Summary
Bugs of task
bio
Total bugs:
325
Open bugs:
225
Fixed bugs:
100
Links to other tasks
Legend
| Severity | Dependent | Suggested |
|---|
| critical |
0 |
0 |
| grave |
0 |
0 |
| serious |
24 |
15 |
| important |
28 |
10 |
| normal |
53 |
25 |
| minor |
34 |
6 |
| wishlist |
24 |
6 |
|
Summary bugs page of task Biology
Immediately looking into bugs of the dependencies of this task is advised (2000)*
Open bugs in dependent packages
24 serious, 28 important, 53 normal, 34 minor, 24 wishlist
|
|
| 920282 |
abyss fails to build on hurd - googletest EXPECT_DEATH |
|
|
|
| 1066334 |
acedb: FTBFS: acein.c:2045:15: error: implicit declaration of function âadd_historyâ [-Werror=implicit-function-declaration] |
ftbfs, help, sid, trixie |
|
|
| 1067631 |
src:altree: autopkgtest timeouts on armel, armhf and ppc64el |
|
|
|
| 1012893 |
anfo: ftbfs with GCC-12 |
bookworm, ftbfs, help, sid, trixie |
| 1061888 |
anfo: NMU diff for 64-bit time_t transition |
patch |
|
|
| 1040385 |
libball1.5-data: broken symlink: /usr/share/BALL-1.5/BALLView/html -> ../../doc/libball1.5-data/BALLView/html |
|
| 1060741 |
ball: Please port from sip4 to sip6 |
help |
|
|
| 865130 |
reapr FTBFS on big endian: Error sampling from files '00.Sample/fragCov.gz', '00.assembly.fa.gc.gz' |
ftbfs, upstream |
|
|
| 1043686 |
beads: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1032034 |
beagle: broken package on non arm64/amd64 architectures |
wontfix |
|
|
| 1025830 |
beauti2 fails to start |
help |
|
|
| 1025424 |
beast-mcmc: please enable autopkgtest |
help |
|
|
| 1085363 |
bioxtasraw: Python SyntaxWarning |
|
| 1090093 |
bioxtasraw: FTBFS: ModuleNotFoundError: No module named 'six' |
ftbfs |
|
|
| 1035121 |
bitseq: please add autopkgtests (to add coverage for python3-numpy) |
|
|
|
| 1022772 |
btllib: fails to build on 32-bit archs |
wontfix |
| 1032358 |
btllib: Depends on libsdsl-dev, breaking installability when not needed |
patch, pending |
| 1058455 |
btllib: add build support for loongarch64 |
patch |
|
|
| 1032036 |
chromhmm: broken package on non arm64/amd64 architectures |
wontfix |
|
|
| 1072286 |
coot: add autopkgtest for coot executable |
patch |
| 1072618 |
coot: layla fails to start unless LD_LIBRARY_PATH is specified |
fixed-upstream |
| 1080574 |
Missing Build-Depends on python3-setuptools |
sid, trixie |
| 1085529 |
coot: Python SyntaxWarning |
|
|
|
| 1035182 |
cutesv: please add autopkgtests (to add coverage for python3-numpy) |
|
|
|
| 982869 |
datamash FTBFS on !x86 32bit: FAIL: tests/decorate-errors |
ftbfs, upstream |
| 1044977 |
datamash: Fails to build source after successful build |
ftbfs, sid, trixie |
| 1057439 |
datamash: "antimode" returns lowest, instead of least common, value |
|
|
|
| 903886 |
dawg: Test suite fails |
upstream |
|
|
| 862118 |
ea-utils: New upstream version available |
|
|
|
| 682042 |
emboss-data: ships bulky taxonomy and gene ontology data |
|
| 986043 |
emboss: uses media types that are not registered |
|
| 1069098 |
emboss: all executables segfault on s390x |
bookworm, bullseye, sid, trixie |
| 1069142 |
emboss: build time testsuite is failing silently |
|
|
|
| 1088492 |
python3-emperor-doc: move from twitter-bootstrap{3,4} to bootstrap-html (v5) |
upstream |
|
|
| 1087184 |
examl: fails to run with tight cores count |
|
|
|
| 1067271 |
