Debian Science Project
Summary
Mathematics
Debian Science Mathematics packages

This metapackage will install Debian Science packages related to Mathematics. You might also be interested in the field::mathematics debtag and, depending on your focus, in the education-mathematics metapackage.

Translate description

Description

For a better overview of the project's availability as a Debian package, each head row has a color code according to this scheme:

If you discover a project which looks like a good candidate for Debian Science to you, or if you have prepared an unofficial Debian package, please do not hesitate to send a description of that project to the Debian Science mailing list

Links to other tasks
Index of all tasks

Debian Science Mathematics packages

Official Debian packages with high relevance

4ti2
??? missing short description for package 4ti2 :-(
Versions of package 4ti2
ReleaseVersionArchitectures
forky1.6.15+ds-1amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
trixie1.6.10+ds-1.1amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
bookworm1.6.9+ds-8amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
bullseye1.6.9+ds-2amd64,arm64,armhf,i386
sid1.6.15+ds-1amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
Popcon: 29 users (20 upd.)*
Versions and Archs
 License: DFSG free
Git
agda
??? missing short description for package agda :-(
Versions of package agda
ReleaseVersionArchitectures
trixie2.6.4.3-1all
forky2.8.0-2all
sid2.8.0-2all
bookworm2.6.2.2-1.1all
bullseye2.6.1-1all
Debtags of package agda:
rolemetapackage
Popcon: 0 users (0 upd.)*
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 License: DFSG free
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auto-07p
??? missing short description for package auto-07p :-(
Versions of package auto-07p
ReleaseVersionArchitectures
trixie0.9.2+dfsg-3.1amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
forky0.9.2+dfsg-3.1amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
sid0.9.2+dfsg-3.1amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
bullseye0.9.2+dfsg-3amd64,arm64,armhf,i386
bookworm0.9.2+dfsg-3amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
Popcon: 10 users (3 upd.)*
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 License: DFSG free
Git
axiom
??? missing short description for package axiom :-(
Maintainer: Camm Maguire
Versions of package axiom
ReleaseVersionArchitectures
sid20210105dp1-3amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
trixie20210105dp1-1amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
forky20210105dp1-3amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
bullseye20170501-6amd64,arm64,armhf,i386
bookworm20170501-12amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
Debtags of package axiom:
develcompiler, interpreter
fieldmathematics
interfacetext-mode
roleprogram
scopeutility
Popcon: 11 users (16 upd.)*
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 License: DFSG free
The package is enhanced by the following packages: texmacs-bin
bliss
??? missing short description for package bliss :-(
Versions of package bliss
ReleaseVersionArchitectures
trixie0.77-3amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
sid0.77-5amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
bookworm0.73-5amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
bullseye0.73-5amd64,arm64,armhf,i386
forky0.77-5amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
Debtags of package bliss:
interfacecommandline
roleprogram
Popcon: 12 users (25 upd.)*
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 License: DFSG free
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cohomcalg
??? missing short description for package cohomcalg :-(
Versions of package cohomcalg
ReleaseVersionArchitectures
trixie0.32+ds-6amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
sid0.32+ds-8amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
forky0.32+ds-8amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
bullseye0.32+ds-3amd64,arm64,armhf,i386
bookworm0.32+ds-6amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
Popcon: 7 users (10 upd.)*
Versions and Archs
 License: DFSG free
Git
Please cite: Ralph Blumenhagen, Benjamin Jurke, Thorsten Rahn and Helmut Roschy: Cohomology of Line Bundles: A Computational Algorithm. J. Math. Phys. 51 (2010)
coinor-cbc
??? missing short description for package coinor-cbc :-(
Versions of package coinor-cbc
ReleaseVersionArchitectures
trixie2.10.12+ds-1amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
bullseye2.10.5+ds1-3amd64,arm64,armhf,i386
bookworm2.10.8+ds1-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
forky2.10.13+ds-1amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
sid2.10.13+ds-1amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
Popcon: 78 users (150 upd.)*
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 License: DFSG free
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coinor-csdp
??? missing short description for package coinor-csdp :-(
Versions of package coinor-csdp
ReleaseVersionArchitectures
forky6.2.0-6amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
trixie6.2.0-5amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
bullseye6.2.0-3amd64,arm64,armhf,i386
bookworm6.2.0-4amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
sid6.2.0-6amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
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 License: DFSG free
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Please cite: Borchers, Brian: CSDP, AC library for semidefinite programming. (eprint) Optimization methods and Software 11(1-4):612-623 (1999)
coinor-libbonmin-dev
??? missing short description for package coinor-libbonmin-dev :-(
Versions of package coinor-libbonmin-dev
ReleaseVersionArchitectures
forky1.8.9-3amd64,arm64,armhf,i386,ppc64el,riscv64,s390x
trixie1.8.9-3amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
sid1.8.9-3amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
bookworm1.8.9-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
Popcon: 3 users (9 upd.)*
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 License: DFSG free
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coinor-symphony
??? missing short description for package coinor-symphony :-(
Versions of package coinor-symphony
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bullseye5.6.16+repack1-3amd64,arm64,armhf,i386
bookworm5.6.17+dfsg-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
sid5.7.2+dfsg-1amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
forky5.7.2+dfsg-1amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
trixie5.7.2+dfsg-1amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
upstream5.7.3
Popcon: 22 users (132 upd.)*
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coq
??? missing short description for package coq :-(
Versions of package coq
ReleaseVersionArchitectures
forky8.20.1+dfsg-1amd64,arm64,ppc64el,riscv64,s390x
sid8.20.1+dfsg-1amd64,arm64,ppc64el,riscv64,s390x
experimental9.1.0+dfsg-3amd64,arm64,armhf,i386,ppc64el,riscv64,s390x
bullseye8.12.0-3amd64,arm64,armhf,i386
bookworm8.16.1+dfsg-1amd64,arm64,armhf,i386,ppc64el,s390x
trixie8.20.1+dfsg-1amd64,arm64,ppc64el,riscv64,s390x
upstream9.2.0
Debtags of package coq:
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uitoolkitncurses
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cryptominisat
??? missing short description for package cryptominisat :-(
Versions of package cryptominisat
ReleaseVersionArchitectures
bookworm5.11.4+dfsg1-2amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
trixie5.11.21+dfsg1-2amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
sid5.11.21+dfsg1-3amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
forky5.11.21+dfsg1-3amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
bullseye5.8.0+dfsg1-1amd64,arm64,armhf,i386
upstream5.14.4
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eclib-tools
??? missing short description for package eclib-tools :-(
Versions of package eclib-tools
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bookworm20221012-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
bullseye20190909-3amd64,arm64,armhf,i386
sid20250627-1amd64,arm64,i386,loong64,ppc64el,riscv64,s390x
sid20250122-2armhf
trixie20250122-2amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
upstream20260501
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eprover
??? missing short description for package eprover :-(
Versions of package eprover
ReleaseVersionArchitectures
sid3.2.5+ds-1amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
bookworm2.6+ds-3amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
trixie3.2.5+ds-1amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
forky3.2.5+ds-1amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
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Remark of Debian Science team: Removed from Debian

