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Next generation sequencing - Quality Assurance

Summary

Autoremovals: 1

Migration issues: 3

CI failures: 6

Install issues: 18

No issues: 3/23

Debian Med bioinformatics applications usable in Next Generation Sequencing

It aims at gettting packages which specialize in the processing or interpretation of data generated with next- (and later-) generation high-thoughput sequencing technologies.

😟 Autoremoval

😟 Migration

😟 Install/upgrade

Package marked for automatic removal:

Will be removed on: 2025-01-09
Bugs leading to autoremoval: #1067374
Will result in removal of pbsuite smrtanalysis with total popcon score of 0

Migration from unstable to testing is blocked:

Has been trying to migrate for 12 days.
Verdict: Rejected/violates migration policy/introduces a regression
Reason: autopkgtest
Migrates after: hdf5, pbseqlib

Piuparts failed:

Version: 5.3+0-1~bpo8+1
Sections: jessie2bpo

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

Migration from unstable to testing is blocked:

Not in testing for 309 days.
Verdict: Rejected/violates migration policy/introduces a regression
Reason: autopkgtest
Migrates after: python-array-api-compat

😟 CI

😟 Migration

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

Migration from unstable to testing is blocked:

Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
Reason: depends
Invalidated by another package
Blocked by: hdf5

Piuparts failed:

Version: 2.8.1-2+dfsg-2~bpo8+1
Sections: jessie2bpo

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

Piuparts failed:

Version: 1.1.2-6
Sections: jessie2Xstretch jessie2Xstretch-rcmd jessie-lts2stretch

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

Piuparts failed:

Version: 1.0+20160927-1~bpo8+1
Sections: jessie2bpo

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

Piuparts failed:

Version: 3.1.1+dfsg-1
Sections: sid-broken-symlinks

😟 CI

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest-pkg-r

😟 Install/upgrade

😑 Tests missing

Piuparts failed:

Version: 2.1.3+dfsg-1~bpo9+1
Sections: stretch2bpo

Continuous integration (CI) tests are missing.

😟 Install/upgrade

Piuparts failed:

Version: 1.8-1~bpo9+1
Sections: stretch2bpo

😟 Install/upgrade

Piuparts failed:

Version: 2.26.0+dfsg-3
Sections: jessie2stretch-rcmd jessie2Xstretch-rcmd

😟 Install/upgrade

Piuparts failed:

Version: 0.7.17-1~bpo9+1
Sections: stretch2bpo

😟 Install/upgrade

Piuparts failed:

Version: 1.7-2~bpo9+1
Sections: stretch2bpo

😟 Install/upgrade

Piuparts failed:

Version: 830-1~bpo8+1
Sections: jessie2bpo

😟 Install/upgrade

Piuparts failed:

Version: 1.0.0~rc1+dfsg1-6~bpo9+1
Sections: stretch2bpo

😟 Install/upgrade

Piuparts failed:

Version: 0.7.1-7
Sections: jessie-lts2stretch jessie2Xstretch-rcmd jessie2stretch jessie2Xstretch

r-bioc-hilbertvis

😟 Install/upgrade

Piuparts failed:

Version: 1.32.0-1
Sections: jessie2stretch-rcmd jessie2Xstretch-rcmd

😟 Install/upgrade

Piuparts failed:

Version: 2.7.0a+dfsg-1~bpo9+1
Sections: stretch2bpo

😟 Install/upgrade

Piuparts failed:

Version: 1.7-2~bpo9+1
Sections: stretch2bpo

😟 Install/upgrade

Piuparts failed:

Version: 3.8.4-1
Sections: jessie2Xstretch-rcmd jessie2Xstretch

😟 Install/upgrade

Piuparts failed:

Version: 1.2.10+dfsg1-3
Sections: jessie2Xstretch-rcmd jessie-lts2stretch jessie2stretch jessie2stretch-rcmd jessie2Xstretch