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Phylogeny - Quality Assurance

Summary

Autoremovals: 3

Migration issues: 2

CI failures: 4

Install issues: 31

No issues: 6/41

Debian Med phylogeny packages

This lists Debian packages related to phylogeny for use in life sciences. The purpose of this compilation of packages is to have a handy subset of from the med-bio metapackage which contains a lot more than only phylogeny related software.

tree-puzzle

๐Ÿ˜Ÿ Autoremoval

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Package marked for automatic removal:

  • Will be removed on: 2024-12-11
  • Bugs leading to autoremoval: #1086203
  • Will result in removal of arb with total popcon score of 0

Migration from unstable to testing is blocked:

  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: depends
  • Invalidated by another package
  • Blocked by: openmpi

Piuparts failed:

beast-mcmc

๐Ÿ˜Ÿ Autoremoval

๐Ÿ˜Ÿ Install/upgrade

๐Ÿ˜‘ Tests missing

Package marked for automatic removal:

  • Will be removed on: 2024-12-13
  • Dependencies leading to autoremoval: pocl
  • Bugs in dependencies leading to autoremoval: #1086460

Piuparts failed:

  • Version: 1.8.4+dfsg.1-1~bpo8+1
  • Sections: jessie2bpo

Continuous integration (CI) tests are missing.

mrbayes

๐Ÿ˜Ÿ Autoremoval

๐Ÿ˜Ÿ Install/upgrade

Package marked for automatic removal:

  • Will be removed on: 2024-12-13
  • Dependencies leading to autoremoval: pocl
  • Bugs in dependencies leading to autoremoval: #1086460

Piuparts failed:

pplacer

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 673 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest

hmmer

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

muscle

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

proda

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

proalign

๐Ÿ˜Ÿ Install/upgrade

๐Ÿ˜‘ Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

altree

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

clustalw

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

clustalx

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

dialign

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

dialign-t

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

exonerate

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

fastdnaml

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

fasttree

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

figtree

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

  • Version: 1.4.2+dfsg-2~bpo8+1
  • Sections: jessie2bpo

iqtree

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

  • Version: 1.5.3+dfsg-2~bpo8+1
  • Sections: jessie2bpo

kalign

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

mustang

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

njplot

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

phylip

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

phyml

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

  • Version: 3:3.2.0+dfsg-7~bpo8+1
  • Sections: jessie2bpo

poa

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

populations

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

probalign

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

probcons

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

seaview

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

  • Version: 1:4.6.1.2-2~bpo8+1
  • Sections: jessie2bpo

sigma-align

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

t-coffee

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

tm-align

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

treeviewx

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

jmodeltest

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

spread-phy

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

treeview

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.