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Cloud - Quality Assurance

Summary

Autoremovals: 6

Migration issues: 14

CI failures: 28

Install issues: 122

No issues: 15/144

Debian Med bioinformatics applications usable in cloud computing

This metapackage will install Debian packages related to molecular biology, structural biology and bioinformatics for use in life sciences, that do not depend on graphical toolkits and therefore can fit on system images for use in cloud computing clusters, where space can be limited.

gromacs

๐Ÿ˜Ÿ Autoremoval

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Package marked for automatic removal:

  • Will be removed on: 2024-06-03
  • Dependencies leading to autoremoval: plantuml
  • Bugs in dependencies leading to autoremoval: #1069353

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: depends
  • Invalidated by another package
  • Blocked by: openmpi

Piuparts failed:

bioperl-run

๐Ÿ˜Ÿ Autoremoval

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Package marked for automatic removal:

  • Will be removed on: 2024-06-02
  • Dependencies leading to autoremoval: python-pybedtools
  • Bugs in dependencies leading to autoremoval: #1068960

Continuous integration (CI) tests are failing:

Piuparts failed:

gasic

๐Ÿ˜Ÿ Autoremoval

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Package marked for automatic removal:

  • Will be removed on: 2024-06-02
  • Dependencies leading to autoremoval: python-pybedtools
  • Bugs in dependencies leading to autoremoval: #1068960

Continuous integration (CI) tests are failing:

Piuparts failed:

fitgcp

๐Ÿ˜Ÿ Autoremoval

๐Ÿ˜Ÿ Install/upgrade

Package marked for automatic removal:

  • Will be removed on: 2024-06-02
  • Dependencies leading to autoremoval: python-pybedtools
  • Bugs in dependencies leading to autoremoval: #1068960

Piuparts failed:

parsinsert

๐Ÿ˜Ÿ Autoremoval

๐Ÿ˜Ÿ Install/upgrade

Package marked for automatic removal:

  • Will be removed on: 2024-05-19
  • Bugs leading to autoremoval: #1069488

Piuparts failed:

arden

๐Ÿ˜Ÿ Autoremoval

๐Ÿ˜‘ Tests missing

Package marked for automatic removal:

  • Will be removed on: 2024-06-02
  • Dependencies leading to autoremoval: python-pybedtools
  • Bugs in dependencies leading to autoremoval: #1068960

Continuous integration (CI) tests are missing.

ampliconnoise

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 9 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest
  • Migrates after: openmpi

Piuparts failed:

python-cogent

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 111 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest
  • Migrates after: numba

Piuparts failed:

phyml

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: depends
  • Invalidated by another package
  • Blocked by: openmpi

Piuparts failed:

  • Version: 3:3.2.0+dfsg-7~bpo8+1
  • Sections: jessie2bpo

sra-sdk

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: depends
  • Invalidated by another package
  • Blocked by: hdf5

Piuparts failed:

acedb

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

๐Ÿ˜‘ Tests missing

Migration from unstable to testing is blocked:

  • Not in testing for 23 days.
  • Verdict: Rejected/violates migration policy/introduces a regression

Piuparts failed:

Continuous integration (CI) tests are missing.

anfo

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

๐Ÿ˜‘ Tests missing

Migration from unstable to testing is blocked:

  • Not in testing for 625 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest, depends

Piuparts failed:

Continuous integration (CI) tests are missing.

freecontact

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Migration from unstable to testing is blocked:

  • Has been trying to migrate for 66 days.
  • Verdict: Rejected/violates migration policy/introduces a regression

Piuparts failed:

mlv-smile

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Migration from unstable to testing is blocked:

  • Not in testing for 22 days.
  • Verdict: Rejected/violates migration policy/introduces a regression

Piuparts failed:

bioperl

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

bowtie

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

bowtie2

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

emboss

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

fastqc

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

  • Version: 0.11.5+dfsg-6~bpo8+1
  • Sections: jessie2bpo

hmmer

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

infernal

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

jellyfish

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

mrbayes

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

mummer

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

muscle

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

phyml

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

  • Version: 3:3.2.0+dfsg-7~bpo8+1
  • Sections: jessie2bpo

picard-tools

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

probabel

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

proda

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

python-biopython

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

qiime

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

seqan2

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

  • Version: 2.4.0+dfsg-8~bpo8+1
  • Sections: jessie2bpo

theseus

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

abyss

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Migration from unstable to testing is blocked:

  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: depends
  • Invalidated by another package
  • Blocked by: openmpi

Piuparts failed:

discosnp

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Migration from unstable to testing is blocked:

  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: depends
  • Invalidated by another package
  • Blocked by: hdf5

Piuparts failed:

minia

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Migration from unstable to testing is blocked:

  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: depends
  • Invalidated by another package
  • Blocked by: hdf5

Piuparts failed:

prime-phylo

๐Ÿ˜Ÿ Migration

Migration from unstable to testing is blocked:

  • Not in testing for 4 days.
  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: depends
  • Invalidated by another package
  • Blocked by: openmpi

tree-puzzle

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Migration from unstable to testing is blocked:

  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: depends
  • Invalidated by another package
  • Blocked by: openmpi

