Summary
Electrophysiology
Debian Science packages for Electrophysiology
This metapackage will install Debian packages which might be useful for
scientists doing electrophysiology-based neuroscience research.
The selection of packages is targeting the application of analysis
techniques. Methods developers are referred to the
science-statistics, science-imageanalysis, science-numericalcomputation,
med-imaging, and med-imaging-dev metapackages for a variety of additional
software that might be useful for electrophysiology research.
Description
For a better overview of the project's availability as a Debian package, each head row has a color code according to this scheme:
If you discover a project which looks like a good candidate for Debian Science
to you, or if you have prepared an unofficial Debian package, please do not hesitate to
send a description of that project to the Debian Science mailing list
Links to other tasks
|
Debian Science Electrophysiology packages
Official Debian packages with high relevance
libdrawtk-dev
??? missing short description for package libdrawtk-dev :-(
|
Versions of package libdrawtk-dev |
Release | Version | Architectures |
jessie | 2.0-2.1 | amd64,armel,armhf,i386 |
Debtags of package libdrawtk-dev: |
devel | lang:c, library |
interface | x11 |
role | devel-lib, documentation, examples, program |
science | plotting |
uitoolkit | sdl |
use | viewing |
x11 | application |
|
License: DFSG free
|
|
|
libgdf-dev
IO library for the GDF -- development library
|
Versions of package libgdf-dev |
Release | Version | Architectures |
jessie | 0.1.2-2 | amd64,armel,armhf,i386 |
stretch | 0.1.2-2 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
buster | 0.1.2-2.1 | amd64,arm64,armhf,i386 |
bullseye | 0.1.3-8 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bookworm | 0.1.3-11 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
trixie | 0.1.3-11.1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
sid | 0.1.3-11.1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
Debtags of package libgdf-dev: |
devel | library |
role | devel-lib |
|
License: DFSG free
|
GDF (General Dataformat for Biosignals) is intended to provide a generic
storage for biosignals, such as EEG, ECG, MEG etc.
This package provides the header files.
|
|
sigviewer
GUI viewer for biosignals such as EEG, EMG, and ECG
|
Versions of package sigviewer |
Release | Version | Architectures |
buster | 0.6.2-2 | amd64,arm64,armhf,i386 |
stretch | 0.5.1+svn556-5 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
bullseye | 0.6.4-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
jessie | 0.5.1+svn556-4 | amd64,armel,armhf,i386 |
bookworm | 0.6.4-3 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
trixie | 0.6.4-3 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
sid | 0.6.4-3 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
Debtags of package sigviewer: |
interface | x11 |
role | program |
uitoolkit | qt |
use | viewing |
x11 | application |
|
License: DFSG free
|
SigViewer is a viewing and scoring software for biomedical signal
data. It relies on biosig4c++ library which supports a number of
data formats (including EDF, BDF, GDF, BrainVision, BCI2000, CFWB,
HL7aECG, SCP_ECG (EN1064), MFER, ACQ, CNT(Neuroscan), DEMG, EGI,
EEG1100, FAMOS, SigmaPLpro, TMS32). The complete list of supported
file formats is available at
http://pub.ist.ac.at/~schloegl/biosig/TESTED .
Besides displaying biosignals, SigViewer supports creating
annotations to select artifacts or specific events.
|
|
Official Debian packages with lower relevance
aghermann
Sleep-research experiment manager
|
Versions of package aghermann |
Release | Version | Architectures |
sid | 1.1.2-5 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
trixie | 1.1.2-5 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bookworm | 1.1.2-3 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bullseye | 1.1.2-3 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
buster | 1.1.2-2 | amd64,arm64,armhf,i386 |
stretch | 1.1.2-1 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
jessie | 1.0.2-1 | amd64,armel,armhf,i386 |
Debtags of package aghermann: |
uitoolkit | gtk |
|
License: DFSG free
|
Aghermann is a program designed around a common workflow in
sleep-research, complete with scoring facility; cairo subpixel
drawing on screen or to file; conventional PSD and EEG Micrcontinuity
profiles; Independent Component Analysis; artifact detection; and
Process S simulation following Achermann et al, 1993.
|
|
klustakwik
automatic sorting of the samples (spikes) into clusters
|
Versions of package klustakwik |
Release | Version | Architectures |
sid | 3.0.2+ds-2 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
trixie | 3.0.2+ds-2 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bookworm | 3.0.2+ds-2 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bullseye | 3.0.2+ds-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
buster | 2.0.1-1 | amd64,arm64,armhf,i386 |
stretch | 2.0.1-1 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
jessie | 2.0.1-1 | amd64,armel,armhf,i386 |
Debtags of package klustakwik: |
role | program |
|
License: DFSG free
|
KlustaKwik is a program for automatic clustering of continuous data
into a mixture of Gaussians. The program was originally developed for
sorting of neuronal action potentials, but can be applied to any sort
of data.
