Summary
Bugs of task
covid-19
Total bugs:
211
Open bugs:
162
Fixed bugs:
49
Links to other tasks
Legend
Severity | Dependent | Suggested |
critical |
0 |
0 |
grave |
0 |
0 |
serious |
17 |
1 |
important |
27 |
1 |
normal |
71 |
2 |
minor |
20 |
0 |
wishlist |
23 |
0 |
|
Summary bugs page of task Covid-19
Immediately looking into bugs of the dependencies of this task is advised (1635)*
Open bugs in dependent packages
17 serious, 27 important, 71 normal, 20 minor, 23 wishlist
|
920282 |
abyss fails to build on hurd - googletest EXPECT_DEATH |
|
|
1049876 |
bbhash: FTBFS on 32 bit architectures |
ftbfs, sid, trixie |
|
1083349 |
cwltool: (build-)depends on deprecated module python3-pkg-resources |
sid, trixie |
|
935879 |
Update to use CharLS 2.0 |
upstream |
1055872 |
CP-2275: "NaN", "+Infinity" and "-Infinity" |
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1055873 |
dcm2json is missing --convert-un for CP-1066 EVRLE |
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1056048 |
Memory leak in dcm2json |
|
1060677 |
Rounding error in OFStandard::atof |
confirmed, fixed-upstream, upstream |
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1067271 |
freebayes: FTBFS: dh_auto_test: error: cd build && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 MESON_TESTTHREADS=8 meson test -v --timeout-multiplier 100 returned exit code 5 |
ftbfs |
|
731435 |
warning: iteration 55823u invokes undefined behavior [-Waggressive-loop-optimizations] |
upstream |
749783 |
gdcm: Conflicting declarations of jpeg_memory_mgr may lead to invalid function calls |
|
826048 |
Faulty CMake file impairs compiling against GDCM |
moreinfo, wontfix |
1086435 |
libgdcm-tools: gdcmscu fails with "ProtocolStream as nullptr is invalid" |
upstream |
|
644397 |
Provide runtime detection for CPU SIMD capabilities |
upstream |
983942 |
gromacs: ftbfs with -march=x86-64-v3 |
|
|
1088745 |
htscodecs: Please fix the symbols for all amd64 |
patch |
|
1047324 |
kallisto: Fails to build source after successful build |
ftbfs, sid, trixie |
1057131 |
kallisto: add support for loongarch64 in d/control |
patch, pending |
|
1006686 |
libchipcard-dev: undefined variable in libchipcard-client.pc |
fixed-upstream, patch, upstream |
1006687 |
libchipcard6: card.c leaks memory |
patch, upstream |
|
934619 |
libmaus2 FTBFS (mostly 32bit): error: no matching function for call |
fixed-upstream, ftbfs, help, upstream |
1069691 |
libmaus2: FTBFS on arm64: what(): AutoArray<unsigned long,alloc_type_memalign_cacheline> failed to allocate 1398102 elements (11184816 bytes) |
confirmed, ftbfs, upstream |
|
1047978 |
lumpy-sv: Fails to build source after successful build |
ftbfs, sid, trixie |
|
1088028 |
megahit: consider unembedding parallel-hashmap |
|
|
1088472 |
multiqc: move from twitter-bootstrap{3,4} to bootstrap-html (v5) |
upstream |
|
956850 |
ncbi-blast+: Please provide /usr/bin/legacy_blast.pl |
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984871 |
ncbi-blast+: Missing headers for shared libraries |
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1010110 |
ncbi-blast+: terminate called after throwing an instance of 'ncbi::CIO_Exception' |
wontfix |
1077777 |
ncbi-blast+: makeblastdb yields broken DBs on s390x (BE generally?) |
upstream |
1080479 |
ncbi-blast+: failure to create blastdb v5 on riscv64 |
|
|
1001387 |
Wishlist: Package Stone of Orthanc Webviewer |
|
|
1048822 |
plink2: Fails to build source after successful build |
ftbfs, sid, trixie |
|
1074546 |
FTBFS with OCaml 5.2.0 (Uses C functions without caml_ prefix) |
ftbfs |
|
1082368 |
FTBFS: TestIntegration.testIntegration: AssertionError: 1 != 0 |
confirmed, ftbfs |
|
1018448 |
pynn: build-depends on python3-nose or uses it for autopkgtest |
fixed-upstream, sid, trixie |
1071337 |
pynn: FTBFS: ERROR: unittests.test_recording.test_get |
ftbfs |
