Summary
Bugs of task
bio
Total bugs:
306
Open bugs:
262
Fixed bugs:
44
Links to other tasks
Legend
| Severity | Dependent | Suggested |
|---|
| critical |
0 |
0 |
| grave |
0 |
0 |
| serious |
20 |
15 |
| important |
86 |
4 |
| normal |
49 |
19 |
| minor |
30 |
6 |
| wishlist |
27 |
6 |
|
Summary bugs page of task Biology
Immediately looking into bugs of the dependencies of this task is advised (2654)*
Open bugs in dependent packages
20 serious, 86 important, 49 normal, 30 minor, 27 wishlist
|
|
| 920282 |
abyss fails to build on hurd - googletest EXPECT_DEATH |
|
|
|
| 1066334 |
acedb: FTBFS: acein.c:2045:15: error: implicit declaration of function âadd_historyâ [-Werror=implicit-function-declaration] |
ftbfs, help, sid, trixie |
|
|
| 1096281 |
aegean: ftbfs with GCC-15 |
forky, sid |
|
|
| 1067631 |
src:altree: autopkgtest timeouts on armel, armhf and ppc64el |
|
| 1096300 |
altree: ftbfs with GCC-15 |
forky, sid |
|
|
| 1096305 |
ampliconnoise: ftbfs with GCC-15 |
forky, sid |
|
|
| 1012893 |
anfo: ftbfs with GCC-12 |
bookworm, ftbfs, help, sid, trixie |
| 1061888 |
anfo: NMU diff for 64-bit time_t transition |
patch |
|
|
| 1094842 |
augur: Please update to latest upstream 28.0.0, released 2025-01-30 |
|
|
|
| 1096345 |
augustus: ftbfs with GCC-15 |
forky, sid |
|
|
| 1040385 |
libball1.5-data: broken symlink: /usr/share/BALL-1.5/BALLView/html -> ../../doc/libball1.5-data/BALLView/html |
|
| 1060741 |
ball: Please port from sip4 to sip6 |
help |
|
|
| 865130 |
reapr FTBFS on big endian: Error sampling from files '00.Sample/fragCov.gz', '00.assembly.fa.gc.gz' |
ftbfs, upstream |
|
|
| 1043686 |
beads: Fails to build source after successful build |
ftbfs, sid, trixie |
| 1096362 |
beads: ftbfs with GCC-15 |
forky, sid |
|
|
| 1032034 |
beagle: broken package on non arm64/amd64 architectures |
wontfix |
|
|
| 1025830 |
beauti2 fails to start |
help |
|
|
| 1025424 |
beast-mcmc: please enable autopkgtest |
help |
|
|
| 1096367 |
bifrost: ftbfs with GCC-15 |
forky, sid |
|
|
| 1096372 |
biobambam2: ftbfs with GCC-15 |
forky, sid |
|
|
| 1085363 |
bioxtasraw: Python SyntaxWarning |
|
|
|
| 1035121 |
bitseq: please add autopkgtests (to add coverage for python3-numpy) |
|
|
|
| 1022772 |
btllib: fails to build on 32-bit archs |
wontfix |
| 1032358 |
btllib: Depends on libsdsl-dev, breaking installability when not needed |
patch, pending |
| 1058455 |
btllib: add build support for loongarch64 |
patch |
|
|
| 1032036 |
chromhmm: broken package on non arm64/amd64 architectures |
wontfix |
|
|
| 1096450 |
coils: ftbfs with GCC-15 |
forky, sid |
|
|
| 1072286 |
coot: add autopkgtest for coot executable |
patch |
| 1072618 |
coot: layla fails to start unless LD_LIBRARY_PATH is specified |
fixed-upstream |
|
|
| 1035182 |
cutesv: please add autopkgtests (to add coverage for python3-numpy) |
|
|
|
| 982869 |
datamash FTBFS on !x86 32bit: FAIL: tests/decorate-errors |
ftbfs, upstream |
| 1044977 |
datamash: Fails to build source after successful build |
ftbfs, sid, trixie |
| 1057439 |
datamash: "antimode" returns lowest, instead of least common, value |
|
| 1096504 |
datamash: ftbfs with GCC-15 |
