Summary
Bugs of task
covid-19
Total bugs:
203
Open bugs:
174
Fixed bugs:
29
Links to other tasks
Legend
| Severity | Dependent | Suggested |
|---|
| critical |
0 |
0 |
| grave |
0 |
0 |
| serious |
16 |
1 |
| important |
26 |
1 |
| normal |
87 |
2 |
| minor |
23 |
0 |
| wishlist |
18 |
0 |
|
Summary bugs page of task Covid-19
Immediately looking into bugs of the dependencies of this task is advised (1743)*
Open bugs in dependent packages
16 serious, 26 important, 87 normal, 23 minor, 18 wishlist
|
|
| 920282 |
abyss fails to build on hurd - googletest EXPECT_DEATH |
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|
|
| 1049876 |
bbhash: FTBFS on 32 bit architectures |
ftbfs, sid, trixie |
|
|
| 1085372 |
busco: Python SyntaxWarning |
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|
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| 1085416 |
changeo: Python SyntaxWarning |
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|
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| 1083349 |
cwltool: (build-)depends on deprecated module python3-pkg-resources |
sid, trixie |
|
|
| 935879 |
Update to use CharLS 2.0 |
upstream |
| 1055872 |
CP-2275: "NaN", "+Infinity" and "-Infinity" |
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| 1055873 |
dcm2json is missing --convert-un for CP-1066 EVRLE |
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| 1056048 |
Memory leak in dcm2json |
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| 1060677 |
Rounding error in OFStandard::atof |
confirmed, fixed-upstream, upstream |
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|
| 1085542 |
discosnp: Python SyntaxWarning |
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|
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| 1067271 |
freebayes: FTBFS: dh_auto_test: error: cd build && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 MESON_TESTTHREADS=8 meson test -v --timeout-multiplier 100 returned exit code 5 |
fixed-upstream, ftbfs |
|
|
| 731435 |
warning: iteration 55823u invokes undefined behavior [-Waggressive-loop-optimizations] |
upstream |
| 749783 |
gdcm: Conflicting declarations of jpeg_memory_mgr may lead to invalid function calls |
|
| 826048 |
Faulty CMake file impairs compiling against GDCM |
moreinfo, wontfix |
| 1086435 |
libgdcm-tools: gdcmscu fails with "ProtocolStream as nullptr is invalid" |
upstream |
|
|
| 644397 |
Provide runtime detection for CPU SIMD capabilities |
upstream |
| 983942 |
gromacs: ftbfs with -march=x86-64-v3 |
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|
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| 1085638 |
htseq: Python SyntaxWarning |
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|
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| 1047324 |
kallisto: Fails to build source after successful build |
ftbfs, sid, trixie |
| 1057131 |
kallisto: add support for loongarch64 in d/control |
patch, pending |
|
|
| 1006686 |
libchipcard-dev: undefined variable in libchipcard-client.pc |
fixed-upstream, patch, upstream |
| 1006687 |
libchipcard6: card.c leaks memory |
patch, upstream |
|
|
| 934619 |
libmaus2 FTBFS (mostly 32bit): error: no matching function for call |
fixed-upstream, ftbfs, help, upstream |
| 1069691 |
libmaus2: FTBFS on arm64: what(): AutoArray<unsigned long,alloc_type_memalign_cacheline> failed to allocate 1398102 elements (11184816 bytes) |
confirmed, ftbfs, upstream |
|
|
| 1047978 |
lumpy-sv: Fails to build source after successful build |
ftbfs, sid, trixie |
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| 1086362 |
macromoleculebuilder: FTBFS: /usr/bin/ld: libMMB.so.4.0: undefined reference to `gzerror' |
ftbfs |
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| 1045898 |
nanook: Fails to build source after successful build |
ftbfs, sid, trixie |
|
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| 1085733 |
nanosv: Python SyntaxWarning |
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|
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| 956850 |
ncbi-blast+: Please provide /usr/bin/legacy_blast.pl |
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| 984871 |
ncbi-blast+: Missing headers for shared libraries |
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| 1010110 |