|
1058479 |
python-cogent: please (temporarily) drop python3-numba dependencies |
wontfix |
1090269 |
python-cogent: FTBFS: E ImportError: Numba could not be imported. |
ftbfs |
|
1089095 |
python-pbcore: please make the build reproducible |
patch |
|
1090283 |
python-pybedtools: FTBFS: NameError: name 'iterator' is not defined |
ftbfs |
|
1087457 |
python3-pysam: autopkgtest regression with htslib 1.21 |
fixed-upstream, upstream |
|
1079788 |
python-questplus: test_thurstone_scaling fails on arm64 with scipy 1.14 |
ftbfs, patch, pending |
|
1046218 |
python-streamz: Fails to build source after successful build |
ftbfs, sid, trixie |
1083714 |
python-streamz: (build-)depends on deprecated module python3-pkg-resources |
sid, trixie |
|
983517 |
pytorch: Build documentation |
|
1057644 |
pytorch: build for all supported Python versions |
wontfix |
1083727 |
pytorch: (build-)depends on deprecated module python3-pkg-resources |
sid, trixie |
1083729 |
pytorch: (build-)depends on deprecated module python3-pkg-resources |
sid, trixie |
1088810 |
pytorch: FTBFS with Make 4.4.1 |
ftbfs, patch, pending, sid, trixie |
1090052 |
pytorch: missing error trapping in Makefiles |
|
1090053 |
libtorch2.5: installs dangling symlink /usr/lib/x86_64-linux-gnu/libnnapi_backend.so.2.5 deleted by ldconfig |
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|
1081150 |
r-cran-diagnosismed: removed from CRAN repository |
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1081177 |
r-cran-epicalc: removed from CRAN repository |
|
|
1083236 |
r-cran-seroincidence: homepage defunct, standardize |
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1083239 |
r-cran-seroincidence: removed from CRAN repository |
|
|
1071106 |
r-cran-sf: autopkgtest regression in testing |
|
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1084108 |
r-cran-spp: removed from CRAN repository |
|
|
1088027 |
salmon: consider unembedding parallel-hashmap |
|
|
1087079 |
seirsplus: Python SyntaxWarning |
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|
1048951 |
seqan3: Fails to build source after successful build |
ftbfs, sid, trixie |
|
1088534 |
snakemake: move from twitter-bootstrap{3,4} to bootstrap-html (v5) |
upstream |
|
1086015 |
build for all supported python3 |
|
1088026 |
spades: consider unembedding parallel-hashmap |
|
|
1005713 |
tensorflow FTBFS; bazel still tries to download during build. |
|
1084624 |
tensorflow: removal of Python standard libraries in Python 3.13 |
|
|
170477 |
xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist |
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181444 |
xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist |
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184072 |
xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist |
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184086 |
xmltex: can't make DVI/PS from DocBook orderedlist/itemizedlist |
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189616 |
jadetex: Japanese JadeTeX |
|
234884 |
Cannot generate PDF when callouts are used |
|
310148 |
xmlto: pdf output fails with LaTeX errors |
|
345637 |
xmltex: behaves as if --force-confold had been given |
|
427443 |
provide a documentation index (like tetex had) |
|
444084 |
tex4ht: you-on gets extra space |
moreinfo |
450941 |
texlive-fonts-extra: cannot use mathtime/belleek |
|
468225 |
pdfjam: pdfnup does not use /etc/papersize |
moreinfo |
536380 |
HTML mode is spewing some XML |
wontfix |
536393 |
HTML mode is specifing image sizes in points, in violation of HTML standard (and sanity) |
|
537284 |
Ligature ï¬ becoming ø in avant garde |
|
554637 |
tex4ht: Leaves intermediate files |
wontfix |
554998 |
Glitches when using hyperref and math mode |
|
554999 |
tex4ht: mk4ht should fail when it encounters errors |
|
572226 |
