PAN Blend imaging packages

Tento program poskytuje grafické rozhranie na vedeckú analýzu bodových dát s hodnotami v reálnych číslach (x,y,z,hodnota). Je primárne zameraný na aplikácie APT (Atom Probe Tomography), ale môže byť užitočná aj na iné aplikácie.

This metapackage will install large astronomical data analysis frameworks, which usually provide their own script language. Please notice that the Gnu Data Language has its own metapackage astro-gdl, IRAF is in astro-iraf, and the Astropy framework is in the astro-python3 metapackage.

GDL (GNU Data Language) je slobodná náhrada za komerčný softvér IDL (Interactive Data Language). Na úrovni syntaxe je plne kompatibilný s IDL 7.1 a je použiteľný na alanýzu astronomických dát. Tento metabalík nainštaluje balíky súvisiace s astronómiou použiteľný s GDL; obzvlášť s IDL Astronomy Users Library.

Tento metabalík nainštaluje balíky jazyka Python 3 pre astronómiu. Tieto balíky je možné využiť na interaktívnu analýzu alebo na tvorbu špecifických programov.

The astropy package contains core functionality and some common tools needed for performing astronomy and astrophysics research with Python.

This package contains the tools that come with astropy:

• fitscheck: Detect and fix FITS standards violations
• fits2bitmap: Create a bitmap file from a FITS image.
• fitsdiff: Compare two FITS image files and report the differences in header keywords and data.
• fitsheader: Print the header(s) of one or more FITS file(s) to the standard output in a human-readable format.
• samp_hub: SAMP Hub Server.
• volint: Check a VOTable file for compliance to the VOTable specification
• wcslint: Check the WCS keywords in a FITS file for compliance against the standards

The presented ParaView plugin allows easy access to the algorithm described in Ref 1. It enables analysis of faceted objects that exhibit distortions in their digital representation, e.g. due to tomographic reconstruction artifacts. The contributed functionality can also be used outside ParaView in e.g. command-line programs. The code, data, a test and an example program are included.

Ref 1: Roman Grothausmann, Sebastian Fiechter, Richard Beare, Gaëtan Lehmann, Holger Kropf, Goarke Sanjeeviah Vinod Kumar, Ingo Manke, and John Banhart. Automated quantitative 3D analysis of faceting of particles in tomographic datasets. Ultramicroscopy, 122(0):65 – 75, 2012. ISSN 0304- 3991. doi: 10.1016/j.ultramic.2012.07.024.

Giza is a lightweight scientific plotting library built on top of cairo that provides uniform output to multiple devices. Giza also provides a mostly compatible, modern replacement for the PGPLOT graphics library.

This package contains the development files.

Gmsh is a 3D finite element grid generator with a build-in CAD engine and post-processor. Its design goal is to provide a fast, light and user-friendly meshing tool with parametric input and advanced visualization capabilities. Gmsh is built around four modules: geometry, mesh, solver and post-processing. The specification of any input to these modules is done either interactively using the graphical user interface or in ASCII text files using Gmsh's own scripting language.

See Gmsh's reference manual for a more thorough overview of Gmsh's capabilities.

GNU Data Language (GDL) is a free IDL (Interactive Data Language) compatible incremental compiler. It has full syntax compatibility with IDL 7.1. IDL is a registered trademark of ITT Visual Information Solutions. From IDL 8.0, the following language elements are supported:

• FOREACH loop
• negative array indices
• garbage collection pointers and objects
• call methods on an object using "." (e. g. object.aMemberProcedure,arg1)

The file input output system is fully implemented. GUI support (widgets) is officially provided, but it's not complete yet.

This package contains the main commandline and interpreter frontend.

Gnuplot je portabilný nástroj na interaktívne kreslenie dát a funkcií riadený z príkazového riadka, podporujúci mnoho výstupných formátov vrátane ovládačov mnohých tlačiarní, (La)TeX, (x)fig, Postscript atď. Výstup do X11 nájdete v balíku gnuplot-x11.