ncbi-blast+: terminate called after throwing an instance of 'ncbi::CIO_Exception' |
wontfix |
| 1077777 |
ncbi-blast+: makeblastdb yields broken DBs on s390x (BE generally?) |
upstream |
| 1080479 |
ncbi-blast+: failure to create blastdb v5 on riscv64 |
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|
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| 1087552 |
nthash: FTBFS on arm64: undefined reference to `omp_get_num_threads' |
ftbfs, sid, trixie |
|
|
| 1001387 |
Wishlist: Package Stone of Orthanc Webviewer |
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|
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| 1048822 |
plink2: Fails to build source after successful build |
ftbfs, sid, trixie |
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|
| 1085786 |
porechop: Python SyntaxWarning |
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|
|
| 1074546 |
FTBFS with OCaml 5.2.0 (Uses C functions without caml_ prefix) |
ftbfs |
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|
| 1085789 |
presto: Python SyntaxWarning |
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|
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| 1082368 |
FTBFS: TestIntegration.testIntegration: AssertionError: 1 != 0 |
confirmed, ftbfs |
|
|
| 1018448 |
pynn: build-depends on python3-nose or uses it for autopkgtest |
fixed-upstream, sid, trixie |
| 1071337 |
pynn: FTBFS: ERROR: unittests.test_recording.test_get |
ftbfs |
|
|
| 1058479 |
python-cogent: please (temporarily) drop python3-numba dependencies |
wontfix |
|
|
| 1083626 |
python-depinfo: (build-)depends on deprecated module python3-pkg-resources |
sid, trixie |
|
|
| 1087457 |
python3-pysam: autopkgtest regression with htslib 1.21 |
fixed-upstream, upstream |
|
|
| 1079359 |
SyntaxWarning: invalid escape sequence '\[' |
newcomer, upstream |
| 1083698 |
python-pyvcf: (build-)depends on deprecated module python3-pkg-resources |
sid, trixie |
|
|
| 1079788 |
python-questplus: test_thurstone_scaling fails on arm64 with scipy 1.14 |
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|
|
| 1046218 |
python-streamz: Fails to build source after successful build |
ftbfs, sid, trixie |
| 1083714 |
python-streamz: (build-)depends on deprecated module python3-pkg-resources |
sid, trixie |
|
|
| 983517 |
pytorch: Build documentation |
|
| 1057644 |
pytorch: build for all supported Python versions |
wontfix |
| 1083727 |
pytorch: (build-)depends on deprecated module python3-pkg-resources |
sid, trixie |
| 1083729 |
pytorch: (build-)depends on deprecated module python3-pkg-resources |
sid, trixie |
| 1086773 |
Please drop dependency on python3-astunparse |
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|
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| 1081150 |
r-cran-diagnosismed: removed from CRAN repository |
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|
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| 1081177 |
r-cran-epicalc: removed from CRAN repository |
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|
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| 1083236 |
r-cran-seroincidence: homepage defunct, standardize |
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| 1083239 |
r-cran-seroincidence: removed from CRAN repository |
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|
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| 1071106 |
r-cran-sf: autopkgtest regression in testing |
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|
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| 1084108 |
r-cran-spp: removed from CRAN repository |
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|
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| 1087041 |
readucks: Python SyntaxWarning |
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|
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| 1087079 |
seirsplus: Python SyntaxWarning |
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|
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| 1048951 |
seqan3: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1087554 |
seqkit: FTBFS: undefined: decor.DidentRight |
ftbfs, sid, trixie |
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|
| 1086015 |
build for all supported python3 |
|
| 1087093 |
spades: Python SyntaxWarning |
