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Covid-19 - Quality Assurance

Summary

Autoremovals: 32

Migration issues: 27

CI failures: 73

Install issues: 73

No issues: 81/231

This task exists only for tagging COVID-19 relevant cases

The Debian Med team intends to take part at the COVID-19 Biohackathon (April 5-11, 2020) This task was created only for the purpose to list relevant packages.

pydicom

😟 Autoremoval

😟 CI

😟 Install/upgrade

Package marked for automatic removal:

  • Will be removed on: 2024-12-12
  • Dependencies leading to autoremoval: mpl-sphinx-theme
  • Bugs in dependencies leading to autoremoval: #1076897

Continuous integration (CI) tests are failing:

Piuparts failed:

python-pbcore

😟 Autoremoval

😟 CI

😟 Install/upgrade

Package marked for automatic removal:

  • Will be removed on: 2024-12-09
  • Dependencies leading to autoremoval: h5py
  • Bugs in dependencies leading to autoremoval: #1080198

Continuous integration (CI) tests are failing:

Piuparts failed:

  • Version: 1.2.7+dfsg-2~bpo8+1
  • Sections: jessie2bpo

snakemake

😟 Autoremoval

😟 CI

😟 Install/upgrade

Package marked for automatic removal:

  • Will be removed on: 2024-11-27
  • Dependencies leading to autoremoval: arcp
  • Bugs in dependencies leading to autoremoval: #1081857

Continuous integration (CI) tests are failing:

Piuparts failed:

  • Version: 3.9.0+dfsg-2~bpo8+1
  • Sections: jessie2bpo

augur

😟 Autoremoval

😟 CI

Package marked for automatic removal:

  • Will be removed on: 2024-12-13
  • Dependencies leading to autoremoval: indexed-gzip
  • Bugs in dependencies leading to autoremoval: #1081618

Continuous integration (CI) tests are failing:

drop-seq

😟 Autoremoval

😟 CI

Package marked for automatic removal:

  • Will be removed on: 2024-12-12
  • Dependencies leading to autoremoval: libapfloat-java
  • Bugs in dependencies leading to autoremoval: #1086280

Continuous integration (CI) tests are failing:

kallisto

😟 Autoremoval

😟 CI

Package marked for automatic removal:

  • Will be removed on: 2024-11-27
  • Dependencies leading to autoremoval: arcp
  • Bugs in dependencies leading to autoremoval: #1081857

Continuous integration (CI) tests are failing:

python-cooler

😟 Autoremoval

😟 CI

Package marked for automatic removal:

  • Will be removed on: 2024-12-09
  • Dependencies leading to autoremoval: h5py
  • Bugs in dependencies leading to autoremoval: #1080198

Continuous integration (CI) tests are failing:

python-pybedtools

😟 Autoremoval

😟 CI

Package marked for automatic removal:

Continuous integration (CI) tests are failing:

r-bioc-mutationalpatterns

😟 Autoremoval

😟 CI

Package marked for automatic removal:

  • Will be removed on: 2024-12-06
  • Dependencies leading to autoremoval: r-cran-dplyr
  • Bugs in dependencies leading to autoremoval: #1072630

Continuous integration (CI) tests are failing:

r-bioc-rgsepd

😟 Autoremoval

😟 CI

Package marked for automatic removal:

  • Will be removed on: 2024-12-06
  • Dependencies leading to autoremoval: r-cran-dplyr
  • Bugs in dependencies leading to autoremoval: #1072630

Continuous integration (CI) tests are failing:

r-cran-shazam

😟 Autoremoval

😟 CI

Package marked for automatic removal:

  • Will be removed on: 2024-12-06
  • Dependencies leading to autoremoval: r-cran-dplyr
  • Bugs in dependencies leading to autoremoval: #1072630

Continuous integration (CI) tests are failing:

r-cran-tigger

😟 Autoremoval

😟 CI

Package marked for automatic removal:

  • Will be removed on: 2024-12-06
  • Dependencies leading to autoremoval: r-cran-dplyr
  • Bugs in dependencies leading to autoremoval: #1072630

Continuous integration (CI) tests are failing:

snpeff

😟 Autoremoval

😟 CI

Package marked for automatic removal:

  • Will be removed on: 2024-12-12
  • Dependencies leading to autoremoval: libapfloat-java
  • Bugs in dependencies leading to autoremoval: #1086280

Continuous integration (CI) tests are failing:

snpsift

😟 Autoremoval

😟 CI

Package marked for automatic removal:

  • Will be removed on: 2024-12-12
  • Dependencies leading to autoremoval: libapfloat-java
  • Bugs in dependencies leading to autoremoval: #1086280

Continuous integration (CI) tests are failing:

pigx-rnaseq

😟 Autoremoval

😟 Install/upgrade

😑 Tests missing

Package marked for automatic removal:

Piuparts failed:

Continuous integration (CI) tests are missing.

cwltool

😟 Autoremoval

😟 Install/upgrade

Package marked for automatic removal:

  • Will be removed on: 2024-11-27
  • Dependencies leading to autoremoval: arcp
  • Bugs in dependencies leading to autoremoval: #1081857

Piuparts failed:

  • Version: 1.0.20170114120503-1~bpo8+1
  • Sections: jessie2bpo

poretools

😟 Autoremoval

😟 Install/upgrade

Package marked for automatic removal:

  • Will be removed on: 2024-12-09
  • Dependencies leading to autoremoval: h5py
  • Bugs in dependencies leading to autoremoval: #1080198

Piuparts failed:

r-cran-epi

😟 Autoremoval

😟 Install/upgrade

Package marked for automatic removal:

  • Will be removed on: 2024-12-06
  • Dependencies leading to autoremoval: r-cran-dplyr
  • Bugs in dependencies leading to autoremoval: #1072630

Piuparts failed:

tnseq-transit

😟 Autoremoval

😟 Install/upgrade

Package marked for automatic removal:

  • Will be removed on: 2024-12-06
  • Dependencies leading to autoremoval: r-cran-dplyr
  • Bugs in dependencies leading to autoremoval: #1072630

Piuparts failed:

macromoleculebuilder

😟 Autoremoval

😑 Tests missing

Package marked for automatic removal:

  • Will be removed on: 2024-11-28
  • Bugs leading to autoremoval: #1086362

Continuous integration (CI) tests are missing.

python-seqcluster

😟 Autoremoval

😑 Tests missing

Package marked for automatic removal:

  • Will be removed on: 2024-12-13
  • Dependencies leading to autoremoval: python-pybedtools
  • Bugs in dependencies leading to autoremoval: #1081673

Continuous integration (CI) tests are missing.

pairtools

😟 Autoremoval

Package marked for automatic removal:

picopore

😟 Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2024-12-09
  • Dependencies leading to autoremoval: h5py
  • Bugs in dependencies leading to autoremoval: #1080198

pycoqc

😟 Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2024-12-09
  • Dependencies leading to autoremoval: h5py
  • Bugs in dependencies leading to autoremoval: #1080198

python-biom-format

😟 Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2024-12-09
  • Dependencies leading to autoremoval: h5py
  • Bugs in dependencies leading to autoremoval: #1080198

python-gffutils

😟 Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2024-12-13
  • Dependencies leading to autoremoval: python-pybedtools
  • Bugs in dependencies leading to autoremoval: #1081673

python-pbcommand

😟 Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2024-12-09
  • Dependencies leading to autoremoval: h5py
  • Bugs in dependencies leading to autoremoval: #1080198

python-questplus

😟 Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2024-12-09
  • Dependencies leading to autoremoval: h5py
  • Bugs in dependencies leading to autoremoval: #1080198

r-cran-alakazam

😟 Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2024-12-06
  • Dependencies leading to autoremoval: r-cran-dplyr
  • Bugs in dependencies leading to autoremoval: #1072630

r-cran-covid19us

😟 Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2024-12-06
  • Dependencies leading to autoremoval: r-cran-dplyr
  • Bugs in dependencies leading to autoremoval: #1072630

r-cran-epiestim

😟 Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2024-12-06
  • Dependencies leading to autoremoval: r-cran-dplyr
  • Bugs in dependencies leading to autoremoval: #1072630

tombo

😟 Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2024-12-09
  • Dependencies leading to autoremoval: h5py
  • Bugs in dependencies leading to autoremoval: #1080198

drmaa

😟 CI

😟 Migration

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 82 days.
  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: depends
  • Invalidated by another package
  • Blocked by: gridengine

Piuparts failed:

gromacs

😟 CI

😟 Migration

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Has been trying to migrate for 12 days.
  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: depends
  • Invalidated by another package
  • Blocked by: openmpi

Piuparts failed:

pynn

😟 CI

😟 Migration

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 151 days.
  • Verdict: Rejected/violates migration policy/introduces a regression

Piuparts failed:

python-cogent

😟 CI

😟 Migration

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 304 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest, missingbuild
  • Migrates after: numba