freebayes: FTBFS: dh_auto_test: error: cd build && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 MESON_TESTTHREADS=8 meson test -v --timeout-multiplier 100 returned exit code 5 |
ftbfs |
|
|
| 750139 |
gamgi: Conflicting return types of function gamgi_engine_iarray_push |
upstream |
| 967366 |
gamgi: depends on deprecated GTK 2 |
|
| 1044244 |
gamgi: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 715937 |
[Mayhem] Bug report on garlic: garlic crashes with exit status 139 |
|
| 749656 |
garlic: Conflicting declarations of function BlurMainWindow_ to cause undefined behaviour |
|
|
|
| 929564 |
gatb-core-testdata: broken symlink: /usr/share/doc/gatb-core/test/gatb-core-cppunit -> ../../../../lib/gatb-core/gatb-core-cppunit |
|
| 983926 |
gatb-core: ftbfs with -march=x86-64-v2 |
|
|
|
| 1039206 |
gbrowse: ships sysv-init script without systemd unit |
|
|
|
| 967379 |
gdpc: depends on deprecated GTK 2 |
wontfix |
| 982103 |
gdpc: autopkgtest failure on s390x |
|
|
|
| 732691 |
Pressing "alignment or Ctrl+G" only results in a dialog with a cancel button |
upstream |
|
|
| 967392 |
ghemical: depends on deprecated GTK 2 |
|
| 967865 |
ghemical: depends on deprecated libglade2 |
sid, trixie |
| 996006 |
ghemical: Segmentation fault when starting |
|
| 1066986 |
ghemical: FTBFS: /usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/13/../../../x86_64-linux-gnu/libghemical.so: undefined reference to `sc::RenderedBallMolecule::RenderedBallMolecule(sc::Ref<sc::KeyVal> const&)' |
ftbfs, sid, trixie |
| 1089786 |
ghemical: uninstallable since transition to openmpi version 5 |
|
|
|
| 644397 |
Provide runtime detection for CPU SIMD capabilities |
upstream |
| 983942 |
gromacs: ftbfs with -march=x86-64-v3 |
|
|
|
| 1053499 |
hilive: flaky autopkgtest on several archs: segfault |
upstream |
|
|
| 958244 |
Use system libinih-dev |
|
| 986193 |
hinge: no autopkgtest available yet |
newcomer |
| 1035178 |
hinge: please add autopkgtests (to add coverage for python3-numpy) |
|
| 1036500 |
hinge: please add autopkgtests (to add coverage for python3-matplotlib) |
|
|
|
| 1048028 |
hisat2: Fails to build source after successful build |
ftbfs, sid, trixie |
| 1076524 |
hisat2: autopkgtest uses absurd amount of memory on s390x |
|
|
|
| 1021557 |
jellyfish: Performance regression in 2.3.0 (orders of magnitude for some inputs) |
upstream |
|
|
| 875328 |
jellyfish1: FTBFS: __sync_val_compare_and_swap_8 undefined |
upstream, wontfix |
| 1045535 |
jellyfish1: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 872418 |
jmol: Weblinks in Help do not work |
|
|
|
| 1047324 |
kallisto: Fails to build source after successful build |
ftbfs, sid, trixie |
| 1057131 |
kallisto: add support for loongarch64 in d/control |
patch, pending |
|
|
| 1082721 |
khmer: FTBFS: failing tests |
ftbfs |
| 1085660 |
khmer: Python SyntaxWarning |
|
|
|
| 1081273 |
meryl: Meryl should be packaged separately from new upstream location |
|
|
|
| 1009159 |
kmerresistance: Add autopkgtest |
newcomer |
|
|
| 1048396 |
last-align: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1075199 |
libpwiz: ftbfs with GCC-14 |
ftbfs, sid, trixie |
|
|
| 1073098 |
math-numeric-tower-clojure: build-depends on markdown |
pending |
| 1074044 |
libvcflib: Improve support for loongarch64 |
patch, pending |
|
|
| 967603 |
ltrsift: depends on deprecated GTK 2 |
upstream, wontfix |
| 1048669 |