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|
|
| 1075545 |
sumaclust: ftbfs with GCC-14 |
ftbfs, sid, trixie, upstream |
|
|
| 1005713 |
tensorflow FTBFS; bazel still tries to download during build. |
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| 1084624 |
tensorflow: removal of Python standard libraries in Python 3.13 |
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|
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| 170477 |
xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist |
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| 181444 |
xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist |
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| 184072 |
xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist |
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| 184086 |
xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist |
|
| 189616 |
jadetex: Japanese JadeTeX |
|
| 234884 |
Cannot generate PDF when callouts are used |
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| 310148 |
xmlto: pdf output fails with LaTeX errors |
|
| 345637 |
xmltex: behaves as if --force-confold had been given |
|
| 427443 |
provide a documentation index (like tetex had) |
|
| 444084 |
tex4ht: you-on gets extra space |
moreinfo |
| 450941 |
texlive-fonts-extra: cannot use mathtime/belleek |
|
| 468225 |
pdfjam: pdfnup does not use /etc/papersize |
moreinfo |
| 536380 |
HTML mode is spewing some XML |
wontfix |
| 536393 |
HTML mode is specifing image sizes in points, in violation of HTML standard (and sanity) |
|
| 537284 |
Ligature ï¬ becoming ø in avant garde |
|
| 554637 |
tex4ht: Leaves intermediate files |
wontfix |
| 554998 |
Glitches when using hyperref and math mode |
|
| 554999 |
tex4ht: mk4ht should fail when it encounters errors |
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| 572226 |
tex4ht: Incorrect output for align, eqnarray, inline longrightarrow |
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| 596703 |
texlive-publishers has dependencies on files texlive-bibtex-extra but doesn't even recommend it |
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| 604054 |
if hyperref is loaded before glossaries then text size is adapted wrongly |
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| 615596 |
tex4ht: mk4ht dblatex file.tex fails with xtpipes error |
fixed-upstream, patch, pending, upstream |
| 635834 |
texlive-latex-extra: dependency problem: fancytooltips requires acrotex which is not packaged |
wontfix |
| 659772 |
landscape sciposter + hyperref + latex + dvips = center-mirrored image |
|
| 675869 |
make PDF smaller with version1.4 |
|
| 683163 |
xmlto fail to convert example docbook to PDF (LaTeX Error, missing \item?) |
|
| 744309 |
FTBFS Please rebuilt from source flash file |
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| 764122 |
MnSymbol and new[tp]x shouldn't be in the texlive-fonts-extra ghetto |
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| 767872 |
tex4ht: htlatex fails without non-zero exit status |
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| 772378 |
texlive-latex-extra-doc: bashism in /bin/sh script |
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| 774942 |
texlive-latex-extra: package description has too many blank lines and is too long |
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| 862966 |
texlive-fonts-extra: Missing yinitas.tfm which makes yfonts.sty unusable |
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| 866114 |
texlive-fonts-extra: Icon errors when installed alongside fonts-font-awesome |
moreinfo |
| 877769 |
Q: files (.tex, .cls, Makefile, etc...) compressed to .gz (but seem should not) |
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| 877770 |
Q: Why -doc package depends on tex? |
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| 916796 |
IEEEfull.bib: cannot be read in encoding 'utf8' by biber |
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| 917996 |
texlive-pstricks: gs gives undefined in --execute-- when using color.tex with pstricks on plain tex. |
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| 929558 |
texlive-fonts-extra: STIX2 fonts cannot called by their font names by xelatex & fontspec.sty |
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| 930850 |
