Help us to see Debian used by medical practitioners and biomedical researchers! Join us on the Salsa page.

Covid-19 - Quality Assurance

Summary

Autoremovals: 3

Migration issues: 32

CI failures: 66

Install issues: 81

No issues: 90/232

This task exists only for tagging COVID-19 relevant cases

The Debian Med team intends to take part at the COVID-19 Biohackathon (April 5-11, 2020) This task was created only for the purpose to list relevant packages.

kallisto

๐Ÿ˜Ÿ Autoremoval

๐Ÿ˜Ÿ CI

Package marked for automatic removal:

Continuous integration (CI) tests are failing:

pigx-rnaseq

๐Ÿ˜Ÿ Autoremoval

๐Ÿ˜Ÿ Install/upgrade

๐Ÿ˜‘ Tests missing

Package marked for automatic removal:

Piuparts failed:

Continuous integration (CI) tests are missing.

snakemake

๐Ÿ˜Ÿ Autoremoval

๐Ÿ˜Ÿ Install/upgrade

Package marked for automatic removal:

Piuparts failed:

  • Version: 3.9.0+dfsg-2~bpo8+1
  • Sections: jessie2bpo

drmaa

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 181 days.
  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: depends
  • Invalidated by another package
  • Blocked by: gridengine

Piuparts failed:

python-cogent

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 403 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest, missingbuild
  • Migrates after: numba

Piuparts failed:

  • Version: 2024.5.7a1+dfsg-3
  • Sections: sid

umap-learn

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 403 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest
  • Migrates after: numba, python-pynndescent

Piuparts failed:

vg

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 900 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest

Piuparts failed:

odil

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: depends
  • Invalidated by another package
  • Blocked by: dcmtk

Piuparts failed:

pairtools

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest, missingbuild

Piuparts failed:

pplacer

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 772 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest

pychopper

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 351 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest

python-anndata

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 370 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest
  • Migrates after: python-array-api-compat

python-pbcore

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Verdict: Rejected/violates migration policy/introduces a regression

Piuparts failed:

  • Version: 1.2.7+dfsg-2~bpo8+1
  • Sections: jessie2bpo

q2-cutadapt

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 178 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest
  • Migrates after: q2-types, qiime

q2-feature-table

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 178 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest
  • Migrates after: q2-types, qiime

q2-quality-filter

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 178 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest
  • Migrates after: q2-types, qiime

readucks

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 351 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest

sepp

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 772 days.
  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: build-depends, depends
  • Invalidated by another package
  • Blocked by: pplacer

toil

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 220 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest

unicycler

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 17 days.
  • Verdict: No excuse
  • Migrates after: pilon

Piuparts failed:

bcbio

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Verdict: Rejected/violates migration policy/introduces a regression
  • Migrates after: mosdepth, snpeff, umis

pytorch

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest
  • Migrates after: onednn, openmpi, xnnpack

seqan3

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: newerintesting

r-cran-sjplot

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Migration from unstable to testing is blocked:

  • Not in testing for 238 days.
  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: build-depends, depends
  • Invalidated by another package
  • Blocked by: r-cran-performance
  • Migrates after: r-cran-bayestestr, r-cran-parameters, r-cran-sjstats

Piuparts failed:

umis

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Migration from unstable to testing is blocked:

  • Not in testing for 48 days.
  • Verdict: Rejected/violates migration policy/introduces a regression

Piuparts failed:

bowtie2

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

fastani

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

fastqc

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

  • Version: 0.11.5+dfsg-6~bpo8+1
  • Sections: jessie2bpo

gnumed-client

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

gromacs

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

gubbins

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

htseq

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

imagej

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

muscle

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

nanook

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

picard-tools

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

pydicom

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

shovill

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 17 days.
  • Verdict: No excuse
  • Migrates after: pilon

vsearch

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

smrtanalysis

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

๐Ÿ˜‘ Tests missing

Migration from unstable to testing is blocked:

  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: build-depends, depends
  • Invalidated by another package
  • Blocked by: python-pbcore
  • Migrates after: python-pbcommand

Piuparts failed:

Continuous integration (CI) tests are missing.