|
|
libbiosig-dev
I/O library for biomedical data - development files
|
Versions of package libbiosig-dev |
Release | Version | Architectures |
bullseye | 2.1.2-4 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
stretch | 1.3.0-2.2 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
jessie | 1.3.0-2 | amd64,armel,armhf,i386 |
buster | 1.9.3-2 | amd64,arm64,armhf,i386 |
sid | 2.6.1-1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
trixie | 2.6.1-1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bookworm | 2.5.0-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
Debtags of package libbiosig-dev: |
devel | examples, library |
role | devel-lib |
|
License: DFSG free
|
BioSig is a library for accessing files in several biomedical data formats
(including EDF, BDF, GDF, BrainVision, BCI2000, CFWB, HL7aECG,
SCP_ECG (EN1064), MFER, ACQ, CNT(Neuroscan), DEMG, EGI, EEG1100,
FAMOS, SigmaPLpro, TMS32). The complete list of supported file
formats is available at http://pub.ist.ac.at/~schloegl/biosig/TESTED .
This package provides header files and static library.
|
|
libeegdev-dev
Biosignal acquisition device library (Development files)
|
Versions of package libeegdev-dev |
Release | Version | Architectures |
sid | 0.2-9 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
stretch | 0.2-3.1 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
buster | 0.2-4 | amd64,arm64,armhf,i386 |
bullseye | 0.2-5 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bookworm | 0.2-6 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
trixie | 0.2-9 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
jessie | 0.2-3.1 | amd64,armel,armhf,i386 |
Debtags of package libeegdev-dev: |
devel | library |
role | devel-lib |
|
License: DFSG free
|
eegdev is a library that provides a unified interface for accessing various
EEG (and other biosignals) acquisition systems. This interface has been
designed to be both flexible and efficient. The device specific part is
implemented by the means of plugins which makes adding new device backend
fairly easy even if the library does not support them yet officially.
The core library not only provides to users a unified and consistent
interface to the acquisition device but it also provides many
functionalities to the device backends (plugins) ranging from configuration
to data casting and scaling making writing new device backend an easy task.
This library is particularly useful to handle the acquisition part of a
Brain Computer Interface (BCI) or any realtime multi-electrode acquisition
in neurophysiological research.
This package contains the files needed to compile and link programs which
use eegdev. It provides also the headers needed to develop new device
plugins. The manpages and examples are shipped in this package.
|
|
librtfilter-dev
realtime digital filtering library (development files)
|
Versions of package librtfilter-dev |
Release | Version | Architectures |
stretch | 1.1-4 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
jessie | 1.1-4 | amd64,armel,armhf,i386 |
bookworm | 1.1-4 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
trixie | 1.1-4 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
sid | 1.1-4 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bullseye | 1.1-4 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
buster | 1.1-4 | amd64,arm64,armhf,i386 |
Debtags of package librtfilter-dev: |
devel | lang:c, library |
field | biology, biology:bioinformatics |
role | devel-lib, documentation, examples |
science | calculation |
use | filtering |
works-with | audio, biological-sequence |
|
License: DFSG free
|
rtfilter is a library that provides a set of routines implementing realtime
digital filter for multichannel signals (i.e. filtering multiple signals
with the same filter parameters). It implements FIR, IIR filters and
downsampler for float and double data type (both for real and complex
valued signal). Additional functions are also provided to design few usual
filters: Butterworth, Chebyshev, windowed sinc, analytical filter...
One of the main differences from other libraries providing digital signal
processing is that the filter functions have been specifically designed and
optimized for multichannel signals (from few channels to several hundred).
This package contains the files needed to compile and link programs which
use rtfilter.
|
|
libxdffileio-dev
Library to read/write EEG data file formats (development files)
|
Versions of package libxdffileio-dev |
Release | Version | Architectures |
sid | 0.3-4 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bookworm | 0.3-4 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
stretch | 0.3-1 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
trixie | 0.3-4 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
jessie | 0.3-1 | amd64,armel,armhf,i386 |
buster | 0.3-2.1 | amd64,arm64,armhf,i386 |
bullseye | 0.3-4 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
Debtags of package libxdffileio-dev: |
devel | library |
role | devel-lib |
|
License: DFSG free
|
xdffileio is a library that provides a unified interface for writing and
reading various biosignal file formats in realtime (i.e. streaming). It has
been designed to provide a flexible, consistent and generic interface to
all supported file formats while minimizing the overhead the function
calls: the heaviest operations (type casting, scaling and formatting) are
offloaded into a separated thread. This design makes its particularly
suitable to be directly used in a data acquisition loop (like in
electrophysiology recording or in Brain-Computer Interfaces (BCI)).