S dátovými súbormi a funkciami je možné pracovať pomocou jazyka podobného jazyku C. Dokáže vyhladzovať, prekladať krivkou, nelineárne prekladanie krivkou a pracovať s komplexnými číslami.

Tento balík slúži na inštaláciu plnohodnotného gnuplot (-qt, -x11 or -nox).

Knižnicu gphoto2 môžu aplikácie využívať na prístup k rozličným modelom digitálnych fotoaparátov prostredníctvom štandardných protokolov ako Hromadné úložné zariadenie USB a PTP alebo protokolov konkrétnych výrobcov.

Tento balík poskytuje rozhranie príkazového riadka ku knižnici gphoto2.

Grace je nástroj na vykresľovanie v dvoch rozmeroch pomocou myši. Toto je program, ktorý bol v minulosti známy ako Xmgr.

Niektoré z jeho vlastností: používateľom definované škálovanie, zaškrtávanie, menovky, symboly, štýly čiar, polynomiálna regresia, krivky, pohyblivé priemery, DFT/FFT, krážová- a auto-korelácia, dávkový režime na bezobslužné vykresľovanie a podpora tlačenia do PostScript, FrameMaker a niekoľkých formátov obrázkov.

Kreslenie grafov sa zaoberá problémom vizualizácie štrukturálnych informácií zostavením geometrických reprezentácií abstraktných grafov a sietí. Automatická tvorba kresieb grafov má dôležité aplikácie v kľúčových technológiách ako návrh databáz, softvérové inžinierstvo, VLSI a návrh sietí a vizuálnych rozhraní v iných doménach. Medzi situácie, kde tieto nástroje môžu byť obzvlášť užitočné patrí:

• chcete reštrukturalizovať program a najprv chcete pochopiť vzťahy medzi jeho typmi, procedúrami a zdrojovými súbormi,
• potrebujete nájsť úzke miesta na chrbticovej internetovej sieti - nielen jednotlivé spojenia, ale aj ich vzťahy,
• ladíte protokol alebo mikroarchitektúru reprezentovanú konečným stavovým automatom a potrebujete zistiť, ako nastáva istý chybový stav,
• chcete prehliadať schému databázy, bázy znalostí alebo grafickú reprezentáciu distribuovaného programu,
• chcete vidieť prehľad kolekcie navzájom prepojených dokumentov,
• chcete objaviť vzory a záujmové komunity v databáze telefónnych hovorov alebo emailových správ.

Tento balík obsahuje nástroje pre príkazový riadok.

Gri is an open-source language for scientific graphics programming. It is command-driven, as opposed to point/click. Some users consider Gri similar to LaTeX, since both provide extensive power as a reward for tolerating a learning curve. The output is industry-standard PostScript as output, suitable for inclusion in other documents.

Gri can make x-y graphs, contour graphs, and image graphs. Fine control is provided over all aspects of drawing, e.g. line widths, colors, fonts, etc. Greek letters and mathematical symbols are available in a TeX-like syntax.

Folks who write 1000-line Gri scripts usually start with something as simple as the following:

  open file.dat        # open a file
  read columns x * y   # read the 1st column as x and the 3rd as y
  draw curve           # draw the data and autoscale the axes

A full manual is also available in HTML (gri-html-doc package), in PDF suitable for printing (gri-pdf-doc package) and on-line by following links from the gri home page:

  http://gri.sourceforge.net/

Gwyddion je modulárny program na vizualizáciu a analýzu dát mikroskopie skenujúcej sondou (SPM - Scanning Probe Microscopy). Je primárne určený na analýzu výškových dát získaných mikroskopickými technikami ako sú

• atómová silová mikroskopia (AFM - Atomic Force Microscopy)
• magnetická silová mikroskopia (MFM - Magnetic Force Microscopy)
• mikroskopia skenujúca tunelovaním (STM - Scanning Tunneling Microscopy)
• optická mikroskopia skenovania blízkym poľom (SNOM alebo NSOM - Near-field Scanning Optical Microscopy)

a ďalšie. Možno ju však použiť na analýzu ľubovoľne hlboké pole a analýzu obrazu.