forky, sid |
|
|
| 903886 |
dawg: Test suite fails |
upstream |
|
|
| 1096554 |
dwgsim: ftbfs with GCC-15 |
forky, sid |
|
|
| 862118 |
ea-utils: New upstream version available |
|
|
|
| 682042 |
emboss-data: ships bulky taxonomy and gene ontology data |
|
| 986043 |
emboss: uses media types that are not registered |
|
| 1069098 |
emboss: all executables segfault on s390x |
bookworm, bullseye, sid, trixie |
| 1069142 |
emboss: build time testsuite is failing silently |
|
| 1096578 |
emboss: ftbfs with GCC-15 |
forky, sid |
|
|
| 1088492 |
python3-emperor-doc: move from twitter-bootstrap{3,4} to bootstrap-html (v5) |
upstream |
|
|
| 1087184 |
examl: fails to run with tight cores count |
|
|
|
| 1096607 |
fasta3: ftbfs with GCC-15 |
forky, sid |
|
|
| 1096609 |
fastdnaml: ftbfs with GCC-15 |
forky, sid |
|
|
| 1096612 |
fastlink: ftbfs with GCC-15 |
forky, sid |
|
|
| 1096651 |
freecontact: ftbfs with GCC-15 |
forky, sid |
|
|
| 750139 |
gamgi: Conflicting return types of function gamgi_engine_iarray_push |
upstream |
| 967366 |
gamgi: depends on deprecated GTK 2 |
|
| 1044244 |
gamgi: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 715937 |
[Mayhem] Bug report on garlic: garlic crashes with exit status 139 |
|
| 749656 |
garlic: Conflicting declarations of function BlurMainWindow_ to cause undefined behaviour |
|
|
|
| 929564 |
gatb-core-testdata: broken symlink: /usr/share/doc/gatb-core/test/gatb-core-cppunit -> ../../../../lib/gatb-core/gatb-core-cppunit |
|
| 983926 |
gatb-core: ftbfs with -march=x86-64-v2 |
|
|
|
| 1039206 |
gbrowse: ships sysv-init script without systemd unit |
|
|
|
| 967379 |
gdpc: depends on deprecated GTK 2 |
wontfix |
| 982103 |
gdpc: autopkgtest failure on s390x |
|
|
|
| 1092841 |
genomicsdb: FTBFS with fmtlib 11.1 |
ftbfs |
|
|
| 732691 |
Pressing "alignment or Ctrl+G" only results in a dialog with a cancel button |
upstream |
|
|
| 967392 |
ghemical: depends on deprecated GTK 2 |
|
| 967865 |
ghemical: depends on deprecated libglade2 |
sid, trixie |
| 996006 |
ghemical: Segmentation fault when starting |
|
| 1066986 |
ghemical: FTBFS: /usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/13/../../../x86_64-linux-gnu/libghemical.so: undefined reference to `sc::RenderedBallMolecule::RenderedBallMolecule(sc::Ref<sc::KeyVal> const&)' |
ftbfs, sid, trixie |
| 1089786 |
ghemical: uninstallable since transition to openmpi version 5 |
|
|
|
| 1096727 |
gmap: ftbfs with GCC-15 |
forky, sid |
|
|
| 644397 |
Provide runtime detection for CPU SIMD capabilities |
upstream |
| 983942 |
gromacs: ftbfs with -march=x86-64-v3 |
|
|
|
| 1053499 |
hilive: flaky autopkgtest on several archs: segfault |
upstream |
|
|
| 958244 |
Use system libinih-dev |
|
| 986193 |
hinge: no autopkgtest available yet |
newcomer |
| 1035178 |
hinge: please add autopkgtests (to add coverage for python3-numpy) |
|
| 1036500 |
hinge: please add autopkgtests (to add coverage for python3-matplotlib) |
|
|
|
| 1048028 |
hisat2: Fails to build source after successful build |
ftbfs, sid, trixie |
| 1076524 |
hisat2: autopkgtest uses absurd amount of memory on s390x |
|
|
|
| 1096850 |
