Summary

Bugs of task bio-ngs

Total bugs: 9

Open bugs: 7

Fixed bugs: 2

Links to other tasks

Tasks overview

Biology 297 (2635)

Biology development 142 (1237)

Next generation sequencing 7 (35)

Phylogeny 14 (180)

Cloud 66 (681)

Content management 0 (0)

Covid-19 195 (1857)

Medical data 0 (0)

Dental 2 (12)

Epidemiology 18 (204)

Hospital information systems 2 (24)

Imaging 204 (843)

Imaging development 79 (487)

Laboratory 1 (9)

Oncology 1 (3)

Pharmacology 1 (9)

Physics 24 (159)

Practice 6 (45)

Psychology 11 (133)

Rehabilitation 0 (0)

Research 0 (0)

Statistics 4 (16)

Tools 35 (227)

Typesetting 80 (623)

Legend

Severity	Dependent	Suggested
critical	0	0
grave	0	0
serious	0	2
important	0	0
normal	0	1
minor	4	0
wishlist	0	0

Summary bugs page of task Next generation sequencing

Consider looking into bugs of this task^*

Open bugs in dependent packages

4 minor

bedtools (2) Homepage: https://github.com/arq5x/bedtools2 Vcs Debian Med Packaging Team
1104751	bedtools: FTBFS with GNUMAKEFLAGS=--shuffle=random	patch
1105730	bedtools: FTBFS with make --shuffle=random: src/utils/version/version.cpp:2:10: fatal error: version_git.h: No such file or directory	ftbfs, sid, trixie
last-align (1) Homepage: https://gitlab.com/mcfrith/last Vcs Debian Med Packaging Team
1048396	last-align: Fails to build source after successful build	ftbfs, sid, trixie
velvet (1) Homepage: https://github.com/dzerbino/velvet Vcs Debian Med Packaging Team
1105569	velvet: FTBFS with make --shuffle=reverse: Fatal error: can't create obj/autoOpen.o: No such file or directory	ftbfs, sid, trixie

Open bugs in suggested packages

2 serious, 1 normal

python-anndata (3) Homepage: https://github.com/theislab/anndata Vcs Debian Med Packaging Team
1075928	python-anndata: tests fail with scipy 1.13
1094924	python-anndata compatibility with zarr3	fixed-upstream, ftbfs, sid, trixie
1100261	python-anndata: FTBFS: E AttributeError: module 'zarr' has no attribute 'DirectoryStore'	fixed-upstream, ftbfs, sid, trixie

Done bugs

sra-sdk (2) Homepage: https://github.com/ncbi/sra-tools/ Vcs Debian Med Packaging Team
1097930	sra-sdk: ftbfs with GCC-15	forky, sid
1103330	sra-sdk: FTBFS with the nocheck build profile	ftbfs, sid, trixie

^*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:

critical	10
grave	10
serious	10
important	5
normal	3
minor	1
wishlist	0