The genericity of the interface makes trivial various operations like
transformation of a recorded file or its conversion to another file format.
xdffileio currently supports EDF, BDF, GDF1 and GDF2 file formats and more
will be added in future.
This package contains the files needed to compile and link programs which
use xdffileio.
|
|
python3-bioxtasraw
process biological small angle scattering data
|
Versions of package python3-bioxtasraw |
Release | Version | Architectures |
sid | 2.3.0-1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64 |
bookworm | 2.1.1-4 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el |
|
License: DFSG free
|
BioXTAS RAW is a GUI based, Python program for reduction and
analysis of small-angle X-ray solution scattering (SAXS) data.
The package is designed for biological SAXS data.
BioXTAS RAW provides an alternative to closed source programs
such as Primus and Scatter for primary data analysis. Because
it can calibrate, mask, and integrate images it also provides
an alternative to synchrotron beamline pipelines that scientists
can install on their own computers and use both at home and at
the beamline.
|
|
python3-neo
Python IO library for electrophysiological data formats
|
Versions of package python3-neo |
Release | Version | Architectures |
trixie | 0.13.4-1 | all |
sid | 0.13.4-1 | all |
bookworm | 0.11.1-1 | all |
bullseye | 0.9.0-1 | all |
|
License: DFSG free
|
NEO stands for Neural Ensemble Objects and is a project to provide common
classes and concepts for dealing with electro-physiological (in vivo
and/or simulated) data to facilitate collaborative software/algorithm
development. In particular Neo provides: a set a classes for data
representation with precise definitions, an IO module with a simple API,
documentation, and a set of examples.
NEO offers support for reading data from numerous proprietary file formats
(e.g. Spike2, Plexon, AlphaOmega, BlackRock, Axon), read/write support for
various open formats (e.g. KlustaKwik, Elan, WinEdr, WinWcp, PyNN), as well
as support common file formats, such as HDF5 with Neo-structured content
(NeoHDF5, NeoMatlab).
Neo's IO facilities can be seen as a pure-Python and open-source Neuroshare
replacement.
|
|
science-dataacquisition
Debian Science data acquisition packages
|
Versions of package science-dataacquisition |
Release | Version | Architectures |
stretch | 1.7 | all |
jessie | 1.4 | all |
sid | 1.14.6 | all |
buster | 1.10 | all |
bullseye | 1.14.2 | all |
trixie | 1.14.6 | all |
bookworm | 1.14.5 | all |
Debtags of package science-dataacquisition: |
role | metapackage |
suite | debian |
|
License: DFSG free
|
This metapackage will install Debian Science packages related to data
acquisition. This might be used in several sciences (as for instance
science-viewing and science-typesetting).
|
|
science-neuroscience-modeling
Debian Science packages for modeling of neural systems
|
Versions of package science-neuroscience-modeling |
Release | Version | Architectures |
trixie | 1.14.6 | all |
jessie | 1.4 | all |
stretch | 1.7 | all |
buster | 1.10 | all |
bullseye | 1.14.2 | all |
bookworm | 1.14.5 | all |
sid | 1.14.6 | all |
Debtags of package science-neuroscience-modeling: |
role | metapackage |
suite | debian |
|
License: DFSG free
|
This metapackage will install Debian packages which might be useful for
scientists interested in modeling of real neural systems at different
levels (from single neuron to complex networks).
The selection of packages is targeting the application of simulation
techniques. Methods developers are referred to the
science-statistics, science-imageanalysis,
science-numericalcomputation, med-imaging, and med-imaging-dev
metapackages for a variety of additional software that might be
useful for neuroscience research.
|
|
stimfit
Program for viewing and analyzing electrophysiological data
|
Versions of package stimfit |
Release | Version | Architectures |
bookworm | 0.16.0-1.2 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
jessie | 0.13.19-1 | amd64,armel,armhf,i386 |
buster | 0.15.8-1 | amd64,arm64,armhf,i386 |
sid | 0.16.0-1.2 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bullseye | 0.16.0-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
Debtags of package stimfit: |
role | program |
uitoolkit | wxwidgets |
|
License: DFSG free
|
Stimfit is a free, fast and simple program for viewing and analyzing
electrophysiological data. It features an embedded Python shell that
allows you to extend the program functionality by using numerical
libraries such as NumPy and SciPy.