iqtree: ftbfs with GCC-15 |
forky, sid |
|
|
| 1021557 |
jellyfish: Performance regression in 2.3.0 (orders of magnitude for some inputs) |
upstream |
|
|
| 875328 |
jellyfish1: FTBFS: __sync_val_compare_and_swap_8 undefined |
upstream, wontfix |
|
|
| 1095078 |
jmodeltest: reduce the permissions on /var/log/jmodeltest |
|
|
|
| 872418 |
jmol: Weblinks in Help do not work |
|
|
|
| 1047324 |
kallisto: Fails to build source after successful build |
ftbfs, sid, trixie |
| 1057131 |
kallisto: add support for loongarch64 in d/control |
patch, pending |
|
|
| 1081273 |
meryl: Meryl should be packaged separately from new upstream location |
|
|
|
| 1009159 |
kmerresistance: Add autopkgtest |
newcomer |
|
|
| 1048396 |
last-align: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1097151 |
lastz: ftbfs with GCC-15 |
forky, sid |
|
|
| 1075199 |
libpwiz: ftbfs with GCC-14 |
ftbfs, sid, trixie |
|
|
| 967603 |
ltrsift: depends on deprecated GTK 2 |
upstream, wontfix |
| 1048669 |
ltrsift: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1097321 |
lucy: ftbfs with GCC-15 |
forky, sid |
|
|
| 1047978 |
lumpy-sv: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1097352 |
mafft: ftbfs with GCC-15 |
forky, sid |
|
|
| 1045227 |
massxpert: Fails to build source after successful build |
ftbfs, sid, trixie |
| 1084296 |
massxpert: FTBFS: rror: static assertion failed: No Q_OBJECT in the class passed to QObject::findChildren |
ftbfs, sid, trixie |
|
|
| 1097365 |
massxpert2: ftbfs with GCC-15 |
forky, sid |
|
|
| 1088028 |
megahit: consider unembedding parallel-hashmap |
|
|
|
| 1048833 |
melting: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1035175 |
metaphlan: please add autopkgtests (to add coverage for python3-numpy) |
|
|
|
| 1035188 |
microbegps: please add autopkgtests (to add coverage for python3-numpy) |
|
|
|
| 1097402 |
minexpert2: ftbfs with GCC-15 |
forky, sid |
|
|
| 1066525 |
mlv-smile: FTBFS: src/allocateurs.c:45:39: error: implicit declaration of function âgetpagesizeâ [-Werror=implicit-function-declaration] |
ftbfs, pending, sid, trixie |
|
|
| 1088472 |
multiqc: move from twitter-bootstrap{3,4} to bootstrap-html (v5) |
upstream |
|
|
| 1097430 |
nanopolish: ftbfs with GCC-15 |
forky, sid |
|
|
| 956850 |
ncbi-blast+: Please provide /usr/bin/legacy_blast.pl |
|
| 984871 |
ncbi-blast+: Missing headers for shared libraries |
|
| 1010110 |
ncbi-blast+: terminate called after throwing an instance of 'ncbi::CIO_Exception' |
wontfix |
| 1077777 |
ncbi-blast+: makeblastdb yields broken DBs on s390x (BE generally?) |
upstream |
| 1080479 |
ncbi-blast+: failure to create blastdb v5 on riscv64 |
|
| 1097434 |
ncbi-blast+: ftbfs with GCC-15 |
forky, sid |
|
|
| 1048966 |
ncbi-igblast: Fails to build source after successful build |
ftbfs, sid, trixie |
| 1068442 |
igblast: Package igblast does not contain binary for igblast |
help |
| 1097435 |
ncbi-igblast: ftbfs with GCC-15 |
forky, sid |
|
|
| 1097436 |
ncbi-seg: ftbfs with GCC-15 |
forky, sid |
|
|
| 225651 |
ncbi-tools-x11: want Cn3D++ |
|
|
|
| 1049529 |
norsnet: Fails to build binary packages again after successful build |