texlive-latex-extra: Update listings macro separator |
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| 941823 |
tabu: cell background colours broken |
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| 953073 |
texlive-fonts-extra: TwemojiMozilla.ttf is included in 4 Debian packages |
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| 958562 |
texlive-extra-utils: missing man page for pdfcrop |
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| 974724 |
no useful documentation of pdfjam commands |
|
| 997024 |
[greek]babel + cleveref + pagenumbering + label = â |
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| 1008808 |
texlive-games: [chess.sty] Incorrect usage of babel breaks package |
wontfix |
| 1011759 |
texlive-extra-utils: Script pdfjoin has vanished |
wontfix |
| 1019236 |
Why does mere inclusion of pstricks change A4 to letter? |
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| 1021166 |
texlive-fonts-extra: sourceserifpro doesn't work with xeLaTeX |
|
| 1023586 |
texlive-extra-utils: pythontex won't find python (when on python3) |
|
| 1026789 |
Broken vf files in package? |
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| 1029325 |
texlive-latex-extra: adequate reports broken-symlink |
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| 1040158 |
texlive-latex-extra: tex4ebook with mathml prints \lim, limsup etc. in italics |
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| 1043258 |
texlive-latex-extra-doc: moderncv.tex fails to build |
|
| 1067614 |
texlive-latex-extra: pdfcomment docs reference the cloud instead of local files; also font option broken |
wontfix |
| 1070721 |
texlive-fonts-extra: Weird dependencies |
|
| 1070802 |
texlive-latex-extra: (regression) acro no longer compiles |
upstream |
| 1072743 |
texlive-extra-utils: pdfxup: --pages option fails if page range omits start or end of range |
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|
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| 1083799 |
tnseq-transit: (build-)depends on deprecated module python3-pkg-resources |
sid, trixie |
|
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| 1073358 |
toil: FTBFS: ModuleNotFoundError: No module named 'boto' |
ftbfs, sid, trixie |
| 1084681 |
toil: removal of Python standard libraries in Python 3.13 |
fixed-upstream |
| 1087116 |
toil: Python SyntaxWarning |
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|
|
| 1049071 |
tombo: Fails to build source after successful build |
ftbfs, sid, trixie |
| 1083801 |
tombo: (build-)depends on deprecated module python3-pkg-resources |
sid, trixie |
| 1087117 |
tombo: Python SyntaxWarning |
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|
|
| 1048043 |
trinculo: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 980509 |
umap-learn: Binary package name should be python3-umap-learn |
pending |
| 1058489 |
umap-learn: please (temporarily) drop python3-numba dependencies |
|
| 1071816 |
umap-learn: FTBFS: E TypeError: exceptions must be derived from Warning, not <class 'NoneType'> |
ftbfs |
|
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| 1087155 |
umis: Python SyntaxWarning |
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|
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| 1087156 |
uncalled: Python SyntaxWarning |
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|
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| 1048635 |
unicycler: Fails to build source after successful build |
ftbfs, sid, trixie |
| 1087157 |
unicycler: Python SyntaxWarning |
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|
|
| 976511 |
vg: FTBFS on arm64: configure: error: Could not find a version of the library! |
bookworm, bullseye, ftbfs, sid, trixie |
| 987184 |
vg -- excessive variants built, and not tested |
|
| 1013061 |
vg: ftbfs with GCC-12 |
bookworm, ftbfs, sid, trixie |
| 1015699 |
vg: ftbfs with LTO (link time optimization) enabled |
sid, trixie |
| 1043312 |
vg: Replace transitional bsdmainutils |
pending |
| 1084554 |
vg: removal of Python standard libraries in Python 3.13 |
experimental, sid, trixie |
|
|
| 348845 |
please provide a male character as well |
upstream |
| 359991 |
Please add 'daemon' mode |
|
| 371826 |
new exercises |
upstream |
| 388570 |