This package was removed from Debian but some versions are available from http://snapshot.debian.org/

Reasons are given here: http://bugs.debian.org/651971
fenics
??? missing short description for package fenics :-(
Versions of package fenics
ReleaseVersionArchitectures
sid0.10.0.1amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
bullseye2019.2.0.5amd64,arm64,armhf,i386
forky0.10.0.1amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
bookworm0.5.0.1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
trixie0.9.0.3amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
Debtags of package fenics:
fieldmathematics
rolemetapackage
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 License: DFSG free
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flintqs
??? missing short description for package flintqs :-(
Versions of package flintqs
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trixie1.0-4amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
bullseye1.0-3amd64,arm64,armhf,i386
forky1.0-4amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
sid1.0-4amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
bookworm1.0-4amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
Popcon: 18 users (15 upd.)*
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 License: DFSG free
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form
??? missing short description for package form :-(
Versions of package form
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bookworm4.3.0+git20230104+ds-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
sid5.0.0-2amd64,arm64,loong64,ppc64el,riscv64,s390x
forky5.0.0-2amd64,arm64,ppc64el,riscv64,s390x
bullseye4.2.1+git20200217-1amd64,arm64,armhf,i386
trixie4.3.1+git20250227+ds-2amd64,arm64,ppc64el,riscv64,s390x
upstream2010-08-27
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fplll-tools
??? missing short description for package fplll-tools :-(
Versions of package fplll-tools
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bookworm5.4.4-3amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
trixie5.5.0-1.1amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
forky5.5.0-1.2amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
sid5.5.0-1.2amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
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freefem
??? missing short description for package freefem :-(
Versions of package freefem
ReleaseVersionArchitectures
bookworm3.5.8-7amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
sid3.5.8-8amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
forky3.5.8-8amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
trixie3.5.8-7amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
bullseye3.5.8-7amd64,arm64,armhf,i386
Debtags of package freefem:
develinterpreter
fieldphysics
interfacecommandline
roleprogram
scopeutility
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freefem++
??? missing short description for package freefem++ :-(
Versions of package freefem++
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bookworm4.11+dfsg1-3amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
sid4.15+dfsg-2amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
forky4.15+dfsg-2amd64,arm64,armhf,i386,ppc64el,riscv64,s390x
trixie4.15+dfsg-1amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
upstream4.16
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Please cite: Hecht, F.: New development in FreeFem++. J. Numer. Math. 20(3-4):251-265 (2012)
Screenshots of package freefem++
frobby
??? missing short description for package frobby :-(
Versions of package frobby
ReleaseVersionArchitectures
sid0.9.9-1amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
bullseye0.9.1-1amd64,arm64,armhf,i386
forky0.9.9-1amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
bookworm0.9.5-4amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
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gap
??? missing short description for package gap :-(
Maintainer: Bill Allombert
Versions of package gap
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bullseye4.11.0-4all
bookworm4.12.1-2all
trixie4.14.0-3all
forky4.15.1-1all
sid4.15.1-1all
Debtags of package gap:
fieldmathematics
rolemetapackage
Popcon: 14 users (4 upd.)*
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 License: DFSG free
gap-character-tables
??? missing short description for package gap-character-tables :-(
Maintainer: Bill Allombert
Versions of package gap-character-tables
ReleaseVersionArchitectures
bookworm1.3.4-1all
sid1.3.11-1all
forky1.3.11-1all
bullseye1.3.1-1all
trixie1.3.9-2all
Debtags of package gap-character-tables:
devellibrary
fieldmathematics
roleapp-data
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gap-design
??? missing short description for package gap-design :-(
Versions of package gap-design
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bullseye1.7+ds-2all
sid1.8.2+ds-1all
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gap-factint
??? missing short description for package gap-factint :-(
Versions of package gap-factint
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sid1.6.3+ds-3all
forky1.6.3+ds-3all
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gap-float
??? missing short description for package gap-float :-(
Versions of package gap-float
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sid1.0.9+ds-3amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
bookworm1.0.3+ds-3amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
forky1.0.9+ds-3amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
bullseye0.9.1+ds-6amd64,arm64,armhf,i386
trixie1.0.7+ds-2amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
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gap-grape
??? missing short description for package gap-grape :-(
Versions of package gap-grape
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forky4.9.3+ds-1all
sid4.9.3+ds-1all
bookworm4.9.0+ds-1all
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gap-guava
??? missing short description for package gap-guava :-(
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bookworm3.17+ds-3all
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gap-laguna
??? missing short description for package gap-laguna :-(
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gap-openmath
??? missing short description for package gap-openmath :-(
Versions of package gap-openmath
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bookworm11.5.2+ds-1all
sid11.5.3+ds-3all
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gap-sonata
??? missing short description for package gap-sonata :-(
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forky2.9.7+ds-1all
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gap-table-of-marks
??? missing short description for package gap-table-of-marks :-(
Maintainer: Bill Allombert
Versions of package gap-table-of-marks
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forky1.2.11-1all
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gap-toric
??? missing short description for package gap-toric :-(
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geneagrapher
??? missing short description for package geneagrapher :-(
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forky2.0.0-2all
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bookworm1.0c2+git20220519-1all
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geogebra
??? missing short description for package geogebra :-(
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interfacex11
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Screenshots of package geogebra
geomview
??? missing short description for package geomview :-(
Versions of package geomview
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sid1.9.5-6amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
forky1.9.5-6amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