ltrsift: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1047978 |
lumpy-sv: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1045227 |
massxpert: Fails to build source after successful build |
ftbfs, sid, trixie |
| 1084296 |
massxpert: FTBFS: rror: static assertion failed: No Q_OBJECT in the class passed to QObject::findChildren |
ftbfs, sid, trixie |
|
|
| 1084295 |
massxpert2: FTBFS: error: static assertion failed: No Q_OBJECT in the class passed to QObject::findChildren |
ftbfs, patch, pending |
|
|
| 1088028 |
megahit: consider unembedding parallel-hashmap |
|
|
|
| 1048833 |
melting: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1035175 |
metaphlan: please add autopkgtests (to add coverage for python3-numpy) |
|
|
|
| 1035188 |
microbegps: please add autopkgtests (to add coverage for python3-numpy) |
|
|
|
| 1066525 |
mlv-smile: FTBFS: src/allocateurs.c:45:39: error: implicit declaration of function âgetpagesizeâ [-Werror=implicit-function-declaration] |
ftbfs, pending, sid, trixie |
|
|
| 1088472 |
multiqc: move from twitter-bootstrap{3,4} to bootstrap-html (v5) |
upstream |
|
|
| 956850 |
ncbi-blast+: Please provide /usr/bin/legacy_blast.pl |
|
| 984871 |
ncbi-blast+: Missing headers for shared libraries |
|
| 1010110 |
ncbi-blast+: terminate called after throwing an instance of 'ncbi::CIO_Exception' |
wontfix |
| 1077777 |
ncbi-blast+: makeblastdb yields broken DBs on s390x (BE generally?) |
upstream |
| 1080479 |
ncbi-blast+: failure to create blastdb v5 on riscv64 |
|
|
|
| 1048966 |
ncbi-igblast: Fails to build source after successful build |
ftbfs, sid, trixie |
| 1068442 |
igblast: Package igblast does not contain binary for igblast |
help |
|
|
| 225651 |
ncbi-tools-x11: want Cn3D++ |
|
|
|
| 1049529 |
norsnet: Fails to build binary packages again after successful build |
ftbfs, sid, trixie |
|
|
| 1025370 |
ntcard: ftbfs with nthash 2.3.0 |
ftbfs, upstream |
|
|
| 1047870 |
obitools: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1068052 |
openms: FTBFS on armel,armhf (error: âQOpenGLFunctions_2_0â does not name a type) |
ftbfs |
|
|
| 1069488 |
parsinsert: FTBFS on armhf: make[1]: *** [debian/rules:30: override_dh_auto_test] Error 1 |
confirmed, ftbfs, sid, trixie |
|
|
| 1047303 |
plast: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1048822 |
plink2: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1074546 |
FTBFS with OCaml 5.2.0 (Uses C functions without caml_ prefix) |
ftbfs |
|
|
| 1078584 |
prime-phylo fails to build with mpi-defaults 1.17 on armhf |
wontfix |
|
|
| 1042769 |
provean: incompatible with cd-hit >= 4.8.1-4 |
sid, trixie |
|
|
| 1048520 |
psortb: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 709306 |
pymol: Crashes when running within xrdp/vnc (no 3D support) |
|
| 765794 |
Race condition when running scripts in "stdin" mode |
|
| 783653 |
pymol: Segmentation fault immediately after loading pdb |
|
| 1080880 |
Missing Build-Depends on python3-setuptools |
sid, trixie |
| 1084571 |
pymol: removal of Python standard libraries in Python 3.13 |
patch |
|
|
| 1058479 |
python-cogent: please (temporarily) drop python3-numba dependencies |
wontfix |
| 1090269 |
python-cogent: FTBFS: E ImportError: Numba could not be imported. |
ftbfs |
|
|
| 1085900 |
python-csb: Python SyntaxWarning |
pending |
|
|
| 1090283 |
python-pybedtools: FTBFS: NameError: name 'iterator' is not defined |
