Summary
Bugs of task
covid-19
Total bugs:
203
Open bugs:
180
Fixed bugs:
23
Links to other tasks
Legend
Severity | Dependent | Suggested |
critical |
0 |
0 |
grave |
0 |
0 |
serious |
15 |
1 |
important |
30 |
1 |
normal |
90 |
2 |
minor |
23 |
0 |
wishlist |
18 |
0 |
|
Summary bugs page of task Covid-19
Immediately looking into bugs of the dependencies of this task is advised (1800)*
Open bugs in dependent packages
15 serious, 30 important, 90 normal, 23 minor, 18 wishlist
|
920282 |
abyss fails to build on hurd - googletest EXPECT_DEATH |
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1049876 |
bbhash: FTBFS on 32 bit architectures |
ftbfs, sid, trixie |
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1085372 |
busco: Python SyntaxWarning |
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1085416 |
changeo: Python SyntaxWarning |
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1083349 |
cwltool: (build-)depends on deprecated module python3-pkg-resources |
sid, trixie |
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935879 |
Update to use CharLS 2.0 |
upstream |
1055872 |
CP-2275: "NaN", "+Infinity" and "-Infinity" |
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1055873 |
dcm2json is missing --convert-un for CP-1066 EVRLE |
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1056048 |
Memory leak in dcm2json |
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1060677 |
Rounding error in OFStandard::atof |
confirmed, fixed-upstream, upstream |
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1085542 |
discosnp: Python SyntaxWarning |
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1067271 |
freebayes: FTBFS: dh_auto_test: error: cd build && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 MESON_TESTTHREADS=8 meson test -v --timeout-multiplier 100 returned exit code 5 |
fixed-upstream, ftbfs |
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731435 |
warning: iteration 55823u invokes undefined behavior [-Waggressive-loop-optimizations] |
upstream |
749783 |
gdcm: Conflicting declarations of jpeg_memory_mgr may lead to invalid function calls |
|
826048 |
Faulty CMake file impairs compiling against GDCM |
moreinfo, wontfix |
1086435 |
libgdcm-tools: gdcmscu fails with "ProtocolStream as nullptr is invalid" |
upstream |
|
644397 |
Provide runtime detection for CPU SIMD capabilities |
upstream |
983942 |
gromacs: ftbfs with -march=x86-64-v3 |
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1085638 |
htseq: Python SyntaxWarning |
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1047324 |
kallisto: Fails to build source after successful build |
ftbfs, sid, trixie |
1057131 |
kallisto: add support for loongarch64 in d/control |
patch, pending |
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1006686 |
libchipcard-dev: undefined variable in libchipcard-client.pc |
fixed-upstream, patch, upstream |
1006687 |
libchipcard6: card.c leaks memory |
patch, upstream |
|
934619 |
libmaus2 FTBFS (mostly 32bit): error: no matching function for call |
fixed-upstream, ftbfs, help, upstream |
1069691 |
libmaus2: FTBFS on arm64: what(): AutoArray<unsigned long,alloc_type_memalign_cacheline> failed to allocate 1398102 elements (11184816 bytes) |
confirmed, ftbfs, upstream |
|
1047978 |
lumpy-sv: Fails to build source after successful build |
ftbfs, sid, trixie |
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1086362 |
macromoleculebuilder: FTBFS: /usr/bin/ld: libMMB.so.4.0: undefined reference to `gzerror' |
ftbfs |
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1045898 |
nanook: Fails to build source after successful build |
ftbfs, sid, trixie |
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1085733 |
nanosv: Python SyntaxWarning |
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956850 |
ncbi-blast+: Please provide /usr/bin/legacy_blast.pl |
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984871 |
ncbi-blast+: Missing headers for shared libraries |
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1010110 |
ncbi-blast+: terminate called after throwing an instance of 'ncbi::CIO_Exception' |
wontfix |
1077777 |
ncbi-blast+: makeblastdb yields broken DBs on s390x (BE generally?) |
upstream |
1080479 |
ncbi-blast+: failure to create blastdb v5 on riscv64 |
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1001387 |
Wishlist: Package Stone of Orthanc Webviewer |
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1081672 |
FTBFS with Python 3.13 |
upstream |
1084663 |
pairtools: removal of Python standard libraries in Python 3.13 |
upstream |
1085765 |
pairtools: Python SyntaxWarning |
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1048822 |
plink2: Fails to build source after successful build |
ftbfs, sid, trixie |
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1085786 |
porechop: Python SyntaxWarning |
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1074546 |
FTBFS with OCaml 5.2.0 (Uses C functions without caml_ prefix) |
ftbfs |
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1085789 |
presto: Python SyntaxWarning |
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1082368 |
FTBFS: TestIntegration.testIntegration: AssertionError: 1 != 0 |
confirmed, ftbfs |
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1018448 |
pynn: build-depends on python3-nose or uses it for autopkgtest |
fixed-upstream, sid, trixie |
1071337 |
pynn: FTBFS: ERROR: unittests.test_recording.test_get |
ftbfs |
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1084632 |
python-cgecore: removal of Python standard libraries in Python 3.13 |