option for less disk intensity |
upstream |
| 533294 |
Improve .desktop file: Office category fits better than Accesibility and german comment |
|
| 545585 |
workrave: Cant resume after unlocking screen |
|
| 598402 |
workrave: Should count suspend time as pauses |
|
| 632232 |
workrave: Changing sound options has no effect |
|
| 695344 |
Installs gobject-introspection / library files into system wide paths |
|
| 783872 |
[workrave] xfce4 panel plugin uses the wrong path in desktop file |
|
| 789044 |
workrave: lock was blocked by another application |
|
| 804170 |
workrave: Workrave resets system volume levels |
|
| 829450 |
workrave: Cannot interract with Workrave icon in KDE system tray |
|
| 843563 |
Workrave applet unusable |
|
| 853933 |
workrave: segfault when trying to start under wayland |
upstream |
| 911054 |
workrave: desktop instability in multimonitor (3) setup |
|
| 921765 |
workrave: occasionally runs into false activity detection |
|
| 943477 |
workrave: multiple overlaying popups in multimonitor setup |
|
| 980873 |
workrave: Break warning window grabs keyboard focus on Wayland |
|
| 988064 |
workrave: applet does not display timer after screen lock |
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|
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| 1087194 |
yanosim: Python SyntaxWarning |
|
Open bugs in suggested packages
1 serious, 1 important, 2 normal
|
|
| 928076 |
bcbio: Workflows not ready for non-developers to depend on. |
|
| 1018312 |
bcbio: build-depends on python3-nose or uses it for autopkgtest |
sid, trixie |
|
|
| 1075928 |
python-anndata: tests fail with scipy 1.13 |
|
|
|
| 1035277 |
python-seqcluster: please add autopkgtests (to add coverage for python3-numpy) |
|
Done bugs
|
|
| 1074483 |
dcmtk: CVE-2024-27628 |
fixed-upstream, patch, security, upstream |
|
|
| 1044536 |
fasta3: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1070387 |
gdcm: CVE-2024-25569 CVE-2024-22373 CVE-2024-22391 |
security, upstream |
|
|
| 1033703 |
gffread: autopkgtest regression: test dependency not in testing |
bookworm-ignore |
|
|
| 1086272 |
gromacs: FTBFS with OpenMPI 5 on systems with less than 4 CPUs |
ftbfs |
|
|
| 1082688 |
node-shiny-server: FTBFS: TypeError: Cannot read properties of undefined (reading 'define') |
ftbfs |
|
|
| 1081672 |
FTBFS with Python 3.13 |
ftbfs, upstream |
| 1084663 |
pairtools: removal of Python standard libraries in Python 3.13 |
ftbfs, upstream |
| 1085765 |
pairtools: Python SyntaxWarning |
|
|
|
| 1086156 |
ftbfs: test failure: DSSP failed to produce an output |
ftbfs |
|
|
| 1084632 |
python-cgecore: removal of Python standard libraries in Python 3.13 |
sid, trixie |
| 1085895 |
python-cgecore: Python SyntaxWarning |
|
|
|
| 1086899 |
python-pauvre: Python SyntaxWarning |
|
|
|
| 1083675 |
python-pbcore: (build-)depends on deprecated module python3-pkg-resources |
sid, trixie |
|
|
| 1081673 |
FTBFS with Python 3.13 |
fixed-upstream, patch, upstream |
|
|
| 1086965 |
python-treetime: Python SyntaxWarning |
|
|
|
| 994423 |
pytorch: Baseline violation on armhf |
bookworm, bullseye, experimental, ftbfs, sid, trixie |
| 1056388 |
FTBFS with fmtlib 10 |
fixed-upstream, ftbfs |
| 1060097 |
pytorch: FBFS: /<<PKGBUILDDIR>>/aten/src/ATen/native/quantized/cpu/qlinear_prepack.cpp:249:103: error: cannot convert âdnnl::memory::data_typeâ to âconst ideep::dims&â {aka âconst std::vector<long int>&â} |
ftbfs |
| 1070379 |
pytorch: CVE-2024-31580 CVE-2024-31583 CVE-2024-31584 |
security, upstream |
|
|
| 1087456 |
samtools: autopkgtest regression with htslib 1.21 |
|
|
|
| 1087373 |
seqan3: FTBFS: Some parallel tests fail on single-cpu systems |
ftbfs |
|
|
| 976523 |
spades: FTBFS: jemalloc_internal.h:292:6: error: #error "No LG_QUANTUM definition for architecture; specify via CPPFLAGS" |
bookworm, bullseye, ftbfs, sid, trixie |
|
|
| 1035857 |
texlive-fonts-extra: broken font symlinks for junicode |
bookworm-ignore |
| 1085685 |
texlive-extra-utils: chklref does not find perl |
|
| 1086757 |
texlive-latex-extra: Minted stopped to work: Error: 'sh: 1: latexminted: not found' |
|
| 1087479 |
texlive-latex-extra: minted broken |
|
|
|
| 1081347 |
vg: intent to file removal bug |
sid, trixie |
|
|
| 955965 |
workrave: Depends on deprecated dbus-glib |
bookworm, bullseye, sid |
|