ftbfs |
|
|
| 1036374 |
[INTL:es] Spanish translation of qcumber debconf template |
l10n, patch |
| 1036506 |
qcumber: please add autopkgtests (to add coverage for python3-matplotlib) |
|
| 1049117 |
qcumber: Fails to build source after successful build |
ftbfs, sid, trixie |
| 1068856 |
[INTL:sv] Swedish strings for qcumber debconf |
l10n, patch |
| 1088515 |
qcumber: move from twitter-bootstrap{3,4} to bootstrap-html (v5) |
upstream |
|
|
| 1076314 |
qiime hard-codes python 3.11 without depending on it |
pending, sid, trixie |
| 1084668 |
qiime: removal of Python standard libraries in Python 3.13 |
fixed-upstream, pending |
|
|
| 642084 |
qutemol: Cannot start the program |
|
| 939033 |
qutemol: Uses GifQuantizeBuffer - stops working with newer giflib |
|
|
|
| 1047092 |
rambo-k: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 909766 |
Use Debian packaged spdlog instead of code copy of old version |
help, upstream |
| 976588 |
rapmap: FTBFS on arm64 (when trying to build arch:all) |
bookworm, bullseye, ftbfs, sid, trixie |
|
|
| 1085689 |
r-bioc-mofa: Python SyntaxWarning |
|
|
|
| 1081161 |
r-cran-sdmtools: removed from CRAN repository |
|
|
|
| 1084108 |
r-cran-spp: removed from CRAN repository |
|
|
|
| 1081175 |
r-cran-tcr: removed from CRAN repository |
|
|
|
| 1045897 |
reprof: Fails to build source after successful build |
ftbfs, sid, trixie |
| 1049597 |
reprof: Fails to build binary packages again after successful build |
ftbfs, sid, trixie |
|
|
| 1088027 |
salmon: consider unembedding parallel-hashmap |
|
|
|
| 1015654 |
sambamba: ftbfs with LTO (link time optimization) enabled |
sid, trixie |
|
|
| 917851 |
seqan2 2.4.0+dfsg-9: FTBFS, alignment problem |
ftbfs |
| 1047218 |
seqan2: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1049489 |
seqprep: Fails to build binary packages again after successful build |
ftbfs, sid, trixie |
|
|
| 967743 |
seqtools: depends on deprecated GTK 2 |
|
| 1047310 |
seqtools: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 848589 |
snap-aligner: Build requires 188 GB of memory (fortunately not used, just allocated) |
|
|
|
| 1072346 |
sortmerna: please update autopkgtest |
newcomer |
|
|
| 1086015 |
build for all supported python3 |
|
| 1088026 |
spades: consider unembedding parallel-hashmap |
|
|
|
| 1084404 |
sra-sdk: move from fuse to fuse3 |
|
| 1087096 |
sra-sdk: Python SyntaxWarning |
patch, pending |
|
|
| 1048111 |
surankco: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 956848 |
t-coffee: should use "example" blastpgp.pl |
|
|
|
| 1083799 |
tnseq-transit: (build-)depends on deprecated module python3-pkg-resources |
sid, trixie |
|
|
| 1073358 |
toil: FTBFS: ModuleNotFoundError: No module named 'boto' |
ftbfs, sid, trixie |
| 1084681 |
toil: removal of Python standard libraries in Python 3.13 |
fixed-upstream |
| 1087116 |
toil: Python SyntaxWarning |
patch, pending |
|
|
| 846481 |
src:treeviewx: Please remove statically linked code copy of libncl |
|
|
|
| 981874 |
trinityrnaseq: flaky autopkgtest |
bookworm, bullseye, sid, trixie |
|
|
| 1047488 |
twopaco: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 980509 |
umap-learn: Binary package name should be python3-umap-learn |
pending |
| 1058489 |
umap-learn: please (temporarily) drop python3-numba dependencies |
|
| 1071816 |
umap-learn: FTBFS: E TypeError: exceptions must be derived from Warning, not <class 'NoneType'> |
