Debian Science Project
Summary
Image analysis
Debian Science image analysis packages

This metapackage will install Debian Science packages related to scientific image acquisition. This might be used in several sciences (as for instance science-dataacquisition, science-viewing and science-typesetting).

Description

For a better overview of the project's availability as a Debian package, each head row has a color code according to this scheme:

If you discover a project which looks like a good candidate for Debian Science to you, or if you have prepared an unofficial Debian package, please do not hesitate to send a description of that project to the Debian Science mailing list

Links to other tasks

Debian Science Image analysis packages

Official Debian packages with high relevance

gpiv
??? missing short description for package gpiv :-(
Versions of package gpiv
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jessie0.6.1-2.3amd64,armel,armhf,i386
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uitoolkitgtk
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License: DFSG free
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gpivtools
??? missing short description for package gpivtools :-(
Versions of package gpivtools
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jessie0.6.0-3.1amd64,armel,armhf,i386
Debtags of package gpivtools:
interfacecommandline
roleprogram
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License: DFSG free
gwyddion
Scanning Probe Microscopy visualization and analysis tool
Versions of package gwyddion
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jessie2.38-2amd64,armel,armhf,i386
sid2.66-2amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x
trixie2.66-2amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x
bookworm2.62-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
buster2.52-1amd64,arm64,armhf,i386
bullseye2.57-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
stretch2.47-1amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x
Debtags of package gwyddion:
fieldphysics
interfacex11
roleprogram
sciencevisualisation
scopeapplication
uitoolkitgtk
useanalysing, viewing
works-withimage, image:raster
x11application
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License: DFSG free
Git

Gwyddion is a modular program for Scanning Probe Microscopy (SPM) data visualization and analysis. It is primarily intended for analysis of height field data obtained by microscopy techniques like

  • Atomic Force Microscopy (AFM),
  • Magnetic Force Microscopy (MFM),
  • Scanning Tunneling Microscopy (STM),
  • Near-field Scanning Optical Microscopy (SNOM or NSOM) and others. However, it can be used for arbitrary height field and image analysis.

This package contains the main application and its modules. It also contains a GNOME (and Xfce) thumbnailer which creates previews for all file types known to Gwyddion.

Please cite: David Nečas and Petr Klapetek: Gwyddion: an open-source software for SPM data analysis. (eprint) Central European Journal of Physics 10(1):181-188 (2012)
Registry entries: SciCrunch 
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libcvd-tools
C++ library for computer vision, image, and video processing - tools
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bookworm0.0~git20221020150751.30e8cfc+ds1-1amd64,arm64,i386,mipsel,ppc64el,s390x
trixie0.0~git20221020150751.30e8cfc+ds1-1amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
sid0.0~git20221020150751.30e8cfc+ds1-1amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
upstream0.0~git20240324163423.09b46d8
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Newer upstream!
License: DFSG free
Git

libCVD is a very portable and high performance C++ library for computer vision, image, and video processing. The emphasis is on providing simple and efficient image and video handling and high quality implementations of common low-level image processing function. The library is designed in a loosely-coupled manner, so that parts can be used easily in isolation if the whole library is not required. The video grabbing module provides a simple, uniform interface for videos from a variety of sources (live and recorded) and allows easy access to the raw pixel data. Likewise, the image loading/saving module provides simple, uniform interfaces for loading and saving images from bitmaps to 64 bit per channel RGBA images. The image processing routines can be applied easily to images and video, and accelerated versions exist for platforms supporting SSE.

This package contains tools and utilities using libcvd.

limereg
Lightweight Image Registration
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buster1.4.1-4amd64,arm64,armhf,i386
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License: DFSG free
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Command line application for image registration. Automatically finds an optimal alignment of two input images, that makes both most similar to each other. Outputs the rigid transformation parameters (shift and rotation) and/or the registered (transformed/aligned) image.

Fast algorithm based on analytical derivative based optimization with a multilevel approach and without expensive sparse-matrices.

Screenshots of package limereg
teem-apps
Tools to process and visualize scientific data and images - command line tools
Versions of package teem-apps
ReleaseVersionArchitectures
trixie1.12.0~20160122-5amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x
bookworm1.12.0~20160122-5amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
sid1.12.0~20160122-5amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x
stretch1.11.0~svn6057-1.1amd64,armel,armhf,i386,mips,mipsel,s390x
jessie1.11.0~svn5226-1amd64,armel,armhf,i386
bullseye1.12.0~20160122-4amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
Debtags of package teem-apps:
interfacecommandline
roleprogram
Popcon: 9 users (8 upd.)*
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License: DFSG free
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Teem is a coordinated group of libraries for representing, processing, and visualizing scientific raster data. Teem includes command-line tools that permit the library functions to be quickly applied to files and streams, without having to write any code. The most important and useful libraries in Teem are:

  • Nrrd (and the unu command-line tool on top of it) supports a range of operations for transforming N-dimensional raster data (resample, crop, slice, project, histogram, etc.), as well as the NRRD file format for storing arrays and their meta-information.
  • Gage: fast convolution-based measurements at arbitrary point locations in volume datasets (scalar, vector, tensor, etc.)
  • Mite: a multi-threaded ray-casting volume render with transfer functions based on any quantity Gage can measure
  • Ten: for estimating, processing, and visualizing diffusion tensor fields, including fiber tractography methods.

This package contains some simple command-line tools which provide fast and easy access to the functionality in the various libraries.

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