Debian Med Physics packages

Based on BioSig library, this package provides command line tools, such as

• save2gdf: converter between different file formats, including but not limited to SCP-ECG(EN1064), HL7aECG (FDA-XML), GDF, EDF, BDF, CWFB.
• biosig2gdf: converts biosig data files into GDF, to simplify parsing and loading by scripting languages (e.g. loadgdf.{py,r})
• rec2bin, bin2rec, heka2itx, save2aecg, save2scp: several converter tools based on save2gdf
• biosig_fhir: packs biosignal data into HL7/FHIR binary template file.
• physicalunits: converter for encoding and decoding of physical units according to ISO 11073-10101

GDF (General Dataformat for Biosignals) is intended to provide a generic storage for biosignals, such as EEG, ECG, MEG etc.

This package provides the tool shipped with the library (gdf_merger).

Octave is a (mostly MATLAB® compatible) high-level language, primarily intended for numerical computations. It provides a convenient command-line interface for solving linear and nonlinear problems numerically.

Octave can be dynamically extended with user-supplied C++ files.

CERNLIB je kolekce nástrojů datové analýzy, knihoven vytvořených pro použití ve fyzikálních experimentech a konečně i aplikací určených k jiným úkolům jako je použití v biologii.

PAW je interaktivní program obsahující interaktivní prezentační a statistické a matematické nástroje. Je vytvořen tak, aby pracoval s objekty známými z fyziky jako jsou histogramy, soubory událostí (Ntuples), vektory, atd.

Program je na 64b architektuře linkován staticky proti knihovnám CERN. Je to především z důvodu stability programu, protože jeho kód se nechová v 64b prostředí zcela nejlépe.

CERNLIB je kolekce nástrojů datové analýzy, knihoven vytvořených pro použití ve fyzikálních experimentech a konečně i aplikací určených k jiným úkolům jako je použití v biologii.

Tento balíček obsahuje Paw++, interaktivní program používaný při analýze a grafické prezentaci. Paw++ dělá to samé jako PAW (obsažený v balíčku "paw"), ale má mnohem příjemnější grafické uživatelské rozhraní kompilované vůči Lesstif.

Program je na 64b architektuře staticky linkován proti knihovnám CERN, je to z důvodu správné funkčnosti programu, neboť jeho konstrukce není zcela kompatibilní s 64b systémem.

R is a system for statistical computation and graphics. It consists of a language plus a run-time environment with graphics, a debugger, access to certain system functions, and the ability to run programs stored in script files.

The design of R has been heavily influenced by two existing languages: Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the resulting language is very similar in appearance to S, the underlying implementation and semantics are derived from Scheme.

The core of R is an interpreted computer language which allows branching and looping as well as modular programming using functions. Most of the user-visible functions in R are written in R. It is possible for the user to interface to procedures written in the C, C++, or FORTRAN languages for efficiency, and many of R's core functions do so. The R distribution contains functionality for a large number of statistical procedures and underlying applied math computations. There is also a large set of functions which provide a flexible graphical environment for creating various kinds of data presentations.

Additionally, several thousand extension "packages" are available from CRAN, the Comprehensive R Archive Network, many also as Debian packages, named 'r-cran-'.

This package is a metapackage which eases the transition from the pre-1.5.0 package setup with its larger r-base package. Once installed, it can be safely removed and apt-get will automatically upgrade its components during future upgrades. Providing this package gives a way to users to then only install r-base-core if they so desire.

BioSig is a library for accessing files in several biomedical data formats (including EDF, BDF, GDF, BrainVision, BCI2000, CFWB, HL7aECG, SCP_ECG (EN1064), MFER, ACQ, CNT(Neuroscan), DEMG, EGI, EEG1100, FAMOS, SigmaPLpro, TMS32). The complete list of supported file formats is available at http://pub.ist.ac.at/~schloegl/biosig/TESTED .

This package provides header files and static library.

This package provides Octave bindings for BioSig library. Primary goal -- I/O interface to variety of biomedical file formats, including but not limited to SCP-ECG(EN1064), HL7aECG (FDA-XML), GDF, EDF.

CERNLIB je kolekce nástrojů datové analýzy, knihoven vytvořených pro použití ve fyzikálních experimentech a konečně i aplikací určených k jiným úkolům jako je použití v biologii.

Tento balíček obsahuje ukázkové skripty PAW a Paw++, testovací skripty které vás ujistí o tom zda se programy PAW a Paw++ chovají korektně. Obsažené příklady a testy můžete spustit spolu s programem paw-demos.

This package provides Python3 bindings for BioSig library. Primary goal -- I/O interface to variety of biomedical file formats, including but not limited to SCP-ECG(EN1064), HL7aECG (FDA-XML), GDF, EDF.

Multiple-tau correlation is computed on a logarithmic scale (less data points are computed) and is thus much faster than conventional correlation on a linear scale such as numpy.correlate

An online reference is available at http://paulmueller.github.io/multipletau

GATE incorporates the Geant4 libraries in a modular, versatile, and scripted simulation toolkit which is adapted to the field of nuclear medicine both in PET (Positron Emission Tomography) and SPECT (Single Photon Emission Computer Tomography). It allows the accurate description of time-dependent phenomena such as source or detector movement and source decay kinetics. The ability to synchronize all time-dependent components allows a coherent description of the acquisition process. It makes it possible to perform realistic simulations of data acquisitions in time.

OpenViBE enables to design, test and use Brain-Computer Interfaces (BCI). OpenViBE is a software for real-time neurosciences (that is, for real-time processing of brain signals). It can be used to acquire, filter, process, classify and visualize brain signals in real time.