ftbfs |
|
|
| 1089115 |
umis: tracebacks normally fatal during autopkgtest runs |
upstream |
|
|
| 976511 |
vg: FTBFS on arm64: configure: error: Could not find a version of the library! |
bookworm, bullseye, ftbfs, sid, trixie |
| 987184 |
vg -- excessive variants built, and not tested |
|
| 1015699 |
vg: ftbfs with LTO (link time optimization) enabled |
sid, trixie |
| 1089275 |
vg: FTBFS with make 4.4.1 |
ftbfs, sid, trixie |
Open bugs in suggested packages
15 serious, 10 important, 25 normal, 6 minor, 6 wishlist
|
|
| 1089541 |
override_dh_auto_build Error |
|
|
|
| 928076 |
bcbio: Workflows not ready for non-developers to depend on. |
|
| 1018312 |
bcbio: build-depends on python3-nose or uses it for autopkgtest |
sid, trixie |
|
|
| 1085412 |
catfishq: Python SyntaxWarning |
|
|
|
| 1030327 |
science-numericalcomputation: please stop recommending python3-theano as it is being removed |
|
| 1032638 |
please drop transitional package science-electronics from src:debian-science |
|
| 1055339 |
debian-science: please replace recommendation of src:dolfin by src:fenics-dolfinx |
|
|
|
| 1081508 |
getdata: homepage defunct |
|
|
|
| 638753 |
libhdf5-serial-1.8.7: threadsafe memory leaks |
moreinfo |
| 715959 |
[Mayhem] Bug report on hdf5-tools: gif2h5 crashes with exit status 139 |
|
| 716008 |
[Mayhem] Bug report on hdf5-tools: h5copy crashes with exit status 139 |
|
| 716010 |
[Mayhem] Bug report on hdf5-tools: h5diff crashes with exit status 139 |
|
| 716011 |
[Mayhem] Bug report on hdf5-tools: h5dump crashes with exit status 139 |
|
| 716012 |
[Mayhem] Bug report on hdf5-tools: h5import crashes with exit status 139 |
|
| 740613 |
libhdf5-7: Please include support for compression with libaec |
|
| 748587 |
Duplicate and conflicting definitions of variable FILENAME |
upstream |
| 839784 |
libhdf5-dev: pkg-config file references ONLY the C library |
|
| 915807 |
hdf5: CVE-2017-17507 |
security, upstream |
| 958174 |
hdf5: please add the hdf5plugins |
|
| 968559 |
libhdf5-openmpi-dev: hdf5-mpi.pc alternative sometimes goes missing |
moreinfo |
| 1023446 |
libhdf5-openmpi-dev: h5pcc configured as static build |
|
| 1023820 |
hdf5: Dependencies not tight enough |
|
| 1031726 |
hdf5: CVE-2022-26061 CVE-2022-25972 CVE-2022-25942 |
security, upstream |
| 1034807 |
hdf5: CVE-2018-11205 |
security, upstream |
| 1034838 |
hdf5: CVE-2019-8396 CVE-2019-8398 |
security |
| 1040862 |
hdf5: S3 VFD pulls in networking dependencies (libcurl), please package it as a VFD plugin |
|
| 1052250 |
pkg-config file incorrect for static linking |
|
| 1063856 |
hdf5: new upstream release |
|
| 1067758 |
Please provide a nojava build profile |
|
| 1067789 |
hdf5: diff for NMU version 1.10.10+repack-3.2 |
patch, pending |
| 1067950 |
hdf5: diff for NMU version 1.10.10+repack-3.3 |
patch, pending |
|
|
| 1063953 |
intake: autopkgtest regression with pytest 8 |
|
| 1064752 |
intake: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.12 3.11" returned exit code 13 |
ftbfs, sid, trixie |
| 1067969 |
python3-intake: Please replace python3-appdirs dependency with platformdirs |
patch, sid, trixie |
| 1088416 |
intake: move from twitter-bootstrap{3,4} to bootstrap-html (v5) |
upstream |
|
|
| 1067957 |
FTBFS: error: call of overloaded â__gmp_expr(__time64_t&)â is ambiguous |
ftbfs, sid, trixie |
|
|
| 1082368 |