ftbfs, sid, trixie |
|
|
| 1025370 |
ntcard: ftbfs with nthash 2.3.0 |
ftbfs, upstream |
|
|
| 1047870 |
obitools: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1068052 |
openms: FTBFS on armel,armhf (error: âQOpenGLFunctions_2_0â does not name a type) |
ftbfs |
|
|
| 1097542 |
paml: ftbfs with GCC-15 |
forky, sid |
|
|
| 1069488 |
parsinsert: FTBFS on armhf: make[1]: *** [debian/rules:30: override_dh_auto_test] Error 1 |
confirmed, ftbfs, sid, trixie |
|
|
| 1091721 |
pbsuite: autopkgtest regression in testing |
confirmed |
|
|
| 1097575 |
phast: ftbfs with GCC-15 |
forky, sid |
|
|
| 1047303 |
plast: Fails to build source after successful build |
ftbfs, sid, trixie |
| 1097619 |
plast: ftbfs with GCC-15 |
forky, sid |
|
|
| 1097626 |
poa: ftbfs with GCC-15 |
forky, sid |
|
|
| 1074546 |
FTBFS with OCaml 5.2.0 (Uses C functions without caml_ prefix) |
ftbfs |
| 1093109 |
pplacer: FTBFS with OCaml 5.3.0 (error in C stubs) |
ftbfs |
|
|
| 1078584 |
prime-phylo fails to build with mpi-defaults 1.17 on armhf |
wontfix |
| 1097647 |
prime-phylo: ftbfs with GCC-15 |
forky, sid |
|
|
| 1097649 |
primer3: ftbfs with GCC-15 |
forky, sid |
|
|
| 1091575 |
probabel: FTBFS on i386: dh_auto_test: error: make -j8 check "TESTSUITEFLAGS=-j8 --verbose" VERBOSE=1 returned exit code 2 |
ftbfs, sid, trixie |
|
|
| 1042769 |
provean: incompatible with cd-hit >= 4.8.1-4 |
sid, trixie |
|
|
| 1048520 |
psortb: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 709306 |
pymol: Crashes when running within xrdp/vnc (no 3D support) |
|
| 765794 |
Race condition when running scripts in "stdin" mode |
|
| 783653 |
pymol: Segmentation fault immediately after loading pdb |
|
|
|
| 1058479 |
python-cogent: please (temporarily) drop python3-numba dependencies |
wontfix |
| 1090269 |
python-cogent: FTBFS: E ImportError: Numba could not be imported. |
ftbfs |
|
|
| 1085900 |
python-csb: Python SyntaxWarning |
pending |
|
|
| 1036374 |
[INTL:es] Spanish translation of qcumber debconf template |
l10n, patch |
| 1036506 |
qcumber: please add autopkgtests (to add coverage for python3-matplotlib) |
|
| 1049117 |
qcumber: Fails to build source after successful build |
ftbfs, sid, trixie |
| 1068856 |
[INTL:sv] Swedish strings for qcumber debconf |
l10n, patch |
| 1088515 |
qcumber: move from twitter-bootstrap{3,4} to bootstrap-html (v5) |
upstream |
|
|
| 1076314 |
qiime hard-codes python 3.11 without depending on it |
pending, sid, trixie |
| 1084668 |
qiime: removal of Python standard libraries in Python 3.13 |
fixed-upstream, pending |
|
|
| 642084 |
qutemol: Cannot start the program |
|
| 939033 |
qutemol: Uses GifQuantizeBuffer - stops working with newer giflib |
|
|
|
| 1097767 |
racon: ftbfs with GCC-15 |
forky, sid |
|
|
| 1047092 |
rambo-k: Fails to build source after successful build |
ftbfs, pending, sid, trixie |
|
|
| 909766 |
Use Debian packaged spdlog instead of code copy of old version |
help, upstream |
| 976588 |
rapmap: FTBFS on arm64 (when trying to build arch:all) |
bookworm, bullseye, ftbfs, sid, trixie |
| 1097770 |
rapmap: ftbfs with GCC-15 |
forky, sid |
|
|
| 1097771 |
rasmol: ftbfs with GCC-15 |