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1085895 |
python-cgecore: Python SyntaxWarning |
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1058479 |
python-cogent: please (temporarily) drop python3-numba dependencies |
wontfix |
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1083626 |
python-depinfo: (build-)depends on deprecated module python3-pkg-resources |
sid, trixie |
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1081673 |
FTBFS with Python 3.13 |
fixed-upstream, patch, upstream |
|
1087457 |
python3-pysam: autopkgtest regression with htslib 1.21 |
upstream |
|
1079359 |
SyntaxWarning: invalid escape sequence '\[' |
newcomer, upstream |
1083698 |
python-pyvcf: (build-)depends on deprecated module python3-pkg-resources |
sid, trixie |
|
1079788 |
python-questplus: test_thurstone_scaling fails on arm64 with scipy 1.14 |
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1046218 |
python-streamz: Fails to build source after successful build |
ftbfs, sid, trixie |
1083714 |
python-streamz: (build-)depends on deprecated module python3-pkg-resources |
sid, trixie |
|
983517 |
pytorch: Build documentation |
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1057644 |
pytorch: build for all supported Python versions |
wontfix |
1083727 |
pytorch: (build-)depends on deprecated module python3-pkg-resources |
sid, trixie |
1083729 |
pytorch: (build-)depends on deprecated module python3-pkg-resources |
sid, trixie |
1086773 |
Please drop dependency on python3-astunparse |
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1081150 |
r-cran-diagnosismed: removed from CRAN repository |
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1081177 |
r-cran-epicalc: removed from CRAN repository |
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1083236 |
r-cran-seroincidence: homepage defunct, standardize |
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1083239 |
r-cran-seroincidence: removed from CRAN repository |
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1071106 |
r-cran-sf: autopkgtest regression in testing |
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1084108 |
r-cran-spp: removed from CRAN repository |
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1087041 |
readucks: Python SyntaxWarning |
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1087456 |
samtools: autopkgtest regression with htslib 1.21 |
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1087079 |
seirsplus: Python SyntaxWarning |
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1048951 |
seqan3: Fails to build source after successful build |
ftbfs, sid, trixie |
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1086015 |
build for all supported python3 |
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1087093 |
spades: Python SyntaxWarning |
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1075545 |
sumaclust: ftbfs with GCC-14 |
ftbfs, sid, trixie, upstream |
|
1005713 |
tensorflow FTBFS; bazel still tries to download during build. |
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1084624 |
tensorflow: removal of Python standard libraries in Python 3.13 |
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170477 |
xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist |
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181444 |
xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist |
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184072 |
xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist |
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184086 |
xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist |
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189616 |
jadetex: Japanese JadeTeX |
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234884 |
Cannot generate PDF when callouts are used |
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310148 |
xmlto: pdf output fails with LaTeX errors |
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345637 |
xmltex: behaves as if --force-confold had been given |
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427443 |
provide a documentation index (like tetex had) |
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444084 |
tex4ht: you-on gets extra space |
moreinfo |
450941 |
texlive-fonts-extra: cannot use mathtime/belleek |
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468225 |
pdfjam: pdfnup does not use /etc/papersize |
moreinfo |
536380 |
HTML mode is spewing some XML |
wontfix |
536393 |
HTML mode is specifing image sizes in points, in violation of HTML standard (and sanity) |
|
537284 |
Ligature ï¬ becoming ø in avant garde |
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554637 |
tex4ht: Leaves intermediate files |
wontfix |
554998 |
Glitches when using hyperref and math mode |
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554999 |
tex4ht: mk4ht should fail when it encounters errors |
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572226 |
tex4ht: Incorrect output for align, eqnarray, inline longrightarrow |
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596703 |
texlive-publishers has dependencies on files texlive-bibtex-extra but doesn't even recommend it |
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604054 |
if hyperref is loaded before glossaries then text size is adapted wrongly |
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615596 |
tex4ht: mk4ht dblatex file.tex fails with xtpipes error |
fixed-upstream, patch, pending, upstream |
635834 |
texlive-latex-extra: dependency problem: fancytooltips requires acrotex which is not packaged |