Piuparts failed:

r-cran-epir

😟 CI

😟 Migration

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 139 days.
  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: build-depends, depends
  • Invalidated by another package
  • Blocked by: r-cran-sf

Piuparts failed:

r-cran-sf

😟 CI

😟 Migration

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 139 days.
  • Verdict: Rejected/violates migration policy/introduces a regression

Piuparts failed:

r-cran-sjplot

😟 CI

😟 Migration

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 139 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest
  • Migrates after: r-cran-bayestestr, r-cran-parameters, r-cran-performance, r-cran-sjstats

Piuparts failed:

vg

😟 CI

😟 Migration

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 801 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest, depends

Piuparts failed:

bcbio

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 252 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Migrates after: freebayes, hts-nim-tools, mosdepth

pplacer

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 673 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest

pychopper

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 252 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest

python-anndata

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 271 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest
  • Migrates after: python-array-api-compat

q2-cutadapt

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 79 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest
  • Migrates after: q2-types, qiime

q2-feature-table

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 79 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest
  • Migrates after: q2-types, qiime

q2-quality-filter

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 79 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest
  • Migrates after: q2-types, qiime

r-cran-kernelheaping

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 136 days.
  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: build-depends, depends
  • Invalidated by another package
  • Blocked by: r-cran-sparr

readucks

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 252 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest

sepp

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 673 days.
  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: build-depends, depends
  • Invalidated by another package
  • Blocked by: pplacer

sumaclust

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 97 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest
  • Migrates after: sumalibs

toil

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 121 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest

umap-learn

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 304 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Migrates after: numba, python-pynndescent

abyss

😟 Migration

😟 Install/upgrade

Migration from unstable to testing is blocked:

  • Has been trying to migrate for 12 days.
  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: depends
  • Invalidated by another package
  • Blocked by: openmpi

Piuparts failed:

freebayes

😟 Migration

😟 Install/upgrade

Migration from unstable to testing is blocked:

  • Not in testing for 203 days.
  • Verdict: Rejected/violates migration policy/introduces a regression

Piuparts failed:

bowtie2

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

fastani

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

fastqc

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

  • Version: 0.11.5+dfsg-6~bpo8+1
  • Sections: jessie2bpo

gnumed-client

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

htseq

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

imagej

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

muscle

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

picard-tools

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

python-biopython

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

spades

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

  • Version: 3.9.0+dfsg-1~bpo8+1
  • Sections: jessie2bpo

unicycler

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

vsearch

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

smrtanalysis

😟 Migration

😑 Tests missing

Migration from unstable to testing is blocked:

  • Not in testing for 252 days.
  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: depends
  • Invalidated by another package
  • Blocked by: blasr

Continuous integration (CI) tests are missing.

tipp

😟 Migration

😑 Tests missing

Migration from unstable to testing is blocked:

  • Not in testing for 673 days.
  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: build-depends, depends
  • Invalidated by another package
  • Blocked by: sepp

Continuous integration (CI) tests are missing.

ncbi-blast+

😟 Migration

😟 Install/upgrade

Migration from unstable to testing is blocked:

  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: depends
  • Invalidated by another package
  • Blocked by: mbedtls

Piuparts failed:

centrifuge

😟 CI

Continuous integration (CI) tests are failing:

fasta3

😟 CI

Continuous integration (CI) tests are failing:

ivar

😟 CI

Continuous integration (CI) tests are failing:

lighter

😟 CI

Continuous integration (CI) tests are failing:

mmseqs2

😟 CI

Continuous integration (CI) tests are failing:

nanosv

😟 CI

Continuous integration (CI) tests are failing:

nthash

😟 CI

Continuous integration (CI) tests are failing:

odil

😟 CI

Continuous integration (CI) tests are failing:

orthanc-python

😟 CI

Continuous integration (CI) tests are failing:

parallel-fastq-dump

😟 CI

Continuous integration (CI) tests are failing:

pinfish

😟 CI

Continuous integration (CI) tests are failing:

porechop

😟 CI

Continuous integration (CI) tests are failing:

prokka

😟 CI

Continuous integration (CI) tests are failing:

python-cgecore

😟 CI

Continuous integration (CI) tests are failing:

python-depinfo

😟 CI

Continuous integration (CI) tests are failing:

r-bioc-htsfilter

😟 CI

Continuous integration (CI) tests are failing:

r-bioc-pwmenrich

😟 CI

Continuous integration (CI) tests are failing:

r-bioc-rcpi

😟 CI

Continuous integration (CI) tests are failing:

r-bioc-tcgabiolinks

😟 CI

Continuous integration (CI) tests are failing:

r-cran-surveillance

😟 CI

Continuous integration (CI) tests are failing:

seqan3

😟 CI

Continuous integration (CI) tests are failing:

shovill

😟 CI

Continuous integration (CI) tests are failing:

spaln

😟 CI

Continuous integration (CI) tests are failing:

stringtie

😟 CI

Continuous integration (CI) tests are failing:

wtdbg2

😟 CI

Continuous integration (CI) tests are failing:

yanosim

😟 CI

Continuous integration (CI) tests are failing:

pytorch

😟 Migration

Migration from unstable to testing is blocked:

  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest
  • Migrates after: openmpi

gnumed-server

😟 Install/upgrade

😑 Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

libchipcard

😟 Install/upgrade

😑 Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

libics

😟 Install/upgrade

😑 Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

texlive-extra

😟 Install/upgrade

😑 Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

workrave

😟 Install/upgrade

😑 Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

abacas

😟 Install/upgrade

Piuparts failed:

bcftools

😟 Install/upgrade

Piuparts failed:

bedtools

😟 Install/upgrade

Piuparts failed:

bwa

😟 Install/upgrade

Piuparts failed:

dcmtk

😟 Install/upgrade

Piuparts failed:

diamond-aligner

😟 Install/upgrade

Piuparts failed:

discosnp

😟 Install/upgrade

Piuparts failed:

gdcm

😟 Install/upgrade

Piuparts failed:

genometools

😟 Install/upgrade

Piuparts failed:

gubbins

😟 Install/upgrade

Piuparts failed:

kalign

😟 Install/upgrade

Piuparts failed:

minia

😟 Install/upgrade

Piuparts failed:

minimap2

😟 Install/upgrade

Piuparts failed:

nanook

😟 Install/upgrade

Piuparts failed:

nanopolish

😟 Install/upgrade

Piuparts failed:

orthanc

😟 Install/upgrade

Piuparts failed:

orthanc-wsi

😟 Install/upgrade

Piuparts failed:

proteinortho

😟 Install/upgrade

Piuparts failed:

  • Version: 5.15+dfsg-1~bpo8+1
  • Sections: jessie2bpo

python-cutadapt

😟 Install/upgrade

Piuparts failed:

python-pauvre

😟 Install/upgrade

Piuparts failed:

python-pyfaidx

😟 Install/upgrade

Piuparts failed:

python-pysam

😟 Install/upgrade

Piuparts failed:

  • Version: 0.9.1.4+ds-1~bpo8+1
  • Sections: jessie2bpo

python-pyvcf

😟 Install/upgrade

Piuparts failed:

python-tornado

😟 Install/upgrade

Piuparts failed:

r-bioc-limma

😟 Install/upgrade

Piuparts failed:

r-cran-diagnosismed

😟 Install/upgrade

Piuparts failed:

r-cran-epibasix

😟 Install/upgrade

Piuparts failed:

r-cran-epicalc

😟 Install/upgrade

Piuparts failed:

r-cran-epitools

😟 Install/upgrade

Piuparts failed:

r-cran-hms

😟 Install/upgrade

Piuparts failed:

r-cran-stringi

😟 Install/upgrade

Piuparts failed:

rna-star

😟 Install/upgrade

Piuparts failed:

ruby-bio

😟 Install/upgrade

Piuparts failed:

samtools

😟 Install/upgrade

Piuparts failed:

staden-io-lib

😟 Install/upgrade

Piuparts failed:

tiddit

😟 Install/upgrade

Piuparts failed:

umis

😟 Install/upgrade

Piuparts failed:

dextractor

😑 Tests missing

Continuous integration (CI) tests are missing.

htscodecs

😑 Tests missing

Continuous integration (CI) tests are missing.

libmaus2

😑 Tests missing

Continuous integration (CI) tests are missing.

milib

😑 Tests missing

Continuous integration (CI) tests are missing.

node-shiny-server

😑 Tests missing

Continuous integration (CI) tests are missing.

plasmidid

😑 Tests missing

Continuous integration (CI) tests are missing.

r-other-ascat

😑 Tests missing

Continuous integration (CI) tests are missing.

thesias

😑 Tests missing

Continuous integration (CI) tests are missing.

tophat-recondition

😑 Tests missing

Continuous integration (CI) tests are missing.

varscan

😑 Tests missing

Continuous integration (CI) tests are missing.

vienna-rna

😑 Tests missing

Continuous integration (CI) tests are missing.