IFRIT (Ionization FRont Interactive Tool) má pôvod v špecializovanom nástroji, navrhnutom na vizualizáciu ionizačných frontov v kozmologických numerických simuláciách. IFRIT však prerástol pôvodný projekt a dnes dokáže vizualizovať aj všeobecné dátové sady.

IFRIT je napísaný v C++ a je založený na dvoch najmodernejších sadách nástrojov: Visualization ToolKit (VTK) a grafická sada nástrojov Qt.

Dokáže zobrazovať, upravovať, analyzovať, spracúvať, ukladať a tlačiť 8- bitové, 16-bitové a 32-bitové obrázky. Číta mnohé obrazové formáty vrátane TIFF, GIF, JPEG, BMP, DICOM, FITS a „raw“. Podporuje „zásobníky“ - série obrázkov, ktoré sa nachádzajú v jednom okne.

Dokáže počítať plochy a štatistiky hodnôt pixlov používateľom vybraných oblastí. Dokáže merať vzdialenosti a uhly. Dokáže tvoriť histogramy hustoty a čiarové profilové kresby. Podporuje štandardné funkcie spracovania obrazu ako zmena kontrastu, zaostrovanie, vyhladzovanie, detekcia hrán a mediánové filtrovanie.

Priestorová kalibrácia poskytuje priestorové miery reálneho sveta ako milimetre. Tiež je dostupná kalibrácia hustoty a škály šedej.

ImageJ vyvíja Wayne Rasband (wayne@codon.nih.gov) na Research Services Branch, National Institute of Mental Health, Bethesda, Maryland, USA.

Imview is an application which

• Displays a large number of image formats.
• Displays 2D or 3D (as slices) images with a very good zoom and pan feature.
• Works with multi-spectral, time series or multi-page documents (e.g.: Satellite images, TIFF stacks, animated GIFs and heterogeneous multi-component files).
• Displays all pixel types (1-bit to 64-bit data, integer or floating point).
• Arbitrary 1-D profile of 2-D images (or of 2-D slices of 3-D images) can be displayed.
• Has support for arbitrary colourmaps for all pixel types (i.e.: false colour display).
• Has standard image manipulation facilities (brightness/contrast, gamma, zoom, crop, rotation, etc).
• Can be controlled remotely via sockets and text commands (for easy integration into various image analysis systems).
• Images can be uploaded into Imview via sockets or shared memory.
• And much more!

Kst is a fast real-time large-dataset viewing and plotting tool. It has basic data analysis functionality, contains many powerful built-in features and is expandable with plugins and extensions.

Spectromicroscopy combines spectral data with microscopy, where typical datasets consist of a stack of microscopic images taken across an energy range. Due to the data complexity, manual analysis can be time consuming and inefficient, whereas multivariate analysis tools not only reduce the time needed but also can uncover hidden trends in the data.

Mantis is Multivariate ANalysis Tool for Spectromicroscopy developed in Python by 2nd Look Consulting. It uses principal component analysis and cluster analysis to classify pixels according to spectral similarity.

MayaVi2 is a cross-platform tool for 2-D and 3-D scientific data visualization. Its features include:

• Visualization of scalar, vector and tensor data in 2 and 3 dimensions
• Easy scriptability using Python
• Easy extendability via custom sources, modules, and data filters
• Reading several file formats: VTK (legacy and XML), PLOT3D, etc.
• Saving of visualizations
• Saving rendered visualization in a variety of image formats.

MayaVi2 has been designed with scriptability and extensibility in mind. While the mayavi2 application is usable by itself, it may be used as an Envisage plugin which allows it to be embedded in user applications natively. Alternatively, it may be used as a visualization engine for any application.

This package also provides TVTK, which wraps VTK objects to provide a convenient, Pythonic API, while supporting Traits attributes and NumPy/SciPy arrays. TVTK is implemented mostly in pure Python, except for a small extension module.

