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Cloud - Quality Assurance

Summary

Autoremovals: 4

Migration issues: 12

CI failures: 28

Install issues: 119

No issues: 16/141

Debian Med bioinformatics applications usable in cloud computing

This metapackage will install Debian packages related to molecular biology, structural biology and bioinformatics for use in life sciences, that do not depend on graphical toolkits and therefore can fit on system images for use in cloud computing clusters, where space can be limited.

prime-phylo

๐Ÿ˜Ÿ Autoremoval

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

Package marked for automatic removal:

  • Will be removed on: 2024-11-28
  • Bugs leading to autoremoval: #1086370

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Verdict: Maybe temporary, maybe blocked but Britney is missing information
  • Reason: autopkgtest, missingbuild
  • Migrates after: openmpi

tree-puzzle

๐Ÿ˜Ÿ Autoremoval

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Package marked for automatic removal:

  • Will be removed on: 2024-12-11
  • Bugs leading to autoremoval: #1086203
  • Will result in removal of arb with total popcon score of 0

Migration from unstable to testing is blocked:

  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: depends
  • Invalidated by another package
  • Blocked by: openmpi

Piuparts failed:

biomaj3-cli

๐Ÿ˜Ÿ Autoremoval

๐Ÿ˜Ÿ CI

Package marked for automatic removal:

Continuous integration (CI) tests are failing:

mrbayes

๐Ÿ˜Ÿ Autoremoval

๐Ÿ˜Ÿ Install/upgrade

Package marked for automatic removal:

  • Will be removed on: 2024-12-13
  • Dependencies leading to autoremoval: pocl
  • Bugs in dependencies leading to autoremoval: #1086460

Piuparts failed:

bioperl-run

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 45 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest

Piuparts failed:

gromacs

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Has been trying to migrate for 12 days.
  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: depends
  • Invalidated by another package
  • Blocked by: openmpi

Piuparts failed:

python-cogent

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 304 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest, missingbuild
  • Migrates after: numba

Piuparts failed:

qiime

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 79 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest

Piuparts failed:

sra-sdk

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Has been trying to migrate for 27 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest, missingbuild
  • Migrates after: ncbi-vdb

Piuparts failed:

  • Version: 2.8.1-2+dfsg-2~bpo8+1
  • Sections: jessie2bpo

acedb

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

๐Ÿ˜‘ Tests missing

Migration from unstable to testing is blocked:

  • Not in testing for 53 days.
  • Verdict: Rejected/violates migration policy/introduces a regression

Piuparts failed:

Continuous integration (CI) tests are missing.

anfo

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

๐Ÿ˜‘ Tests missing

Migration from unstable to testing is blocked:

  • Not in testing for 818 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest, depends

Piuparts failed:

Continuous integration (CI) tests are missing.

abyss

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Migration from unstable to testing is blocked:

  • Has been trying to migrate for 12 days.
  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: depends
  • Invalidated by another package
  • Blocked by: openmpi

Piuparts failed:

ampliconnoise

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Migration from unstable to testing is blocked:

  • Not in testing for 202 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest

Piuparts failed:

mlv-smile

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Migration from unstable to testing is blocked:

  • Not in testing for 40 days.
  • Verdict: Rejected/violates migration policy/introduces a regression

Piuparts failed:

bioperl

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

bowtie

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

bowtie2

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

emboss

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

fastqc

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

  • Version: 0.11.5+dfsg-6~bpo8+1
  • Sections: jessie2bpo

gasic

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

hmmer

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

infernal

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

jellyfish

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

loki

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

mummer

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

muscle

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

ncbi-tools6

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

parsinsert

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

picard-tools

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

probabel

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

proda

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

python-biopython

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

seqan2

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

  • Version: 2.4.0+dfsg-8~bpo8+1
  • Sections: jessie2bpo

theseus

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

perm

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

embassy-domainatrix

๐Ÿ˜Ÿ Install/upgrade

๐Ÿ˜‘ Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

melting

๐Ÿ˜Ÿ Install/upgrade

๐Ÿ˜‘ Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

phyutility

๐Ÿ˜Ÿ Install/upgrade

๐Ÿ˜‘ Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

rtax

๐Ÿ˜Ÿ Install/upgrade

๐Ÿ˜‘ Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

sibsim4

๐Ÿ˜Ÿ Install/upgrade

๐Ÿ˜‘ Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

aevol

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

altree

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

amap-align

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

aragorn

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

autodocksuite

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

autodock-vina

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

bamtools

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

bedtools

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

biosquid

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

boxshade

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

bwa

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

cassiopee

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

cdbfasta

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

circos

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

clearcut

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

clonalframe

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

clustalo

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

clustalw

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

coils

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

concavity

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

conservation-code

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

datamash

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

dialign

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

dialign-t

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

discosnp

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

disulfinder

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

dnaclust

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

dssp

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

epcr

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

exonerate

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

fastdnaml

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

fastlink

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

fasttree

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

fitgcp

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

flexbar

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

freecontact

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

genometools

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

gff2aplot

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

gff2ps

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

glam2

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

hhsuite

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

htslib

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

idba

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

kalign

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

kissplice

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

last-align

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

macs

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

mafft

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

mapsembler2

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

maq

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

minia

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

mira

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

mothur

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

mustang

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

neobio

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

paraclu

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

pdb2pqr

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

phyml

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

  • Version: 3:3.2.0+dfsg-7~bpo8+1
  • Sections: jessie2bpo

plink

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

poa

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

prank

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

primer3

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

probcons

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

prodigal

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

raster3d

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

r-bioc-hilbertvis

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

readseq

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

rnahybrid

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

r-other-mott-happy

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

samtools

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

sigma-align

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

sim4

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

smalt

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

snap

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

soapdenovo

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

soapdenovo2

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

ssake

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

staden-io-lib

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

t-coffee

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

tigr-glimmer

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

velvet

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

wise

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

cufflinks

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

embassy-domalign

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

embassy-domsearch

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.