bullseye1.9.5-3amd64,arm64,armhf,i386
trixie1.9.5-5amd64,arm64,ppc64el,riscv64,s390x
bookworm1.9.5-4amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
Debtags of package geomview:
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getdp
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Please cite: P. Dular, C. Geuzaine, A. Genon and W. Legros: An evolutive software environment for teaching finite element methods in electromagnetism. IEEE Transactions on Magnetics 35(3):1682 - 1685 (1999)
gfan
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ginac-tools
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gmsh
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Please cite: C. Geuzaine and J.-F. Remacle: Gmsh: a three-dimensional finite element mesh generator with built-in pre- and post-processing facilities. (eprint) International Journal for Numerical Methods in Engineering 79(11):1309-1331 (2009)
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graphviz
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hol-light
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julia
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lcalc
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libjgrapht-java
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libmatheval1
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lp-solve
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lrcalc
??? missing short description for package lrcalc :-(
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lrslib
??? missing short description for package lrslib :-(
Maintainer: David Bremner
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macaulay2
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Please cite: Daniel R. Grayson and Michael E. Stillman: Macaulay2, a software system for research in algebraic geometry.
magnus
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mathicgb
??? missing short description for package mathicgb :-(
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Please cite: Bjarke Hammersholt Roune and Michael Stillman: Practical Groebner Basis Computation. (eprint) Proceedings of the International Symposium on Symbolic and Algebraic Computation (2012)
mathomatic
??? missing short description for package mathomatic :-(
Maintainer: tony mancill (Adrian Bunk)
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mathpiper
??? missing short description for package mathpiper :-(
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maxima-sage
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mcl
??? missing short description for package mcl :-(
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The package is enhanced by the following packages: zoem
Please cite: Stijn van Dongen and Cei Abreu-Goodger: Using MCL to extract clusters from networks. (PubMed,eprint) Methods Mol Biol. 804:281-95 (2012)
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minisat
??? missing short description for package minisat :-(
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mumps-test
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nauty
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The package is enhanced by the following packages: nauty-doc
Please cite: B.D. McKay and A. Piperno: Practical graph isomorphism, II. Journal of Symbolic Computation 60(0):94 - 112 (2014)
netgen
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normaliz
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octave
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The package is enhanced by the following packages: liboctave-dev octave-dev octave-doc texmacs-bin
Please cite: John W. Eaton, David Bateman, Søren Hauberg and Rik Wehbring: GNU Octave version 4.2.0 manual: a high-level interactive language for numerical computations. (2016)
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palp
??? missing short description for package palp :-(
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Please cite: Maximilian Kreuzer and Harald Skarke: PALP: A Package for Analyzing Lattice Polytopes with Applications to Toric Geometry. Computer Physics Communications 157:87-106 (2004)
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pari-gp
??? missing short description for package pari-gp :-(
Maintainer: Bill Allombert
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persalys
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phcpack
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Please cite: Verschelde, Jan: Algorithm 795: PHCpack: A general-purpose solver for polynomial systems by homotopy continuation ACM Trans. Math. Software 25(2):251-276 (1999)
planarity
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polylib-utils
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proofgeneral
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python3-dolfin
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python3-ffc
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qhull-bin
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qsopt-ex
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Please cite: David L Applegate, William Cook, Sanjeeb Dash and Daniel G Espinoza: Exact solutions to linear programming problems. Operations Research Letters 35(6):693-699 (2007)
regina-normal
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Maintainer: Ben Burton (Adrian Bunk)
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rheolef
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Please cite: Piere Saramito: (2016)
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rubiks
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sagemath
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The package is enhanced by the following packages: texmacs-bin
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sagemath-database-conway-polynomials
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sagemath-database-cremona-elliptic-curves
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sagemath-database-elliptic-curves
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sagemath-database-graphs
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sagemath-database-mutually-combinatorial-designs
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sagemath-database-polytopes
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science-statistics
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scilab
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The package is enhanced by the following packages: texmacs-bin
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scotch
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singular
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surf-alggeo
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sympow
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tachyon
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tetgen
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topcom
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Please cite: Rambau, Jörg: TOPCOM: Triangulations of Point Configurations and Oriented Matroids. :330-340 (2002)
toulbar2
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wxmaxima
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xcas
??? missing short description for package xcas :-(
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The package is enhanced by the following packages: texmacs-bin
xmaxima
??? missing short description for package xmaxima :-(
Maintainer: Camm Maguire
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xmds2
??? missing short description for package xmds2 :-(
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Please cite: Graham R. Dennis, Joseph J. Hope and Mattias T. Johnsson: XMDS2: Fast, scalable simulation of coupled stochastic partial differential equations. Computer Physics Communications 184(1):201-208 (2013)