This metapackage will install Debian packages which might be useful in medical image processing and visualization.

On one hand, it installs several packages supporting various image file formats and image management, like DICOM (Digital Imaging and Communications in Medicine) which is the de-facto standard for medical image management, and NIFTI. On the other hand, it provides a variety of software packages that can be used for visualization and for image processing - either from a graphical user interface, the command line, or implemented in workflows.

OVITO is a visualization and analysis software for atomistic simulation data. Being a single integrated application it covers both the analysis and the visualization of large-scale atomistic datasets produced by molecular dynamics/statics and Monte-Carlo simulation codes. Its name is an acronym for Open Visualization Tool, emphasizing that the software has been designed with flexibility and extensibility in mind.

ParaView je open source multiplatformná aplikácia na vizualizáciu dát, od malých po veľmi veľké. Medzi ciele projektu ParaView patrí:

• vývoj open source multiplatformnej aplikácie na vizualizáciu dát
• podpora distribuovaných výpočtových modelov na spracovanie veľkých dát
• tvorba otvoreného, flexibilného a intuitívneho používateľského rozhrania
• vývoj rozšíriteľnej architektúry založenej na otvorených štandardoch

ParaView beží na paralelných, distribuovaných systémoch so zdieľanou pamäťou aj na jednoprocesorových systémoch a bol úspešne odskúšaný na Windows, Mac OS X, Linux a rôznych unixových pracovných staniciach, klastroch a superpočítačoch. Pod kapotou ParaView používa Visualization Toolkit na spracovanie dát a vykresľovanie a má používateľské rozhranie napísané v Qt.

PDL gives standard perl the ability to COMPACTLY store and SPEEDILY manipulate the large N-dimensional data arrays which are the bread and butter of scientific computing. The idea is to turn perl in to a free, array-oriented, numerical language in the same sense as commercial packages like IDL and MatLab. One can write simple perl expressions to manipulate entire numerical arrays all at once. For example, using PDL the perl variable $a can hold a 1024x1024 floating point image, it only takes 4Mb of memory to store it and expressions like $a=sqrt($a)+2 would manipulate the whole image in a few seconds.

A simple interactive shell (perldl) is provided for command line use together with a module (PDL) for use in perl scripts.

PlotDrop is designed for quick simple visualisation of 2D data series. It is intended to be used in tandem with an external filesystem browser such as GNOME's nautilus or KDE's konqueror. Files containing data are added by dragging them from the browser to the file list.

APLpy is a Python module aimed at producing publication-quality plots of astronomical imaging data in FITS format. The module uses Matplotlib, a powerful and interactive plotting package. It is capable of creating output files in several graphical formats, including EPS, PDF, PS, PNG, and SVG.

AstroML is a Python 3 module for machine learning and data mining built on numpy, scipy, scikit-learn, and matplotlib. It contains a growing library of statistical and machine learning routines for analyzing astronomical data in Python, loaders for several open astronomical datasets, and a large suite of examples of analyzing and visualizing astronomical datasets.

AstroML is a Python module for machine learning and data mining built on numpy, scipy, scikit-learn, and matplotlib. It contains a growing library of statistical and machine learning routines for analyzing astronomical data in Python, loaders for several open astronomical datasets, and a large suite of examples of analyzing and visualizing astronomical datasets.

This package contains the performance add-ons of the Python 3 version of the package.

Balík astropy obsahuje základné funkcie a niekoré bežné nástroje na výskum v oblasti astronómie a astrofyziky v jazyku Python. Je možné ho rozšíriť o niekoľko „súvisiacich balíkov“, ktoré spolupracujú so základným balíkom.

Cartopy is a Python package designed to make drawing maps for data analysis and visualisation easy.

It features:

• object oriented projection definitions
• point, line, polygon and image transformations between projections
• integration to expose advanced mapping in matplotlib with a simple and intuitive interface
• powerful vector data handling by integrating shapefile reading with Shapely capabilities

This package provides the Python 3 library.

