. Google Scholar) gennem tilpasselige søge-URL'er. Det kan også importere komplette datasæt fra NCBI Pubmed. Det understøtter desuden referencemarkering med nøgleord og håndterer referencer til lokale filer.

BibTeX-filer kan eksporteres til formater som HTML, XML, PDF, PS og RTF gennem en række citationsformer.

r-cran-qqman
R-pakke til at visualisere GWAS-resultater via Q-Q- og Manhattan-plot
Versions of package r-cran-qqman
ReleaseVersionArchitectures
bullseye0.1.4-7all
bookworm0.1.8+dfsg-1all
trixie0.1.9+dfsg-1all
forky0.1.9+dfsg-1all
sid0.1.9+dfsg-1all
Popcon: 7 users (53 upd.)*
Versions and Archs
License: DFSG free
Git

QQman er en udvidelsespakke for det statistiske miljø R. Denne pakke tilbyder funktioner for visualisering af Genome-Wide Association Studies-resultater (GWAS) via Manhattan-plot og Quantile-Quantile-plot.

Packaging has started and developers might try the packaging code in VCS

bibus
bibliographic database
Versions of package bibus
ReleaseVersionArchitectures
VCS1.5.2+dfsg-1all
Versions and Archs
License: GPL-2+
Debian package not available
Git
Version: 1.5.2+dfsg-1

Bibus is a bibliographic database which has been developed with LibreOffice/ OpenOffice.org in mind. It can directly insert citations and format the bibliographic index in an open OpenOffice.org Writer document. The main features are

  • hierarchical organization of the references with user-defined keys
  • designed for multiuser-environments (share databases between users)
  • a search engine supporting live queries
  • on-line PubMed access
  • import of PubMed (Medline), EndNote/Refer, RIS and BibTeX records.

Bibus will use an SQLite-database by default for storage (via the SQLite3 module available in Python >2.5). But it also supports MySQL-databases. If you want to use a MySQL-database, make sure, that you have the python-mysqldb package installed.

Desktop tools that help inserting references in LibreOffice, or help managing PDF collections. This list is probably incomplete.

*Popularitycontest results: number of people who use this package regularly (number of people who upgraded this package recently) out of 268328