Official Debian packages with lower relevance

ann-tools
??? missing short description for package ann-tools :-(
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evolver-nox
??? missing short description for package evolver-nox :-(
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The package is enhanced by the following packages: evolver-doc
evolver-ogl
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gap-gapdoc
??? missing short description for package gap-gapdoc :-(
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gap-online-help
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gap-scscp
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gmp-ecm
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libspectra-dev
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netgen-doc
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primesieve
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r-cran-evd
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Please cite: Alec G. Stephenson: evd: Extreme Value Distributions. R News 2(2):31-32 (2002)
sagetex
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The package is enhanced by the following packages: sagetex-doc

Debian packages in contrib or non-free

matlab-support
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Packaging has started and developers might try the packaging code in VCS

freefem3d
Language and solver for partial differential equations in 3D
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Version: 1.0pre10-4

FreeFEM3D (aka ff3d) is a 3D solver of partial differential equations (PDE). It is a member of the familly of the freefem programs (see http://www.freefem.org).

ff3d, as well as its cousins, is a PDE solver driven by a user-friendly language. It solves many kind of problems such as elasticity, fluids (Stokes and Navier-Stokes) and a lot more. The user has to enter the equation associated with the problem, giving either the PDE in strong formulation or weak (variational) formulation.

ff3d can use either the Finite Elements method (the mesh of the geometry being provided by the user) or a Fictitious Domain like approach where the geometry is described using Constructive Solid Geometry (CSG). This description is done using the POV-Ray language but others such as VRML could be added.