Tento modul dokáže vypisovať zoznam, konfigurovať a spúšťať recepty založené na CPL z jazyka Python 3. Vstupné, kalibračné a výstupné dáta je možné zadať ako súbory FITS alebo ako pamäťové objekty astropy.

CPL (Common Pipeline Library) sa skladá z množiny knižníc v ISO C poskytujúcich kompletnú, efektívnu a robustnú sadu softvérových nástrojov. Tvorí základ na tvorby automatizovaných úloh redukcie dát v astronómii.

Jednou z funkcií, ktoré CPL poskytuje je schopnosť tvoriť algoritmy na redukciu dát bežiace ako zásuvné moduly (dynamické knižnice). Tie sa nazývajú „recepty“ a sú jedným z hlavných aspektov vývojového prostredia CPL na redukciu dát.

Fitsio provides an easy to use object-oriented API including providing a Numpy interface to FITS files read from CFITSIO. It allows direct access to the columns of a FITS binary table which can be useful for reading large fits files. Compared to astropy.io.fits, this package is closer to the underlying cfitsio library.

Fitsio also exposes a microlanguage (implemented in CFITSIO) for making efficient SQL-like queries of tables (single tables only though–no joins or anything like that).

Gammapy is an in-development affiliated package of Astropy that builds on the core scientific Python stack to provide tools to simulate and analyse the gamma-ray sky for telescopes such as CTA, H.E.S.S., VERITAS, MAGIC, HAWC and Fermi-LAT.

GNU Data Language (GDL) is a free IDL (Interactive Data Language) compatible incremental compiler. It has full syntax compatibility with IDL 7.1. IDL is a registered trademark of ITT Visual Information Solutions. From IDL 8.0, the following language elements are supported:

• FOREACH loop
• negative array indices
• garbage collection pointers and objects
• call methods on an object using "." (e. g. object.aMemberProcedure,arg1)

The file input output system is fully implemented. GUI support (widgets) is officially provided, but it's not complete yet.

This package contains the Python library/interface.

Gnuplot.py je modul jazyka Python, ktorý je rozhraním ku gnuplot, populárnemu vykresľovaciemu programu. Umožňuje vám používať gnuplot z Pythonu a vykresľovať polia z pamäti, dátových súborov alebo matematických funkcií. Ak používate Python na výpočty alebo na spájanie numerických programov, môžete použiť tento modul na dynamické vykresľovanie dát počas počítania. Kombinácia s Pythonom uľahčuje automatizáciu, vrátane tvorby hrubých „animácií“ postupným vykresľovaním rôznych dátových sád.

The guiqwt Python library provides efficient 2D data-plotting features (curve/image visualization and related tools) for signal/image processing application development and interactive computing. It's based on the scientific modules NumPy and SciPy, and the PyQwt plotting widgets for PyQt4 graphical user interfaces.

This is the Python 3 version of the package.

HyperSpy is an open source Python library for the interactive analysis of multidimensional datasets that can be described as multidimensional arrays of a given signal (for example, a 2D array of spectra, also known as a spectrum image).

HyperSpy makes it straightforward to apply analytical procedures that operate on an individual signal to multidimensional arrays, as well as providing easy access to analytical tools that exploit the multidimensionality of the dataset.

Its modular structure makes it easy to add features to analyze many different types of signals.

Imexam is an affiliated package of AstroPy. It was designed to be a lightweight library which enables users to explore data using common methods which are consistent across viewers. It can be used from a command line interface, through a Jupyter notebook or through a Jupyter console. It can be used with multiple viewers, such as DS9 or Ginga, or without a viewer as a simple library to make plots and grab quick photometry information.

MoviePy is a Python library for video editing: cutting, concatenations, title insertions, video compositing (a.k.a. non-linear editing), video processing, and creation of custom effects.

Fast, interactive, multi-dimensional image viewer for Python. It's designed for browsing, annotating, and analyzing large multi-dimensional images. It's built on top of Qt (for the GUI), vispy (for performant GPU-based rendering), and the scientific Python stack (numpy, scipy).