forky, sid |
|
|
| 1097773 |
raster3d: ftbfs with GCC-15 |
forky, sid |
|
|
| 1097774 |
raxml: ftbfs with GCC-15 |
forky, sid |
|
|
| 1097762 |
r-bioc-cner: ftbfs with GCC-15 |
forky, sid |
|
|
| 1085689 |
r-bioc-mofa: Python SyntaxWarning |
|
|
|
| 1097765 |
r-bioc-rtracklayer: ftbfs with GCC-15 |
forky, sid |
|
|
| 1081161 |
r-cran-sdmtools: removed from CRAN repository |
|
|
|
| 1084108 |
r-cran-spp: removed from CRAN repository |
|
|
|
| 1081175 |
r-cran-tcr: removed from CRAN repository |
|
|
|
| 1097779 |
readseq: ftbfs with GCC-15 |
forky, sid |
|
|
| 1097784 |
relion: ftbfs with GCC-15 |
forky, sid |
|
|
| 1097803 |
roguenarok: ftbfs with GCC-15 |
forky, sid |
|
|
| 1088027 |
salmon: consider unembedding parallel-hashmap |
|
| 1097838 |
salmon: ftbfs with GCC-15 |
forky, sid |
|
|
| 1015654 |
sambamba: ftbfs with LTO (link time optimization) enabled |
sid, trixie |
| 1095434 |
sambamba: rare segmentation fault makes nanosv autopkgtest flaky |
|
|
|
| 917851 |
seqan2 2.4.0+dfsg-9: FTBFS, alignment problem |
ftbfs |
| 1047218 |
seqan2: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1049489 |
seqprep: Fails to build binary packages again after successful build |
ftbfs, sid, trixie |
|
|
| 967743 |
seqtools: depends on deprecated GTK 2 |
|
| 1047310 |
seqtools: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1097885 |
sim4: ftbfs with GCC-15 |
forky, sid |
|
|
| 848589 |
snap-aligner: Build requires 188 GB of memory (fortunately not used, just allocated) |
|
|
|
| 1097906 |
soapaligner: ftbfs with GCC-15 |
forky, sid |
|
|
| 1097907 |
soapdenovo: ftbfs with GCC-15 |
forky, sid |
|
|
| 1097909 |
soapdenovo2: ftbfs with GCC-15 |
forky, sid |
|
|
| 1072346 |
sortmerna: please update autopkgtest |
newcomer |
| 1097910 |
sortmerna: ftbfs with GCC-15 |
forky, sid |
|
|
| 1086015 |
build for all supported python3 |
|
| 1088026 |
spades: consider unembedding parallel-hashmap |
|
| 1097913 |
spades: ftbfs with GCC-15 |
forky, sid |
|
|
| 1097922 |
spoa: ftbfs with GCC-15 |
forky, sid |
|
|
| 1084404 |
sra-sdk: move from fuse to fuse3 |
|
| 1087096 |
sra-sdk: Python SyntaxWarning |
patch, pending |
| 1097930 |
sra-sdk: ftbfs with GCC-15 |
forky, sid |
|
|
| 1097934 |
staden: ftbfs with GCC-15 |
forky, sid |
|
|
| 1048111 |
surankco: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1097956 |
sweed: ftbfs with GCC-15 |
forky, sid |
|
|
| 956848 |
t-coffee: should use "example" blastpgp.pl |
|
|
|
| 1097993 |
thesias: ftbfs with GCC-15 |
forky, sid |
|
|
| 1098008 |
tnseq-transit: ftbfs with GCC-15 |
forky, sid |
|
|
| 1073358 |
toil: FTBFS: ModuleNotFoundError: No module named 'boto' |
ftbfs, sid, trixie |
| 1084681 |
toil: removal of Python standard libraries in Python 3.13 |
fixed-upstream, patch |
| 1087116 |
toil: Python SyntaxWarning |
patch, pending |
|
|
| 1098011 |
tracetuner: ftbfs with GCC-15 |
forky, sid |
|
|
| 846481 |
src:treeviewx: Please remove statically linked code copy of libncl |
|
|
|
| 981874 |
trinityrnaseq: flaky autopkgtest |
bookworm, bullseye, sid, trixie |
|
|
| 1047488 |
twopaco: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1098031 |