FTBFS: TestIntegration.testIntegration: AssertionError: 1 != 0 |
confirmed, ftbfs |
|
|
| 1047039 |
pyrle: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1075928 |
python-anndata: tests fail with scipy 1.13 |
|
|
|
| 1058482 |
python-loompy: please (temporarily) drop python3-numba dependencies |
|
| 1083659 |
python-loompy: (build-)depends on deprecated module python3-pkg-resources |
sid, trixie |
| 1085932 |
python-loompy: Python SyntaxWarning |
|
| 1090279 |
python-loompy: FTBFS: E ImportError: cannot import name '_typeconv' from 'numba.core.typeconv' |
ftbfs |
|
|
| 1046648 |
python-ncls: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1087457 |
python3-pysam: autopkgtest regression with htslib 1.21 |
fixed-upstream, upstream |
|
|
| 1035277 |
python-seqcluster: please add autopkgtests (to add coverage for python3-numpy) |
|
|
|
| 1076318 |
q2-alignment hard-codes python 3.11 without depending on it |
sid, trixie |
|
|
| 1076080 |
q2cli: FTBFS in sid (python3.12) |
ftbfs |
|
|
| 1076315 |
q2-demux hard-codes python 3.11 without depending on it |
sid, trixie |
|
|
| 1071882 |
q2-feature-classifier: FTBFS: unsatisfiable build-dependencies |
ftbfs |
|
|
| 1076317 |
q2-phylogeny hard-codes python 3.11 without depending on it |
|
|
|
| 1076914 |
q2-quality-control: FTBFS: rm: cannot remove '/<<PKGBUILDDIR>>/debian/*/usr/lib/python3*/dist-packages/run_decontam.R': No such file or directory |
ftbfs |
|
|
| 1088514 |
q2templates: move from twitter-bootstrap{3,4} to bootstrap-html (v5) |
upstream |
|
|
| 1065333 |
q2-types: test data heavily outweighs actual code |
|
| 1076316 |
q2-types hard-codes python 3.11 without depending on it |
sid, trixie |
|
|
| 1083247 |
r-bioc-org.hs.eg.db: homepage defunct, standardize |
|
|
|
| 1036681 |
relion-cuda: FTBFS with CUDA 12: nvcc fatal : Value 'sm_35' is not defined for option 'gpu-architecture' |
ftbfs, sid, trixie |
| 1040128 |
relion-cuda: FTBFS with cub 2.0.1: error: function "cub::Debug" has already been defined |
ftbfs, sid, trixie |
|
|
| 1049268 |
resfinder-db: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 986200 |
sift: Please provide autopkgtest |
newcomer |
| 987606 |
sift: does not autobuild on buildds |
|
| 1066998 |
sift: FTBFS with -Werror=implicit-function-declaration |
ftbfs, patch, sid, trixie |
Done bugs
|
|
| 1088626 |
aevol: build-deps on libopenmpi-dev on 32-bit architectures |
sid, trixie |
|
|
| 1087997 |
ampliconnoise: build-deps on libopenmpi-dev, which is no longer available on 32-bit arches |
|
|
|
| 1085332 |
ariba: Python SyntaxWarning |
|
|
|
| 1043995 |
baitfisher: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1043854 |
beagle: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1043640 |
beast-mcmc: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1090091 |
bedops: FTBFS: ERROR: Invalid value `None` in intersphinx_mapping['http://docs.python.org/']. Expected a two-element tuple or list. |
ftbfs |
|
|
| 1067374 |
blasr: autopkgtest failure: core dump |
ftbfs, help, sid, trixie |
|
|
| 1085372 |
busco: Python SyntaxWarning |
|
|
|
| 1085416 |
changeo: Python SyntaxWarning |
|
|
|
| 1085417 |
circlator: Python SyntaxWarning |
|
|
|
| 1043837 |
concavity: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1085542 |
discosnp: Python SyntaxWarning |
|
|
|
| 1085573 |
fastaq: Python SyntaxWarning |
|
|
|
| 1044647 |