Balík jazyka Python na syntaktickú analýzu, čítanie a zápis súborov Microsoft OLE2 (tiež sa nazývajú Structured Storage, Compound File Binary Format alebo Compound Document File Format) ako sú dokumenty Microsoft Office 97-2003, vbaProject.bin v súboroch MS Office 2007+, súbory Image Composer a FlashPix, súbory Outlook MSG, StickyNotes, niekoľko formátov súborov Microscopy, súbory karantény antivírusu McAfee.

Photutils contains functions for:

• estimating the background and background rms in astronomical images
• detecting sources in astronomical images
• estimating morphological parameters of those sources (e.g., centroid and shape parameters)
• performing aperture and PSF photometry

This package contains the Python 3 version of the package.

PyQtGraph je knižnica na grafiku a používateľské rozhrania v čistom jazyku Python na použitie v matematických, vedeckých a inžinierskych aplikáciách. Napriek tomu, že je knižnica napísaná kompletne v jazyky Python, je veľmi rýchla vďaka tomu, že využíva numpy na počítanie a platformu Qt GraphicsView na rýchle zobrazovanie.

Toto je verzia balíka pre Python 3.

Seaborn is a library for making attractive and informative statistical graphics in Python. It is built on top of matplotlib and tightly integrated with the PyData stack, including support for numpy and pandas data structures and statistical routines from scipy and statsmodels.

Some of the features that seaborn offers are

• Several built-in themes that improve on the default matplotlib aesthetics
• Tools for choosing color palettes to make beautiful plots that reveal patterns in your data
• Functions for visualizing univariate and bivariate distributions or for comparing them between subsets of data
• Tools that fit and visualize linear regression models for different kinds of independent and dependent variables
• A function to plot statistical timeseries data with flexible estimation and representation of uncertainty around the estimate
• High-level abstractions for structuring grids of plots that let you easily build complex visualizations

This is the Python 3 version of the package.

scikit-image is a collection of image processing algorithms for Python. It performs tasks such as image loading, filtering, morphology, segmentation, color conversions, and transformations.

This package provides the Python 3 module.

The specutils package implements base classes and utilities for interacting with astronomical spectra in Python and the Astropy project. It is intended for eventual merger with the astropy package, but for now is being developed independently.

Vispy is a high-performance interactive 2D/3D data visualization library.

Vispy leverages the computational power of modern Graphics Processing Units (GPUs) through the OpenGL library to display very large datasets.

This package provides VisPy for the Python 3 interpreter.

WCSAxes is a framework for making plots of Astronomical data in Matplotlib. It is affiliated with the Astropy project and is intended for inclusion in the Astropy package once stable.

This package contains the Python 3 version of the package.

Willow is a simple image library that combines the APIs of Pillow, Wand and OpenCV. It converts the image between the libraries when necessary.

Willow currently has basic resize and crop operations, face and feature detection and animated GIF support. New operations and library integrations can also be easily implemented.

Qtiplot is a fully fledged plotting software similar to the OriginLab Origin software (See http://www.originlab.com for more information about Origin).

It can make two and three dimensional plots of publication quality, both from datasets and functions. It can do non-linear fitting and multi-peak fitting.

Some Features:

• Cross platform: works natively on Windows, Mac OS X and Linux/Unix systems
• Fully Python scriptable
• OpenGL based 3D plotting
• Publication quality plots and easy export to various image formats (EMF, EPS, PS, PDF, SVG, BMP, JPG, PNG, TIFF, etc ...)
• Easy integration with LaTeX typesetting system
• Powerful and versatile spreadsheets with column-logic calculations and easy import/export of multiple files
• One-click access to extensive built-in data analysis routines
• Advanced statistical analysis: Student's t-Test, ANOVA, chi-square test for variance, normality test (Shapiro-Wilk)
• Linear and nonlinear curve fitting with weighting and estimation of statistical errors of the fit-parameters
• Multi-peak fitting
• Image analysis tools
• Templates support: all settings for plots, tables and matrices can be saved and restored later on for a fast editing process
• Project files based on folders, a powerful project explorer with built-in drag and drop and searching facilities
• Full import of Excel workbooks and Open Document Format spreadsheets, dBase, SQLite and Microsoft Access databases

RasMol je program na molekulárnu grafiku s účelom vizualizácie proteínov, nukleových kyselín a malých molekúl. Program je určený na zobrazovanie, výuku a tvorbu obrázkov v tlačovej kvalite.