ugene: ftbfs with GCC-15 |
forky, sid |
|
|
| 980509 |
umap-learn: Binary package name should be python3-umap-learn |
pending |
| 1058489 |
umap-learn: please (temporarily) drop python3-numba dependencies |
|
| 1071816 |
umap-learn: FTBFS: E TypeError: exceptions must be derived from Warning, not <class 'NoneType'> |
ftbfs |
|
|
| 1089115 |
umis: tracebacks normally fatal during autopkgtest runs |
upstream |
|
|
| 1098063 |
veryfasttree: ftbfs with GCC-15 |
forky, sid |
|
|
| 976511 |
vg: FTBFS on arm64: configure: error: Could not find a version of the library! |
bookworm, bullseye, ftbfs, sid, trixie |
| 987184 |
vg -- excessive variants built, and not tested |
|
| 1015699 |
vg: ftbfs with LTO (link time optimization) enabled |
sid, trixie |
| 1089275 |
vg: FTBFS with make 4.4.1 |
ftbfs, sid, trixie |
|
|
| 1098098 |
wise: ftbfs with GCC-15 |
forky, sid |
Open bugs in suggested packages
15 serious, 4 important, 19 normal, 6 minor, 6 wishlist
|
|
| 1089541 |
override_dh_auto_build Error |
|
|
|
| 928076 |
bcbio: Workflows not ready for non-developers to depend on. |
|
|
|
| 1085412 |
catfishq: Python SyntaxWarning |
|
|
|
| 1092364 |
cluster3: needs rebuild for Python 3.13 as default |
ftbfs |
|
|
| 1030327 |
science-numericalcomputation: please stop recommending python3-theano as it is being removed |
|
| 1032638 |
please drop transitional package science-electronics from src:debian-science |
|
| 1055339 |
debian-science: please replace recommendation of src:dolfin by src:fenics-dolfinx |
|
|
|
| 1081508 |
getdata: homepage defunct |
|
|
|
| 638753 |
libhdf5-serial-1.8.7: threadsafe memory leaks |
moreinfo |
| 716008 |
[Mayhem] Bug report on hdf5-tools: h5copy crashes with exit status 139 |
|
| 716010 |
[Mayhem] Bug report on hdf5-tools: h5diff crashes with exit status 139 |
|
| 716011 |
[Mayhem] Bug report on hdf5-tools: h5dump crashes with exit status 139 |
|
| 716012 |
[Mayhem] Bug report on hdf5-tools: h5import crashes with exit status 139 |
|
| 839784 |
libhdf5-dev: pkg-config file references ONLY the C library |
|
| 968559 |
libhdf5-openmpi-dev: hdf5-mpi.pc alternative sometimes goes missing |
moreinfo |
| 1023446 |
libhdf5-openmpi-dev: h5pcc configured as static build |
wontfix |
| 1040862 |
hdf5: S3 VFD pulls in networking dependencies (libcurl), please package it as a VFD plugin |
moreinfo |
| 1052250 |
pkg-config file incorrect for static linking |
|
|
|
| 1063953 |
intake: autopkgtest regression with pytest 8 |
|
| 1064752 |
intake: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.12 3.11" returned exit code 13 |
ftbfs, sid, trixie |
| 1067969 |
python3-intake: Please replace python3-appdirs dependency with platformdirs |
patch, pending, sid, trixie |
| 1088416 |
intake: move from twitter-bootstrap{3,4} to bootstrap-html (v5) |
upstream |
| 1094915 |
intake commatibility with zarr3 |
|
|
|
| 1067957 |
FTBFS: error: call of overloaded â__gmp_expr(__time64_t&)â is ambiguous |
ftbfs, sid, trixie |
|
|
| 1082368 |
FTBFS: TestIntegration.testIntegration: AssertionError: 1 != 0 |
confirmed, ftbfs |
|
|
| 1047039 |
pyrle: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1075928 |