wontfix |
659772 |
landscape sciposter + hyperref + latex + dvips = center-mirrored image |
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675869 |
make PDF smaller with version1.4 |
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683163 |
xmlto fail to convert example docbook to PDF (LaTeX Error, missing \item?) |
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744309 |
FTBFS Please rebuilt from source flash file |
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764122 |
MnSymbol and new[tp]x shouldn't be in the texlive-fonts-extra ghetto |
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767872 |
tex4ht: htlatex fails without non-zero exit status |
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772378 |
texlive-latex-extra-doc: bashism in /bin/sh script |
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774942 |
texlive-latex-extra: package description has too many blank lines and is too long |
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862966 |
texlive-fonts-extra: Missing yinitas.tfm which makes yfonts.sty unusable |
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866114 |
texlive-fonts-extra: Icon errors when installed alongside fonts-font-awesome |
moreinfo |
877769 |
Q: files (.tex, .cls, Makefile, etc...) compressed to .gz (but seem should not) |
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877770 |
Q: Why -doc package depends on tex? |
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916796 |
IEEEfull.bib: cannot be read in encoding 'utf8' by biber |
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917996 |
texlive-pstricks: gs gives undefined in --execute-- when using color.tex with pstricks on plain tex. |
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929558 |
texlive-fonts-extra: STIX2 fonts cannot called by their font names by xelatex & fontspec.sty |
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930850 |
texlive-latex-extra: Update listings macro separator |
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941823 |
tabu: cell background colours broken |
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953073 |
texlive-fonts-extra: TwemojiMozilla.ttf is included in 4 Debian packages |
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958562 |
texlive-extra-utils: missing man page for pdfcrop |
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974724 |
no useful documentation of pdfjam commands |
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997024 |
[greek]babel + cleveref + pagenumbering + label = â |
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1008808 |
texlive-games: [chess.sty] Incorrect usage of babel breaks package |
wontfix |
1011759 |
texlive-extra-utils: Script pdfjoin has vanished |
wontfix |
1019236 |
Why does mere inclusion of pstricks change A4 to letter? |
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1021166 |
texlive-fonts-extra: sourceserifpro doesn't work with xeLaTeX |
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1023586 |
texlive-extra-utils: pythontex won't find python (when on python3) |
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1026789 |
Broken vf files in package? |
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1029325 |
texlive-latex-extra: adequate reports broken-symlink |
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1040158 |
texlive-latex-extra: tex4ebook with mathml prints \lim, limsup etc. in italics |
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1043258 |
texlive-latex-extra-doc: moderncv.tex fails to build |
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1067614 |
texlive-latex-extra: pdfcomment docs reference the cloud instead of local files; also font option broken |
wontfix |
1070721 |
texlive-fonts-extra: Weird dependencies |
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1070802 |
texlive-latex-extra: (regression) acro no longer compiles |
upstream |
1072743 |
texlive-extra-utils: pdfxup: --pages option fails if page range omits start or end of range |
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1086757 |
texlive-latex-extra: Minted stopped to work: Error: 'sh: 1: latexminted: not found' |
pending |
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1083799 |
tnseq-transit: (build-)depends on deprecated module python3-pkg-resources |
sid, trixie |
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1073358 |
toil: FTBFS: ModuleNotFoundError: No module named 'boto' |
ftbfs, sid, trixie |
1084681 |
toil: removal of Python standard libraries in Python 3.13 |
fixed-upstream |
1087116 |
toil: Python SyntaxWarning |
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1049071 |
tombo: Fails to build source after successful build |
ftbfs, sid, trixie |
1083801 |
tombo: (build-)depends on deprecated module python3-pkg-resources |
sid, trixie |
1087117 |
tombo: Python SyntaxWarning |
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1048043 |
trinculo: Fails to build source after successful build |
ftbfs, sid, trixie |
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980509 |
umap-learn: Binary package name should be python3-umap-learn |
pending |
1058489 |
umap-learn: please (temporarily) drop python3-numba dependencies |
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1071816 |
umap-learn: FTBFS: E TypeError: exceptions must be derived from Warning, not <class 'NoneType'> |
ftbfs |
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1087155 |
umis: Python SyntaxWarning |
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1087156 |