Piuparts failed:

biomaj3-cli

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

mipe

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

embassy-domainatrix

๐Ÿ˜Ÿ Install/upgrade

๐Ÿ˜‘ Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

melting

๐Ÿ˜Ÿ Install/upgrade

๐Ÿ˜‘ Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

phyutility

๐Ÿ˜Ÿ Install/upgrade

๐Ÿ˜‘ Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

rtax

๐Ÿ˜Ÿ Install/upgrade

๐Ÿ˜‘ Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

sibsim4

๐Ÿ˜Ÿ Install/upgrade

๐Ÿ˜‘ Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

aevol

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

altree

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

amap-align

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

aragorn

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

autodocksuite

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

autodock-vina

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

bamtools

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

bedtools

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

biosquid

๐Ÿ˜Ÿ Install/upgrade

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boxshade

๐Ÿ˜Ÿ Install/upgrade

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bwa

๐Ÿ˜Ÿ Install/upgrade

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cassiopee

๐Ÿ˜Ÿ Install/upgrade

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cdbfasta

๐Ÿ˜Ÿ Install/upgrade

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circos

๐Ÿ˜Ÿ Install/upgrade

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clearcut

๐Ÿ˜Ÿ Install/upgrade

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clonalframe

๐Ÿ˜Ÿ Install/upgrade

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clustalo

๐Ÿ˜Ÿ Install/upgrade

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clustalw

๐Ÿ˜Ÿ Install/upgrade

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coils

๐Ÿ˜Ÿ Install/upgrade

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concavity

๐Ÿ˜Ÿ Install/upgrade

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conservation-code

๐Ÿ˜Ÿ Install/upgrade

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datamash

๐Ÿ˜Ÿ Install/upgrade

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dialign

๐Ÿ˜Ÿ Install/upgrade

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dialign-t

๐Ÿ˜Ÿ Install/upgrade

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disulfinder

๐Ÿ˜Ÿ Install/upgrade

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dnaclust

๐Ÿ˜Ÿ Install/upgrade

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dssp

๐Ÿ˜Ÿ Install/upgrade

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epcr

๐Ÿ˜Ÿ Install/upgrade

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exonerate

๐Ÿ˜Ÿ Install/upgrade

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fastdnaml

๐Ÿ˜Ÿ Install/upgrade

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fastlink

๐Ÿ˜Ÿ Install/upgrade

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fasttree

๐Ÿ˜Ÿ Install/upgrade

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flexbar

๐Ÿ˜Ÿ Install/upgrade

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genometools

๐Ÿ˜Ÿ Install/upgrade

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gff2aplot

๐Ÿ˜Ÿ Install/upgrade

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gff2ps

๐Ÿ˜Ÿ Install/upgrade

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glam2

๐Ÿ˜Ÿ Install/upgrade

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hhsuite

๐Ÿ˜Ÿ Install/upgrade

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htslib

๐Ÿ˜Ÿ Install/upgrade

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idba

๐Ÿ˜Ÿ Install/upgrade

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kalign

๐Ÿ˜Ÿ Install/upgrade

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kissplice

๐Ÿ˜Ÿ Install/upgrade

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last-align

๐Ÿ˜Ÿ Install/upgrade

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loki

๐Ÿ˜Ÿ Install/upgrade

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macs

๐Ÿ˜Ÿ Install/upgrade

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mafft

๐Ÿ˜Ÿ Install/upgrade

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mapsembler2

๐Ÿ˜Ÿ Install/upgrade

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maq

๐Ÿ˜Ÿ Install/upgrade

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mira

๐Ÿ˜Ÿ Install/upgrade

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mothur

๐Ÿ˜Ÿ Install/upgrade

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mustang

๐Ÿ˜Ÿ Install/upgrade

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ncbi-tools6

๐Ÿ˜Ÿ Install/upgrade

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neobio

๐Ÿ˜Ÿ Install/upgrade

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paraclu

๐Ÿ˜Ÿ Install/upgrade

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pdb2pqr

๐Ÿ˜Ÿ Install/upgrade

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plink

๐Ÿ˜Ÿ Install/upgrade

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poa

๐Ÿ˜Ÿ Install/upgrade

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prank

๐Ÿ˜Ÿ Install/upgrade

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primer3

๐Ÿ˜Ÿ Install/upgrade

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probcons

๐Ÿ˜Ÿ Install/upgrade

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prodigal

๐Ÿ˜Ÿ Install/upgrade

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raster3d

๐Ÿ˜Ÿ Install/upgrade

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r-bioc-hilbertvis

๐Ÿ˜Ÿ Install/upgrade

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readseq

๐Ÿ˜Ÿ Install/upgrade

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rnahybrid

๐Ÿ˜Ÿ Install/upgrade

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r-other-mott-happy

๐Ÿ˜Ÿ Install/upgrade

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samtools

๐Ÿ˜Ÿ Install/upgrade

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sigma-align

๐Ÿ˜Ÿ Install/upgrade

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sim4

๐Ÿ˜Ÿ Install/upgrade

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smalt

๐Ÿ˜Ÿ Install/upgrade

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snap

๐Ÿ˜Ÿ Install/upgrade

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soapdenovo

๐Ÿ˜Ÿ Install/upgrade

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soapdenovo2

๐Ÿ˜Ÿ Install/upgrade

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squizz

๐Ÿ˜Ÿ Install/upgrade

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ssake

๐Ÿ˜Ÿ Install/upgrade

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staden-io-lib

๐Ÿ˜Ÿ Install/upgrade

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t-coffee

๐Ÿ˜Ÿ Install/upgrade

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tigr-glimmer

๐Ÿ˜Ÿ Install/upgrade

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tree-puzzle

๐Ÿ˜Ÿ Install/upgrade

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velvet

๐Ÿ˜Ÿ Install/upgrade

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wise

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

cufflinks

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

embassy-domalign

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

embassy-domsearch

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.