tex4ht: Incorrect output for align, eqnarray, inline longrightarrow |
|
596703 |
texlive-publishers has dependencies on files texlive-bibtex-extra but doesn't even recommend it |
|
604054 |
if hyperref is loaded before glossaries then text size is adapted wrongly |
|
615596 |
tex4ht: mk4ht dblatex file.tex fails with xtpipes error |
fixed-upstream, patch, pending, upstream |
635834 |
texlive-latex-extra: dependency problem: fancytooltips requires acrotex which is not packaged |
wontfix |
659772 |
landscape sciposter + hyperref + latex + dvips = center-mirrored image |
|
675869 |
make PDF smaller with version1.4 |
|
683163 |
xmlto fail to convert example docbook to PDF (LaTeX Error, missing \item?) |
|
744309 |
FTBFS Please rebuilt from source flash file |
|
764122 |
MnSymbol and new[tp]x shouldn't be in the texlive-fonts-extra ghetto |
|
767872 |
tex4ht: htlatex fails without non-zero exit status |
|
772378 |
texlive-latex-extra-doc: bashism in /bin/sh script |
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774942 |
texlive-latex-extra: package description has too many blank lines and is too long |
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862966 |
texlive-fonts-extra: Missing yinitas.tfm which makes yfonts.sty unusable |
|
866114 |
texlive-fonts-extra: Icon errors when installed alongside fonts-font-awesome |
moreinfo |
877769 |
Q: files (.tex, .cls, Makefile, etc...) compressed to .gz (but seem should not) |
|
877770 |
Q: Why -doc package depends on tex? |
|
916796 |
IEEEfull.bib: cannot be read in encoding 'utf8' by biber |
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917996 |
texlive-pstricks: gs gives undefined in --execute-- when using color.tex with pstricks on plain tex. |
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929558 |
texlive-fonts-extra: STIX2 fonts cannot called by their font names by xelatex & fontspec.sty |
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930850 |
texlive-latex-extra: Update listings macro separator |
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941823 |
tabu: cell background colours broken |
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953073 |
texlive-fonts-extra: TwemojiMozilla.ttf is included in 4 Debian packages |
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958562 |
texlive-extra-utils: missing man page for pdfcrop |
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974724 |
no useful documentation of pdfjam commands |
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997024 |
[greek]babel + cleveref + pagenumbering + label = â |
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1008808 |
texlive-games: [chess.sty] Incorrect usage of babel breaks package |
wontfix |
1011759 |
texlive-extra-utils: Script pdfjoin has vanished |
wontfix |
1019236 |
Why does mere inclusion of pstricks change A4 to letter? |
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1021166 |
texlive-fonts-extra: sourceserifpro doesn't work with xeLaTeX |
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1023586 |
texlive-extra-utils: pythontex won't find python (when on python3) |
|
1026789 |
Broken vf files in package? |
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1029325 |
texlive-latex-extra: adequate reports broken-symlink |
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1040158 |
texlive-latex-extra: tex4ebook with mathml prints \lim, limsup etc. in italics |
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1043258 |
texlive-latex-extra-doc: moderncv.tex fails to build |
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1067614 |
texlive-latex-extra: pdfcomment docs reference the cloud instead of local files; also font option broken |
wontfix |
1070721 |
texlive-fonts-extra: Weird dependencies |
|
1070802 |
texlive-latex-extra: (regression) acro no longer compiles |
upstream |