uncalled: Python SyntaxWarning |
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1048635 |
unicycler: Fails to build source after successful build |
ftbfs, sid, trixie |
1087157 |
unicycler: Python SyntaxWarning |
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976511 |
vg: FTBFS on arm64: configure: error: Could not find a version of the library! |
bookworm, bullseye, ftbfs, sid, trixie |
987184 |
vg -- excessive variants built, and not tested |
|
1013061 |
vg: ftbfs with GCC-12 |
bookworm, ftbfs, sid, trixie |
1015699 |
vg: ftbfs with LTO (link time optimization) enabled |
sid, trixie |
1043312 |
vg: Replace transitional bsdmainutils |
pending |
1084554 |
vg: removal of Python standard libraries in Python 3.13 |
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348845 |
please provide a male character as well |
upstream |
359991 |
Please add 'daemon' mode |
|
371826 |
new exercises |
upstream |
388570 |
option for less disk intensity |
upstream |
533294 |
Improve .desktop file: Office category fits better than Accesibility and german comment |
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545585 |
workrave: Cant resume after unlocking screen |
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598402 |
workrave: Should count suspend time as pauses |
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632232 |
workrave: Changing sound options has no effect |
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695344 |
Installs gobject-introspection / library files into system wide paths |
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783872 |
[workrave] xfce4 panel plugin uses the wrong path in desktop file |
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789044 |
workrave: lock was blocked by another application |
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804170 |
workrave: Workrave resets system volume levels |
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829450 |
workrave: Cannot interract with Workrave icon in KDE system tray |
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843563 |
Workrave applet unusable |
|
853933 |
workrave: segfault when trying to start under wayland |
upstream |
911054 |
workrave: desktop instability in multimonitor (3) setup |
|
921765 |
workrave: occasionally runs into false activity detection |
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943477 |
workrave: multiple overlaying popups in multimonitor setup |
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980873 |
workrave: Break warning window grabs keyboard focus on Wayland |
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988064 |
workrave: applet does not display timer after screen lock |
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1087194 |
yanosim: Python SyntaxWarning |
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Open bugs in suggested packages
1 serious, 1 important, 2 normal
|
928076 |
bcbio: Workflows not ready for non-developers to depend on. |
|
1018312 |
bcbio: build-depends on python3-nose or uses it for autopkgtest |
sid, trixie |
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1075928 |
python-anndata: tests fail with scipy 1.13 |
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1035277 |
python-seqcluster: please add autopkgtests (to add coverage for python3-numpy) |
|
Done bugs
|
1074483 |
dcmtk: CVE-2024-27628 |
fixed-upstream, patch, security, upstream |
|
1044536 |
fasta3: Fails to build source after successful build |
ftbfs, sid, trixie |
|
1070387 |
gdcm: CVE-2024-25569 CVE-2024-22373 CVE-2024-22391 |
security, upstream |
|
1033703 |
gffread: autopkgtest regression: test dependency not in testing |
bookworm-ignore |
|
1086272 |
gromacs: FTBFS with OpenMPI 5 on systems with less than 4 CPUs |
ftbfs |
|
1082688 |
node-shiny-server: FTBFS: TypeError: Cannot read properties of undefined (reading 'define') |
ftbfs |
|
1083552 |
poretools: (build-)depends on deprecated module python3-pkg-resources |
sid, trixie |
|
1086156 |
ftbfs: test failure: DSSP failed to produce an output |
ftbfs |
|
1086899 |
python-pauvre: Python SyntaxWarning |
|
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1083675 |
python-pbcore: (build-)depends on deprecated module python3-pkg-resources |
sid, trixie |
|
1083691 |
python-pyfaidx: (build-)depends on deprecated module python3-pkg-resources |
sid, trixie |
|
1086965 |
python-treetime: Python SyntaxWarning |
|
|
994423 |
pytorch: Baseline violation on armhf |
bookworm, bullseye, experimental, ftbfs, sid, trixie |
1056388 |
FTBFS with fmtlib 10 |
fixed-upstream, ftbfs |
1060097 |
pytorch: FBFS: /<<PKGBUILDDIR>>/aten/src/ATen/native/quantized/cpu/qlinear_prepack.cpp:249:103: error: cannot convert âdnnl::memory::data_typeâ to âconst ideep::dims&â {aka âconst std::vector<long int>&â} |
ftbfs |
1070379 |
pytorch: CVE-2024-31580 CVE-2024-31583 CVE-2024-31584 |
security, upstream |
1085004 |
pytorch: FTBFS: error: no matching function for call to âllvm::TargetMachine::registerPassBuilderCallbacks(llvm::PassBuilder&, bool)â |
ftbfs |
|
1087373 |
seqan3: FTBFS: Some parallel tests fail on single-cpu systems |
ftbfs |
|
976523 |
spades: FTBFS: jemalloc_internal.h:292:6: error: #error "No LG_QUANTUM definition for architecture; specify via CPPFLAGS" |
bookworm, bullseye, ftbfs, sid, trixie |
|
1035857 |
texlive-fonts-extra: broken font symlinks for junicode |
bookworm-ignore |
1085685 |
texlive-extra-utils: chklref does not find perl |
|
|
1081347 |
vg: intent to file removal bug |
sid, trixie |
|
955965 |
workrave: Depends on deprecated dbus-glib |
bookworm, bullseye, sid |
|