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Cloud - Quality Assurance

Summary

Autoremovals: 12

Migration issues: 6

CI failures: 24

Install issues: 10

No issues: 89/140

Debian Med bioinformatics applications usable in cloud computing

This metapackage will install Debian packages related to molecular biology, structural biology and bioinformatics for use in life sciences, that do not depend on graphical toolkits and therefore can fit on system images for use in cloud computing clusters, where space can be limited.

freecontact

😟 Autoremoval

😟 CI

😟 Install/upgrade

Package marked for automatic removal:

Continuous integration (CI) tests are failing:

Piuparts failed:

biomaj3-cli

😟 Autoremoval

😟 CI

Package marked for automatic removal:

  • Will be removed on: 2025-10-24
  • Dependencies leading to autoremoval: python-elasticsearch
  • Bugs in dependencies leading to autoremoval: #1110798

Continuous integration (CI) tests are failing:

cufflinks

😟 Autoremoval

😑 Tests missing

Package marked for automatic removal:

  • Will be removed on: 2025-10-04
  • Bugs leading to autoremoval: #1114084

Continuous integration (CI) tests are missing.

abyss

😟 Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2025-10-04
  • Dependencies leading to autoremoval: libsdsl
  • Bugs in dependencies leading to autoremoval: #1097267

bioperl-run

😟 Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2025-10-04
  • Dependencies leading to autoremoval: primer3 sim4
  • Bugs in dependencies leading to autoremoval: #1097649 #1097885

disulfinder

😟 Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2025-10-04
  • Bugs leading to autoremoval: #1114089

genometools

😟 Autoremoval

Package marked for automatic removal:

mrbayes

😟 Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2025-10-05
  • Dependencies leading to autoremoval: pocl
  • Bugs in dependencies leading to autoremoval: #1097627

primer3

😟 Autoremoval

Package marked for automatic removal:

readseq

😟 Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2025-10-24
  • Bugs leading to autoremoval: #1097779
  • Will result in removal of arb with total popcon score of 0

sim4

😟 Autoremoval

Package marked for automatic removal:

smalt

😟 Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2025-10-04
  • Dependencies leading to autoremoval: bambamc
  • Bugs in dependencies leading to autoremoval: #1096356

python-cogent

😟 CI

😟 Migration

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 619 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest, depends

Piuparts failed:

qiime

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 394 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest

gromacs

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

sra-sdk

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

acedb

😟 Migration

😑 Tests missing

Migration from unstable to testing is blocked:

  • Not in testing for 368 days.
  • Verdict: Rejected/violates migration policy/introduces a regression

Continuous integration (CI) tests are missing.

bowtie

😟 CI

Continuous integration (CI) tests are failing:

bowtie2

😟 CI

Continuous integration (CI) tests are failing:

fastqc

😟 CI

Continuous integration (CI) tests are failing:

gasic

😟 CI

Continuous integration (CI) tests are failing:

hmmer

😟 CI

Continuous integration (CI) tests are failing:

infernal

😟 CI

Continuous integration (CI) tests are failing:

jellyfish

😟 CI

Continuous integration (CI) tests are failing:

mapsembler2

😟 CI

Continuous integration (CI) tests are failing:

mummer

😟 CI

Continuous integration (CI) tests are failing:

muscle

😟 CI

Continuous integration (CI) tests are failing:

parsinsert

😟 CI

Continuous integration (CI) tests are failing:

perm

😟 CI

Continuous integration (CI) tests are failing:

picard-tools

😟 CI

Continuous integration (CI) tests are failing:

probabel

😟 CI

Continuous integration (CI) tests are failing:

proda

😟 CI

Continuous integration (CI) tests are failing:

seqan2

😟 CI

Continuous integration (CI) tests are failing:

sigma-align

😟 CI

Continuous integration (CI) tests are failing:

theseus

😟 CI

Continuous integration (CI) tests are failing:

raster3d

😟 Migration

Migration from unstable to testing is blocked:

  • Verdict: Maybe temporary, maybe blocked but Britney is missing information
  • Reason: autopkgtest, missingbuild

soapdenovo

😟 Migration

Migration from unstable to testing is blocked:

  • Verdict: Rejected/violates migration policy/introduces a regression

soapdenovo2

😟 Migration

Migration from unstable to testing is blocked:

  • Verdict: Rejected/violates migration policy/introduces a regression

bioperl

😟 Install/upgrade

Piuparts failed:

mafft

😟 Install/upgrade

Piuparts failed:

minia

😟 Install/upgrade

Piuparts failed:

pdb2pqr

😟 Install/upgrade

Piuparts failed:

prime-phylo

😟 Install/upgrade

Piuparts failed:

wise

😟 Install/upgrade

Piuparts failed:

embassy-domainatrix

😑 Tests missing

Continuous integration (CI) tests are missing.

embassy-domalign

😑 Tests missing

Continuous integration (CI) tests are missing.

embassy-domsearch

😑 Tests missing

Continuous integration (CI) tests are missing.

melting

😑 Tests missing

Continuous integration (CI) tests are missing.

phyutility

😑 Tests missing

Continuous integration (CI) tests are missing.

rtax

😑 Tests missing

Continuous integration (CI) tests are missing.

sibsim4

😑 Tests missing

Continuous integration (CI) tests are missing.