Program načíta súbor so súradnicami molekúl a interaktívne zobrazuje molekulu na obrazovke v rozličných farebných schémach a reprezentáciách molekúl. Medzi momentálne dostupné reprezentácie patria hĺbkové drôtené modely, „Dreidingove“ paličky, gule vypĺňajúce priestor (CPK), gule a paličky, pevné a zreťazené biomolekulárne reťazce, označenia atómov a bodové povrchy.

Medzi podporované vstupné formáty patria Protein Data Bank (PDB), formáty Alchemy od Tripos Associates a Sybyl Mol2, formát (MDL) Mol od Molecular Design Limited, XYZ (XMol) od Minnesota Supercomputer Center (MSC), formát CHARMm, formát CIF a formát mmCIF.

Tento balík nainštaluje dve verzie RasMol, rasmol-gtk s moderným používateľským rozhraním založeným na GTK a rasmol-classic so starým rozhraním Xlib.

RELION (for REgularised LIkelihood OptimisatioN) is a stand-alone computer program for Maximum A Posteriori refinement of (multiple) 3D reconstructions or 2D class averages in cryo-electron microscopy.

RELION provides a GUI, several command-line tools in parallel (MPI) and serial versions, optionally with CUDA/GPU support.

relion provides the serial and parallel (MPI) command-line tools without CUDA/GPU support.

RELION (for REgularised LIkelihood OptimisatioN) is a stand-alone computer program for Maximum A Posteriori refinement of (multiple) 3D reconstructions or 2D class averages in cryo-electron microscopy.

RELION provides a GUI, several command-line tools in parallel (MPI) and serial versions, optionally with CUDA/GPU support.

relion-gui provides the graphical user interface without CUDA/GPU support.

Bayesian analysis of blinking and bleaching, or 3B microscopy, is a method which analyses data in which many overlapping fluorophores undergo bleaching and blinking events, giving the structure at enhanced resolution. By using a Hidden Markov Model (HMM), it allows useful information to be obtained from data that would be impossible to analyse with standard localisation analysis techniques.

This package contains the command-line tool.

Bayesian analysis of blinking and bleaching, or 3B microscopy, is a method which analyses data in which many overlapping fluorophores undergo bleaching and blinking events, giving the structure at enhanced resolution. By using a Hidden Markov Model (HMM), it allows useful information to be obtained from data that would be impossible to analyse with standard localisation analysis techniques.

This package contains the ImageJ plugin.

Veusz is a 2D and 3D scientific plotting and graphing package, designed to produce publication-ready PDF, SVG, Postscript and bitmap output. Veusz provides a GUI, command line and scripting interface (based on Python) to its plotting facilities. The plots are built using an object-based system to provide a consistent interface.

This package includes the main executable, documentation and examples.

RELION (for REgularised LIkelihood OptimisatioN) is a stand-alone computer program for Maximum A Posteriori refinement of (multiple) 3D reconstructions or 2D class averages in cryo-electron microscopy.

RELION provides a GUI, several command-line tools in parallel (MPI) and serial versions, optionally with CUDA/GPU support.

relion-cuda provides the serial and parallel (MPI) command-line tools with CUDA/GPU support.

RELION (for REgularised LIkelihood OptimisatioN) is a stand-alone computer program for Maximum A Posteriori refinement of (multiple) 3D reconstructions or 2D class averages in cryo-electron microscopy.

RELION provides a GUI, several command-line tools in parallel (MPI) and serial versions, optionally with CUDA/GPU support.

relion-gui-cuda provides the graphical user interface with CUDA/GPU support.