|
|
Packaging has started and developers might try the packaging code in VCS
eegview
Software to display EEG data in realtime
|
Versions of package eegview |
Release | Version | Architectures |
VCS | 0.0-1 | all |
|
License: GPL-3+
Debian package not available
Version: 0.0-1
|
This software allows one to display EEG signal in realtime as well as
record them. It is the minimal recording panel needed to do simple
experiment.
|
libmcpanel-dev
Library to display multichannel data in realtime (Developement files)
|
Versions of package libmcpanel-dev |
Release | Version | Architectures |
VCS | 0.0-1 | all |
|
License: GPL-3+
Debian package not available
Version: 0.0-1
|
This package provides a library written in C implementing a set of widgets
designed to view in realtime multichannels signals. Despite it has been
initially design to view signals coming from a BIOSEMI Activetwo EEG
system, it is totally system agnostic and any user of other system might
find it useful.
This package contains the files needed to compile and link programs which
use mcpanel
|
IO library for electrophysiological data formats in Python
|
|
License: BSD
Debian package not available
Language: Python
|
NEO stands for Neural Ensemble Objects and is a project to provide common
class names and concepts for dealing with electro-physiological (in vivo
and/or simulated) data with the aim of getting OpenElectrophy, NeuroTools,
G-node and maybe other projects with similar goals more close together.
In particular Neo provides:
- a set a classes with precise definitions
- an IO module that offer a simple API that fit many formats
- documentation.
- a set of examples like a format convertor
|
openelectrophy
data analysis GUI for intra- and extra-cellular recordings
|
Versions of package openelectrophy |
Release | Version | Architectures |
VCS | 0.0.svn143 | all |
|
License: free
Debian package not available
Version: 0.0.svn143
|
This package provides the startup script for the OpenElectrophy GUI.
|
Unofficial packages built by somebody else
eeglab
toolbox for processing and visualization of electrophysiological data
|
|
License: GPL-2+
Language: C, Matlab/Octave
|
EEGLAB is an interactive Matlab toolbox for processing continuous and
event-related EEG, MEG and other electrophysiological data
incorporating independent component analysis (ICA), time/frequency
analysis, artifact rejection, event-related statistics, and several
useful modes of visualization of the averaged and single-trial data.
Please register by following this link if you are using eeglab.
Please cite:
Delorme A and Makeig S:
EEGLAB: an open source toolbox for analysis of single-trial EEG dynamics
(2004)
|
No known packages available but some record of interest (WNPP bug)
Data Acquisition and Neural Spike Processing Software
|
|
License: GPL-2+
Debian package not available
Language: C
|
BlueSpike is an electrophysiology tool to perform real-time data
acquisition, visualization and sorting of neuronal spikes. It
continuously acquires data every 1 ms and realizes digital signal
processing on retrieved data. Contains four components:
- KernelSpike: a kernel module.
- SpikeViewever
- SpikeSorter
- Channel Reviewer
Please cite:
Mehmet Kocaturk <kocaturk@gmail.com> et al.:
Real-time experimental interface for electrophysiology experiments
(2010)
|
tools for recording from MEAs and RT processing
|
|
License: GPL-2+
Debian package not available
Language: C++
|
Meabench is a set of interacting linux programs for recording data
from MEAs and real time processing. It can be used to acquire and
visualize data from MultiChannel Systems multi-electrode array
hardware in real time. On-line spike detection is available, as well
as suppression of artifacts induced by 60 Hz pickup and by
stimulation. A growing number of small utilities for data analysis is
included with the source code, and you can easily add your
own. Meabench provides continuous and triggered recording of raw
electrode data as well as extracted spike data. Meabench is very
suitable for real-time feedback stimulation, since roundtrip times
from pre-amplifier to stimulator is less than 200 ms worst-case (less
than 50 ms average).
|
framework for closed-loop neurophysiological experiments
|
|
License: GPL-2+
Debian package not available
Language: C++
|
RELACS is designed as an framework for closed-loop experiments that
may considerably speed up this traditional approach and in addition
offers novel experimental possibilities. In a closed-loop experiment
a stimulus is presented, the resulting response is immediately
analyzed, and properties of the next stimulus (e.g. mean
intensity) are adjusted as needed.