fermi-lite: Fails to build source after successful build |
ftbfs, sid, trixie |
| 1049564 |
fermi-lite: Fails to build binary packages again after successful build |
ftbfs, sid, trixie |
|
|
| 1044789 |
gemma: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1086565 |
genomicsdb: FTBFS with fmtlib 10 |
ftbfs |
|
|
| 1033703 |
gffread: autopkgtest regression: test dependency not in testing |
bookworm-ignore |
|
|
| 1085608 |
ghmm: Python SyntaxWarning |
|
|
|
| 1081315 |
glam2: homepage defunct |
|
|
|
| 1045023 |
grabix: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1044305 |
gwama: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1087988 |
hdf5: incomplete openmpi removal on 32-bit architectures |
|
|
|
| 1085638 |
htseq: Python SyntaxWarning |
|
|
|
| 1075071 |
hts-nim-tools: ftbfs with GCC-14 |
ftbfs, sid, trixie |
|
|
| 1045517 |
infernal: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1045547 |
ipig: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1085655 |
iva: Python SyntaxWarning |
|
|
|
| 1087589 |
FTBFS on ppc64el: [ FAILED ] CooperativePool/CooperativePoolTest.Ints/3, where GetParam() = 4 |
ftbfs |
|
|
| 1085666 |
lefse: Python SyntaxWarning |
|
|
|
| 1045341 |
librg-utils-perl: Fails to build source after successful build |
ftbfs, sid, trixie |
| 1049488 |
librg-utils-perl: Fails to build binary packages again after successful build |
ftbfs, sid, trixie |
|
|
| 1015525 |
libssw: ftbfs with LTO (link time optimization) enabled |
experimental, sid, trixie |
|
|
| 1090794 |
src:loki: fails to migrate to testing for too long |
sid, trixie |
|
|
| 1086362 |
macromoleculebuilder: FTBFS: /usr/bin/ld: libMMB.so.4.0: undefined reference to `gzerror' |
fixed-upstream, ftbfs |
|
|
| 1085723 |
microbegps: Python SyntaxWarning |
|
|
|
| 1085726 |
mirtop: Python SyntaxWarning |
|
|
|
| 1075288 |
mosdepth: ftbfs with GCC-14 |
ftbfs, sid, trixie |
|
|
| 1086908 |
murasaki: depends on openmpi on 32-bit architectures |
sid, trixie |
|
|
| 1045898 |
nanook: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1085733 |
nanosv: Python SyntaxWarning |
|
|
|
| 1045354 |
nxtrim: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1085745 |
obitools: Python SyntaxWarning |
|
|
|
| 964082 |
parsinsert fails it's tests when built with -O2 |
bookworm, bullseye, sid, trixie |
|
|
| 1085772 |
pbsuite: Python SyntaxWarning |
|
|
|
| 1086912 |
phyml: depends on openmpi on 32-bit architectures |
sid, trixie |
|
|
| 1085786 |
porechop: Python SyntaxWarning |
|
|
|
| 1085789 |
presto: Python SyntaxWarning |
|
|
|
| 1045454 |
primer3: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1046067 |
proalign: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1088316 |
python3-pyfastx: missing rebuild after improper python3 dependency declaration cause augur to ftbfs |
ftbfs |
| 1088355 |
pyfastx: missing versioned dependencies on python3 |
|
|
|
| 1084632 |
python-cgecore: removal of Python standard libraries in Python 3.13 |
sid, trixie |
| 1085895 |
python-cgecore: Python SyntaxWarning |
|
|
|
| 1083625 |
python-dendropy: (build-)depends on deprecated module python3-pkg-resources |
sid, trixie |
|
|
| 1085915 |
python-geneimpacts: Python SyntaxWarning |
|
|
|
| 1054591 |
python3-pyflow: ${VERSION} not expanded in package metadata, causing PEP-440 validation failures |
|
| 1080766 |
Missing Build-Depends on python3-setuptools |