1072743 |
texlive-extra-utils: pdfxup: --pages option fails if page range omits start or end of range |
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1088082 |
texlive-fonts-extra: please consider exposing OpenType fonts to fontconfig |
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1088732 |
arara.1: Some remarks and editorial changes for this man page |
patch |
1089003 |
bundledoc.1: Some remarks and editorial changes for this man page |
patch |
|
1083799 |
tnseq-transit: (build-)depends on deprecated module python3-pkg-resources |
sid, trixie |
|
1073358 |
toil: FTBFS: ModuleNotFoundError: No module named 'boto' |
ftbfs, sid, trixie |
1084681 |
toil: removal of Python standard libraries in Python 3.13 |
fixed-upstream |
1087116 |
toil: Python SyntaxWarning |
patch, pending |
|
1048043 |
trinculo: Fails to build source after successful build |
ftbfs, sid, trixie |
|
980509 |
umap-learn: Binary package name should be python3-umap-learn |
pending |
1058489 |
umap-learn: please (temporarily) drop python3-numba dependencies |
|
1071816 |
umap-learn: FTBFS: E TypeError: exceptions must be derived from Warning, not <class 'NoneType'> |
ftbfs |
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1089115 |
umis: tracebacks normally fatal during autopkgtest runs |
upstream |
|
976511 |
vg: FTBFS on arm64: configure: error: Could not find a version of the library! |
bookworm, bullseye, ftbfs, sid, trixie |
987184 |
vg -- excessive variants built, and not tested |
|
1015699 |
vg: ftbfs with LTO (link time optimization) enabled |
sid, trixie |
1089275 |
vg: FTBFS with make 4.4.1 |
ftbfs, sid, trixie |
|
348845 |
please provide a male character as well |
upstream |
359991 |
Please add 'daemon' mode |
|
371826 |
new exercises |
upstream |
388570 |
option for less disk intensity |
upstream |
533294 |
Improve .desktop file: Office category fits better than Accesibility and german comment |
|
545585 |
workrave: Cant resume after unlocking screen |
|
598402 |
workrave: Should count suspend time as pauses |
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632232 |
workrave: Changing sound options has no effect |
|
695344 |
Installs gobject-introspection / library files into system wide paths |
|
783872 |
[workrave] xfce4 panel plugin uses the wrong path in desktop file |
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789044 |
workrave: lock was blocked by another application |
|
804170 |
workrave: Workrave resets system volume levels |
|
829450 |
workrave: Cannot interract with Workrave icon in KDE system tray |
|
843563 |
Workrave applet unusable |
|
853933 |
workrave: segfault when trying to start under wayland |
upstream |
911054 |
workrave: desktop instability in multimonitor (3) setup |
|
921765 |
workrave: occasionally runs into false activity detection |
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943477 |
workrave: multiple overlaying popups in multimonitor setup |
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980873 |
workrave: Break warning window grabs keyboard focus on Wayland |
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988064 |
workrave: applet does not display timer after screen lock |
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Open bugs in suggested packages
1 serious, 1 important, 2 normal
|
928076 |
bcbio: Workflows not ready for non-developers to depend on. |
|
1018312 |
bcbio: build-depends on python3-nose or uses it for autopkgtest |
sid, trixie |
|
1075928 |
python-anndata: tests fail with scipy 1.13 |
|
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1035277 |
python-seqcluster: please add autopkgtests (to add coverage for python3-numpy) |
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Done bugs
|
1089249 |
allelecount: FTBFS with make 4.4.1 |
ftbfs, sid, trixie |
|
1085372 |
busco: Python SyntaxWarning |
|