RELACS comes with an extensive set of data-analysis functions. The
functions are implemented in C++ to allow fast and memory efficient
data-analysis as it is required for closed-loop experiments:
- Basic statistics (e.g. mean, standard deviation)
- Spectral analysis: power spectrum, transfer function, coherence
- Linear and nonlinear fits (Levenberg-Marquardt and Simplex)
- Peak detection
- Histograms, interpolation
- Stimulus generation: pulse, saw tooth, band-pass filtered white
noise, Ornstein-Uhlenbeck noise
- Firing rates: mean, binned, convolved with kernels (e.g. rectangle,
triangle, Gaussian)
- Interspike intervals: histogram, CV, serial correlation, etc.
- Spike timing precision: vector strength, reliability, correlation,
synchrony etc.
RELACS plugin infrastructure allows to adapt it to specific hardware
drivers and they allow you to implement research protocols, filters,
spike detectors, etc.
|
GUI application for navigating, analyzing and visualizing electrophysiological datasets
|
|
License: promised MIT or BSD-3
Debian package not available
Language: Python
|
Based on the neo framework, it works with a wide variety of data
formats. Plugin interfaces allow for rapid extension with custom
analyses.
|
No known packages available
chronus
platform for analysis of neural signals
|
|
License: GPL-2+
Debian package not available
Language: C, Matlab/Octave
|
Chronux is a Matlab toolbox for signal processing of neural time
series data, several specialized mini-packages for spike sorting,
local regression, audio segmentation and other tasks. It also
includes a graphical user interface (GUI). The current version of
the GUI contains a number of features specialised to the analysis of
electroencephalography (EEG) data. The eventual aim is to provide
domain specific user interfaces (UIs) for each experimental modality,
along with corresponding data management tools.
Please register by following this link if you are using chronus.
|
mclust
Matlab toolbox for clustering of electrophysiologic recordings
|
|
License: non-DFSG (restrictions: modifications, attribution)
Debian package not available
Language: C/C++, Matlab
|
MClust is a toolbox which enables a user to perform automated and
manual clustering on single-electrode, stereotrode, and tetrode
recordings. It allows manual corrections to automated clustering
results. It outputs t-files, which contain (after a header) a list
of timestamps in binary format. Timestamps are 32-bit longs at a
resolution of 10 timestamps/ms.
|
neurodata
suite to analyze data acquired from electrophysiology experiments
|
|
License: GPL-2+
Debian package not available
Language: C++, Octave/Matlab, Perl
|
Currently, neurodata has an Octave/MATLAB program to analyze
electroneurogram traces of coupled oscillators, and a Perl library
for the analysis of voltage trace data.
|
nspike
electrophysiological and behavioral data collection
|
|
License: GPL-2+
Debian package not available
Language: C++
|
This project is a electrophysiological and behavioral data collection
program that can distribute data collection tasks across multiple
machines. It is designed to interface with the NSpike hardware
system.
|
patchclamp
recorder of single-channel and whole-cell currents
|
|
License: GPL-2+
Debian package not available
Language: C/C++
|
The ultimate aim is to create an extremely user-friendly software to
perform the most common tasks of recording single channels and
whole-cell currents
|
pymeg
suite for analysis of magnetoencephalography (MEG) data
|
|
License: GPL-3
Debian package not available
Language: Python
|
PyMEG is a project in Python to do various neuroimaging processing
with magnetoencephalography (MEG) data. The purpose of this project,
is to create a suite of functions to do MEG analysis in Python.
|
qrtailab
|
|
License: LGPL-2
Debian package not available
|
QRtaiLab is a QT-based port of the software scope xrtailab of the
RTAI project. It can be used as virtual oscilloscope and monitoring
application for interacting with the real-time external.
|
rtxi
real-time data acquisition and control applications in biological research
|
|
License: GPL-2+
Debian package not available
Language: C++
|
The Real-Time eXperiment Interface (RTXI) is a collaborative
open-source software development project aimed at producing a
real-time Linux based software system for hard real-time data
acquisition and control applications in biological research.
Core functionality of RTXI gets extended via plugins, such as
- Data Recorder
- Virtual Dendrite
- Spike-triggered Average
- Phase Response Curve
- Signal processing
|
spike
spike train analysis toolbox
|
|
License: BSD-3 and Academic Free License
Debian package not available
Language: C++, Octave/Matlab
|
This toolbox implements several information-theoretic spike train analysis
techniques. This implementation behaves like a typical MATLAB toolbox, but
the underlying computations are coded in C and optimized for efficiency.
|
trellis-neuro
interface to neurophysiology data acquisition and stimulation instruments
|
|
License: GPL-3+ and LGPL-3+
Debian package not available
Language: C, C++
|
Trellis-Neuro is an Open Source, multi-platform application suite for
interfacing with neurophysiology data acquisition and stimulation
instruments. It is based on the eXtensible Instrument Processing
Protocol (XIPP), QT 4, and C/C++.
|
|