The processing of the results is left to the user. One can use various graphic tools: output in the MEdit mesh format or VTK are supported. The implementation of a VTK base visualization module is underway.

The goal of ff3d is to provide a good teaching tool and a research toolbox (the code is written in C++ and its design is such that new methods can be easily implemented).
freemat
mathematics framework (mostly matlab compatible)
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Version: 4.2+dfsg1-6

FreeMat is a free environment for rapid engineering and scientific prototyping and data processing. It is similar to commercial systems such as MATLAB from Mathworks, and IDL from Research Systems, but is Open Source. FreeMat is available under the GPL license.
isabelle
generic theorem proving environment
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Version: 2008-4

Features a choice of several ready-to-use logics (Higher Order Logic, Higher Order Logic augmented with Scott's Logic for Computable Functions, First Order Logic, Zermello-Frankel, an extensional version of Martin-Löf Type Theory, Barendregt's Lambda Cube, a few sequent calculi (including modal and linear logics), ...) or defining your own logic / deductive system, a procedural and a declarative proof style, rich automation for classical reasoning, equational logic and algebra, LaTeX and X-Symbols notational support.

This package contains the isabelle toolchain.
Remark of Debian Science team: upstream prefers Isabelle not being packaged

There is an alternative software coq which is packaged in Debian (see above).
model-builder
graphical ODE simulator
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Version: 0.4.6-1

Model Builder is a graphical tool for designing, simulating and analyzing Mathematical model consisting of a system of ordinary differential equations(ODEs).
pyomo
PYthon Optimization Modeling Objects
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Version: 5.6.9-1

Pyomo is a tool for formulating and analyzing mathematical models that represent real-world systems for complex optimization applications as applied in different areas of business, engineering, research, and administration. It's used to define symbolic problems, create concrete problem instances, and solve this instances with standard solvers. Pyomo provides a capability that is commonly associated with algebraic modeling languages (AML) and applications like AMPL, AIMMS, or GAMS, but has its modeling objects within the Python environment. Pyomo features a versatile set of modeling components, and supports concrete models (defined with data) as well as abstract models (defined without data).

For the processing of instantiated models Pyomo supports a wide range of independent solvers that could be written either in Python or other languages. Pyomo supports the general ASL (AMPL Solver Library) compatible interface, and has invidividual backends for solvers which some of them are available within Debian (GLPK, COIN-OR CPC, OPENOPT). Pyomo's solver manager could also employ the public NEOS Server to remotely optimize models if network access is available.

Pyomo was formerly released as the Coopr software library, and includes the PySP package (Pyomo Stochastic Programming) which provides generic solvers for stochastic programming.
Registry entries: Bioconda 
scilab-ann
Scilab module for artificial neural networks
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Version: 0.4.2.4-2

This module implements artificial neural networks capabilities into the Scilab language. Current features are:

  • Only layered feedforward networks are supported directly at the moment (for others use the "hooks" provided)
  • Unlimited number of layers
  • Unlimited number of neurons per each layer separately
  • User defined activation function (defaults to logistic)
  • User defined error function (defaults to SSE)
  • Algorithms implemented so far:
  • standard (vanilla) with or without bias, on-line or batch
  • momentum with or without bias, on-line or batch
  • SuperSAB with or without bias, on-line or batch
  • Conjugate gradients
  • Jacobian computation
  • Computation of result of multiplication between "vector" and Hessian
  • Some helper functions provided

Unofficial packages built by somebody else

octaviz
3D visualization system for Octave
License: unknown

Octaviz is a visualization system for Octave. It is a wrapper that makes all VTK classes accessible from within Octave using the same object-oriented syntax as in C++ or Python. Octaviz also provides high-level functions for 2D and 3D visualization. Using those functions, most common visualization tasks (3D surface plots, contour plots etc) can be accomplished without any knowledge about VTK.
Remark of Debian Science team: Removed from Debian

This package was removed from Debian but some versions are available from http://snapshot.debian.org/

Reasons are given here: http://bugs.debian.org/535537
*Popularitycontest results: number of people who use this package regularly (number of people who upgraded this package recently) out of 284137