python-anndata: tests fail with scipy 1.13 |
|
| 1094924 |
python-anndata compatibility with zarr3 |
|
|
|
| 1058482 |
python-loompy: please (temporarily) drop python3-numba dependencies |
|
| 1083659 |
python-loompy: (build-)depends on deprecated module python3-pkg-resources |
sid, trixie |
| 1085932 |
python-loompy: Python SyntaxWarning |
|
| 1090279 |
python-loompy: FTBFS: E ImportError: cannot import name '_typeconv' from 'numba.core.typeconv' |
ftbfs |
|
|
| 1046648 |
python-ncls: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1035277 |
python-seqcluster: please add autopkgtests (to add coverage for python3-numpy) |
|
|
|
| 1076318 |
q2-alignment hard-codes python 3.11 without depending on it |
sid, trixie |
|
|
| 1076080 |
q2cli: FTBFS in sid (python3.12) |
ftbfs |
|
|
| 1076315 |
q2-demux hard-codes python 3.11 without depending on it |
sid, trixie |
|
|
| 1071882 |
q2-feature-classifier: FTBFS: unsatisfiable build-dependencies |
ftbfs |
|
|
| 1076317 |
q2-phylogeny hard-codes python 3.11 without depending on it |
|
|
|
| 1076914 |
q2-quality-control: FTBFS: rm: cannot remove '/<<PKGBUILDDIR>>/debian/*/usr/lib/python3*/dist-packages/run_decontam.R': No such file or directory |
ftbfs |
|
|
| 1088514 |
q2templates: move from twitter-bootstrap{3,4} to bootstrap-html (v5) |
upstream |
|
|
| 1065333 |
q2-types: test data heavily outweighs actual code |
|
| 1076316 |
q2-types hard-codes python 3.11 without depending on it |
sid, trixie |
|
|
| 1097764 |
r-bioc-grohmm: ftbfs with GCC-15 |
forky, sid |
|
|
| 1083247 |
r-bioc-org.hs.eg.db: homepage defunct, standardize |
|
|
|
| 1036681 |
relion-cuda: FTBFS with CUDA 12: nvcc fatal : Value 'sm_35' is not defined for option 'gpu-architecture' |
ftbfs, sid, trixie |
| 1040128 |
relion-cuda: FTBFS with cub 2.0.1: error: function "cub::Debug" has already been defined |
ftbfs, sid, trixie |
|
|
| 1049268 |
resfinder-db: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 986200 |
sift: Please provide autopkgtest |
newcomer |
| 987606 |
sift: does not autobuild on buildds |
|
Done bugs
|
|
| 1094355 |
adun.app: FTBFS with the GNUstep multiarch layout: hard codes paths in debian/rules |
ftbfs, sid, trixie |
| 1094362 |
adun.app: FTCBFS: error: unrecognized command-line option â-Wbriefâ |
|
|
|
| 1092524 |
ariba: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.12 3.13" returned exit code 13 |
ftbfs, sid, trixie |
| 1094514 |
ariba: FTBFS: unsatisfiable build-dependencies: python3-numpy-abi9, python3-numpy-abi9 |
ftbfs, sid, trixie |
| 1094725 |
Missing dependency on python3-pkg-resources |
|
|
|
| 1018312 |
bcbio: build-depends on python3-nose or uses it for autopkgtest |
sid, trixie |
|
|
| 1091151 |
deblur: FTBFS on arm64: build-dependency not installable: sortmerna (> 4~) |
ftbfs, sid, trixie |
|
|
| 1094082 |
density-fitness: FTBFS: density-fitness.cpp:37:10: fatal error: mcfp.hpp: No such file or directory |
ftbfs, sid, trixie |
|
|
| 1095338 |
diamond-aligner: FTBFS: collect2: fatal error: cannot find 'ld' |
ftbfs, sid, trixie |
|
|
| 1067271 |