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1085416 |
changeo: Python SyntaxWarning |
|
|
1074483 |
dcmtk: CVE-2024-27628 |
fixed-upstream, patch, security, upstream |
|
1085542 |
discosnp: Python SyntaxWarning |
|
|
1070387 |
gdcm: CVE-2024-25569 CVE-2024-22373 CVE-2024-22391 |
security, upstream |
|
1033703 |
gffread: autopkgtest regression: test dependency not in testing |
bookworm-ignore |
|
1085638 |
htseq: Python SyntaxWarning |
|
|
1086362 |
macromoleculebuilder: FTBFS: /usr/bin/ld: libMMB.so.4.0: undefined reference to `gzerror' |
fixed-upstream, ftbfs |
|
1045898 |
nanook: Fails to build source after successful build |
ftbfs, sid, trixie |
|
1085733 |
nanosv: Python SyntaxWarning |
|
|
1087552 |
nthash: FTBFS on arm64: undefined reference to `omp_get_num_threads' |
ftbfs, sid, trixie |
|
1088427 |
orthanc-dicomweb: move from twitter-bootstrap{3,4} to bootstrap-html (v5) |
upstream |
|
1085786 |
porechop: Python SyntaxWarning |
|
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1085789 |
presto: Python SyntaxWarning |
|
|
1084632 |
python-cgecore: removal of Python standard libraries in Python 3.13 |
sid, trixie |
1085895 |
python-cgecore: Python SyntaxWarning |
|
|
1083626 |
python-depinfo: (build-)depends on deprecated module python3-pkg-resources |
sid, trixie |
|
1089096 |
python-pbcore: please make the build reproducible |
patch |
1090155 |
python-pbcore: FTBFS: ERROR: Invalid value `None` in intersphinx_mapping['http://docs.python.org/']. Expected a two-element tuple or list. |
ftbfs |
|
1079359 |
SyntaxWarning: invalid escape sequence '\[' |
newcomer, upstream |
1083698 |
python-pyvcf: (build-)depends on deprecated module python3-pkg-resources |
sid, trixie |
|
1088112 |
python-tornado: CVE-2024-52804 |
security, upstream |
|
994423 |
pytorch: Baseline violation on armhf |
bookworm, bullseye, experimental, ftbfs, sid, trixie |
1056388 |
FTBFS with fmtlib 10 |
fixed-upstream, ftbfs |
1060097 |
pytorch: FBFS: /<<PKGBUILDDIR>>/aten/src/ATen/native/quantized/cpu/qlinear_prepack.cpp:249:103: error: cannot convert âdnnl::memory::data_typeâ to âconst ideep::dims&â {aka âconst std::vector<long int>&â} |
ftbfs |
1070379 |
pytorch: CVE-2024-31580 CVE-2024-31583 CVE-2024-31584 |
security, upstream |
1086773 |
Please drop dependency on python3-astunparse |
|
|
1087041 |
readucks: Python SyntaxWarning |
|
|
1087456 |
samtools: autopkgtest regression with htslib 1.21 |
|
|
1087373 |
seqan3: FTBFS: Some parallel tests fail on single-cpu systems |
ftbfs |
|
1087554 |
seqkit: FTBFS: undefined: decor.DidentRight |
ftbfs, sid, trixie |
|
1088545 |
simde: Cherry-pick LSX support from simde upstream |
ftbfs, patch |
|
976523 |
spades: FTBFS: jemalloc_internal.h:292:6: error: #error "No LG_QUANTUM definition for architecture; specify via CPPFLAGS" |
bookworm, bullseye, ftbfs, sid, trixie |
1087093 |
spades: Python SyntaxWarning |
|
|
1075545 |
sumaclust: ftbfs with GCC-14 |
ftbfs, sid, trixie, upstream |
|
1035857 |
texlive-fonts-extra: broken font symlinks for junicode |
bookworm-ignore |
|
1049071 |
tombo: Fails to build source after successful build |
ftbfs, sid, trixie |
1083801 |
tombo: (build-)depends on deprecated module python3-pkg-resources |
sid, trixie |
1087117 |
tombo: Python SyntaxWarning |
|
|
1087155 |
umis: Python SyntaxWarning |
pending |
|
1087156 |
uncalled: Python SyntaxWarning |
|
|
1048635 |
unicycler: Fails to build source after successful build |
ftbfs, sid, trixie |
1087157 |
unicycler: Python SyntaxWarning |
|
|
1013061 |
vg: ftbfs with GCC-12 |
bookworm, ftbfs, sid, trixie |
1043312 |
vg: Replace transitional bsdmainutils |
|
1084554 |
vg: removal of Python standard libraries in Python 3.13 |
experimental, sid, trixie |
|
955965 |
workrave: Depends on deprecated dbus-glib |
bookworm, bullseye, sid |
|
1087194 |
yanosim: Python SyntaxWarning |
|
|