Summary

Autoremovals: 1

Migration issues: 1

CI failures: 6

Install issues: 18

No issues: 4/23

Debian Med bioinformatics applications usable in Next Generation Sequencing

It aims at gettting packages which specialize in the processing or interpretation of data generated with next- (and later-) generation high-thoughput sequencing technologies.

libvcflib

😟 Autoremoval

😟 Install/upgrade

Package marked for automatic removal:

Will be removed on: 2025-05-24
Dependencies leading to autoremoval: r-cran-fansi
Bugs in dependencies leading to autoremoval: #1102590

Piuparts failed:

Version: 1.0.12+dfsg-1
Sections: oldstable222sid

python-anndata

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

Migration from unstable to testing is blocked:

Not in testing for 432 days.
Verdict: Rejected/violates migration policy/introduces a regression
Reason: autopkgtest, block

bowtie

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

Piuparts failed:

Version: 1.1.2-6
Sections: jessie2Xstretch jessie2Xstretch-rcmd jessie-lts2stretch

daligner

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

Piuparts failed:

Version: 1.0+20160927-1~bpo8+1
Sections: jessie2bpo

picard-tools

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

Piuparts failed:

Version: 2.8.1+dfsg-1
Sections: jessie2bpo2stretch jessie-lts2stretch jessie2Xstretch jessie2Xstretch-rcmd jessie2stretch jessie2stretch-rcmd

r-bioc-hilbertvis

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest-pkg-r

Piuparts failed:

Version: 1.32.0-1
Sections: jessie2stretch-rcmd jessie2Xstretch-rcmd

sra-sdk

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

Piuparts failed:

Version: 2.8.1-2+dfsg-2~bpo8+1
Sections: jessie2bpo

mhap

😟 Install/upgrade

😑 Tests missing

Piuparts failed:

Version: 2.1.3+dfsg-1~bpo9+1
Sections: stretch2bpo

Continuous integration (CI) tests are missing.

bcftools

😟 Install/upgrade

Piuparts failed:

Version: 1.8-1~bpo9+1
Sections: stretch2bpo

bedtools

😟 Install/upgrade

Piuparts failed:

Version: 2.26.0+dfsg-3
Sections: jessie2Xstretch-rcmd jessie2stretch-rcmd

blasr

😟 Install/upgrade

Piuparts failed:

Version: 5.3+0-1~bpo8+1
Sections: jessie2bpo

bwa

😟 Install/upgrade

Piuparts failed:

Version: 0.7.17-1~bpo9+1
Sections: stretch2bpo

htslib

😟 Install/upgrade

Piuparts failed:

Version: 1.7-2~bpo9+1
Sections: stretch2bpo

last-align

😟 Install/upgrade

Piuparts failed:

Version: 830-1~bpo8+1
Sections: jessie2bpo

maq

😟 Install/upgrade

Piuparts failed:

Version: 0.7.1-7
Sections: jessie-lts2stretch jessie2Xstretch-rcmd jessie2Xstretch jessie2stretch

rna-star

😟 Install/upgrade

Piuparts failed:

Version: 2.7.11b+dfsg-2
Sections: oldstable222sid

samtools

😟 Install/upgrade

Piuparts failed:

Version: 1.7-2~bpo9+1
Sections: stretch2bpo

ssake

😟 Install/upgrade

Piuparts failed:

Version: 3.8.4-1
Sections: jessie2Xstretch-rcmd jessie2Xstretch

velvet

😟 Install/upgrade

Piuparts failed:

Version: 1.2.10+dfsg1-3
Sections: jessie-lts2stretch jessie2Xstretch-rcmd jessie2Xstretch jessie2stretch-rcmd jessie2stretch