tipp

๐Ÿ˜Ÿ Migration

๐Ÿ˜‘ Tests missing

Migration from unstable to testing is blocked:

  • Not in testing for 772 days.
  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: build-depends, depends
  • Invalidated by another package
  • Blocked by: sepp

Continuous integration (CI) tests are missing.

dcmtk

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Migration from unstable to testing is blocked:

  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: newerintesting

Piuparts failed:

dcmtk

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Migration from unstable to testing is blocked:

  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest, missingbuild

Piuparts failed:

orthanc

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Migration from unstable to testing is blocked:

  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: depends
  • Invalidated by another package
  • Blocked by: dcmtk

Piuparts failed:

orthanc-wsi

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Migration from unstable to testing is blocked:

  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: depends
  • Invalidated by another package
  • Blocked by: dcmtk

Piuparts failed:

pynn

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Migration from unstable to testing is blocked:

  • Verdict: Rejected/violates migration policy/introduces a regression

Piuparts failed:

augur

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

centrifuge

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

drop-seq

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

gffread

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

ivar

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

lighter

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

mmseqs2

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

nanosv

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

nthash

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

orthanc-python

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

pinfish

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

porechop

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

prokka

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

python-cgecore

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

python-cooler

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

python-pauvre

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

r-bioc-htsfilter

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

r-bioc-mutationalpatterns

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

r-bioc-pwmenrich

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

r-bioc-rcpi

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

r-bioc-rgsepd

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

r-bioc-tcgabiolinks

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

r-cran-shazam

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

r-cran-tigger

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

snpeff

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

snpsift

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

spaln

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

stringtie

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

sumaclust

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

wtdbg2

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

yanosim

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

orthanc-dicomweb

๐Ÿ˜Ÿ Migration

Migration from unstable to testing is blocked:

  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: depends
  • Invalidated by another package
  • Blocked by: dcmtk

python-pbcommand

๐Ÿ˜Ÿ Migration

Migration from unstable to testing is blocked:

  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: build-depends
  • Invalidated by another package
  • Blocked by: python-pbcore

gnumed-server

๐Ÿ˜Ÿ Install/upgrade

๐Ÿ˜‘ Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

libchipcard

๐Ÿ˜Ÿ Install/upgrade

๐Ÿ˜‘ Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

libics

๐Ÿ˜Ÿ Install/upgrade

๐Ÿ˜‘ Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

texlive-extra

๐Ÿ˜Ÿ Install/upgrade

๐Ÿ˜‘ Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

workrave

๐Ÿ˜Ÿ Install/upgrade

๐Ÿ˜‘ Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

abacas

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

abyss

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

bamkit

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

bcalm

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

bcftools

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

bedtools

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

bwa

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

cwltool

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

  • Version: 1.0.20170114120503-1~bpo8+1
  • Sections: jessie2bpo

diamond-aligner

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

discosnp

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

freebayes

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

gdcm

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

genometools

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

kalign

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

minia

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

minimap2

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

nanopolish

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

ncbi-blast+

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

poretools

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

proteinortho

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

  • Version: 5.15+dfsg-1~bpo8+1
  • Sections: jessie2bpo

python-biom-format

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

python-biopython

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

python-cutadapt

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

python-pyfaidx

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

python-pysam

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

  • Version: 0.9.1.4+ds-1~bpo8+1
  • Sections: jessie2bpo

python-pyvcf

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

python-tornado

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

r-bioc-limma

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

r-cran-diagnosismed

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

r-cran-epi

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

r-cran-epibasix

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

r-cran-epicalc

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

r-cran-epir

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

r-cran-epitools

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

r-cran-hms

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

r-cran-sf

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

r-cran-stringi

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

rna-star

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

ruby-bio

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

samtools

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

spades

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

  • Version: 3.9.0+dfsg-1~bpo8+1
  • Sections: jessie2bpo

staden-io-lib

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

tiddit

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

tnseq-transit

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

uncalled

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

dextractor

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

htscodecs

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

libmaus2

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

macromoleculebuilder

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

milib

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

node-shiny-server

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

plasmidid

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

python-seqcluster

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

r-other-ascat

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

thesias

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

tophat-recondition

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

varscan

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

vienna-rna

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.