sid, trixie, wontfix |
| 1081243 |
python3-pyflow: helloWorld and other examples not runnable, possibly since python2 dropped |
upstream, wontfix |
|
|
| 1079359 |
SyntaxWarning: invalid escape sequence '\[' |
newcomer, upstream |
| 1083698 |
python-pyvcf: (build-)depends on deprecated module python3-pkg-resources |
sid, trixie |
|
|
| 1087042 |
rambo-k: Python SyntaxWarning |
|
|
|
| 1085491 |
ray FTCBFS: uses mpicxx |
patch |
|
|
| 1034852 |
r-bioc-annotationhub: autopkgtest regression: download failed |
bookworm-ignore |
|
|
| 1088612 |
src:r-bioc-genomicranges: fails to migrate to testing for too long: triggers autopkgtest failure in r-bioc-variantannotation |
sid, trixie |
|
|
| 1033853 |
r-bioc-megadepth: autopkgtest regression: different output |
bookworm-ignore |
|
|
| 1025045 |
r-bioc-structuralvariantannotation: Test failures in autopkgtest |
bookworm-ignore, upstream |
|
|
| 1088634 |
src:r-cran-amap: fails to migrate to testing for too long: autopkgtest failure on i386 |
sid, trixie |
|
|
| 1087041 |
readucks: Python SyntaxWarning |
|
|
|
| 1045461 |
reapr: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1086914 |
relion: depends on openmpi on 32-bit architectures |
sid, trixie |
|
|
| 1047005 |
roary: Fails to build source after successful build |
ftbfs, sid, trixie |
| 1049576 |
roary: Fails to build binary packages again after successful build |
ftbfs, sid, trixie |
|
|
| 1087456 |
samtools: autopkgtest regression with htslib 1.21 |
|
|
|
| 1087074 |
scoary: Python SyntaxWarning |
|
|
|
| 1087554 |
seqkit: FTBFS: undefined: decor.DidentRight |
ftbfs, sid, trixie |
|
|
| 1089272 |
snippy: FTBFS with make 4.4.1 |
ftbfs, sid, trixie |
|
|
| 1087092 |
sortmerna: Python SyntaxWarning |
|
|
|
| 976523 |
spades: FTBFS: jemalloc_internal.h:292:6: error: #error "No LG_QUANTUM definition for architecture; specify via CPPFLAGS" |
bookworm, bullseye, ftbfs, sid, trixie |
| 1087093 |
spades: Python SyntaxWarning |
|
|
|
| 1087097 |
srst2: Python SyntaxWarning |
|
|
|
| 1075545 |
sumaclust: ftbfs with GCC-14 |
ftbfs, sid, trixie, upstream |
|
|
| 1080069 |
sweed: A suspicious integer overflow to buffer overflow in 'SweeD_Input.c' |
|
|
|
| 1049071 |
tombo: Fails to build source after successful build |
ftbfs, sid, trixie |
| 1083801 |
tombo: (build-)depends on deprecated module python3-pkg-resources |
sid, trixie |
| 1087117 |
tombo: Python SyntaxWarning |
|
|
|
| 1045986 |
tortoize: Fails to build source after successful build |
ftbfs, sid, trixie |
| 1088633 |
src:tortoize: fails to migrate to testing for too long: FTBFS on s390x |
ftbfs, sid, trixie |
|
|
| 1049170 |
tree-puzzle: Fails to build source after successful build |
ftbfs, sid, trixie |
| 1082806 |
tree-puzzle: please make the build reproducible |
patch |
| 1086203 |
src:tree-puzzle: fails to migrate to testing for too long |
sid, trixie |
|
|
| 1087155 |
umis: Python SyntaxWarning |
pending |
|
|
| 1087156 |
uncalled: Python SyntaxWarning |
|
|
|
| 1048635 |
unicycler: Fails to build source after successful build |
ftbfs, sid, trixie |
| 1087157 |
unicycler: Python SyntaxWarning |
|
|
|
| 1013061 |
vg: ftbfs with GCC-12 |
bookworm, ftbfs, sid, trixie |
| 1043312 |
vg: Replace transitional bsdmainutils |
|
| 1084554 |
vg: removal of Python standard libraries in Python 3.13 |
experimental, sid, trixie |
|
|
| 1087194 |
yanosim: Python SyntaxWarning |
|
|