freebayes: FTBFS: dh_auto_test: error: cd build && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 MESON_TESTTHREADS=8 meson test -v --timeout-multiplier 100 returned exit code 5 |
ftbfs |
|
|
| 1033703 |
gffread: autopkgtest regression: test dependency not in testing |
bookworm-ignore |
|
|
| 1092058 |
ghmm ftbfs with Python 3.13 as the default |
ftbfs, sid, trixie, upstream |
|
|
| 915807 |
hdf5: CVE-2017-17507 |
security, upstream |
|
|
| 1082721 |
khmer: FTBFS: failing tests |
ftbfs |
| 1085660 |
khmer: Python SyntaxWarning |
|
|
|
| 1098290 |
src:last-align: fails to migrate to testing for too long |
sid, trixie |
|
|
| 1015525 |
libssw: ftbfs with LTO (link time optimization) enabled |
experimental, sid, trixie |
|
|
| 1073098 |
math-numeric-tower-clojure: build-depends on markdown |
|
| 1074044 |
libvcflib: Improve support for loongarch64 |
patch |
|
|
| 1092065 |
obitools ftbfs with Python 3.13 as the default |
ftbfs, sid, trixie |
|
|
| 1094701 |
pairtools: FTBFS on 32-bit with numpy 2.x: Python int too large to convert to C long |
ftbfs |
|
|
| 964082 |
parsinsert fails it's tests when built with -O2 |
bookworm, bullseye, sid, trixie |
|
|
| 1048822 |
plink2: Fails to build source after successful build |
ftbfs, sid, trixie |
|
|
| 1085786 |
porechop: Python SyntaxWarning |
|
|
|
| 1095281 |
pycorrfit: missing dependency on numpy abi |
|
| 1095798 |
pycorrfit: FTBFS on mips64el: test failures |
ftbfs |
|
|
| 1080880 |
Missing Build-Depends on python3-setuptools |
sid, trixie |
|
|
| 1095282 |
pyscanfcs: missing dependency on numpy abi |
sid, trixie |
| 1095368 |
pyscanfcs: FTBFS: E OverflowError: Python integer 65536 out of bounds for uint16 |
ftbfs, sid, trixie |
|
|
| 1095088 |
python-deeptools: autopkgtests fail with numpy 2.x |
ftbfs |
|
|
| 1054591 |
python3-pyflow: ${VERSION} not expanded in package metadata, causing PEP-440 validation failures |
|
| 1081243 |
python3-pyflow: helloWorld and other examples not runnable, possibly since python2 dropped |
upstream, wontfix |
|
|
| 1087457 |
python3-pysam: autopkgtest regression with htslib 1.21 |
fixed-upstream, upstream |
|
|
| 1034852 |
r-bioc-annotationhub: autopkgtest regression: download failed |
bookworm-ignore |
|
|
| 1033853 |
r-bioc-megadepth: autopkgtest regression: different output |
bookworm-ignore |
|
|
| 1025045 |
r-bioc-structuralvariantannotation: Test failures in autopkgtest |
bookworm-ignore, upstream |
|
|
| 1088634 |
src:r-cran-amap: fails to migrate to testing for too long: autopkgtest failure on i386 |
sid, trixie |
|
|
| 1091919 |
r-cran-seurat: autopkgtest regression on riscv64 and s390x |
|
|
|
| 976523 |
spades: FTBFS: jemalloc_internal.h:292:6: error: #error "No LG_QUANTUM definition for architecture; specify via CPPFLAGS" |
bookworm, bullseye, ftbfs, sid, trixie |
| 1087093 |
spades: Python SyntaxWarning |
|
|
|
| 1095396 |
stacks: FTBFS: Make sure /usr/share/automake-*/tap-driver.sh exists and is linked |
ftbfs, sid, trixie |
|
|
| 1095285 |
tiddit: missing dependency on numpy abi |
|
|
|
| 1083799 |
tnseq-transit: (build-)depends on deprecated module python3-pkg-resources |
sid, trixie |
|
|
| 1093865 |
ugene: Unnecessary Build-Depends: libqt5webkit5-dev |
|
|
