Summary

Bugs of task bio-ngs

Total bugs: 12

Open bugs: 8

Fixed bugs: 4

Links to other tasks

Tasks overview

Biology 287 (2532)

Biology development 136 (1184)

Next generation sequencing 8 (87)

Phylogeny 7 (54)

Cloud 46 (504)

Content management 0 (0)

Covid-19 180 (1800)

Medical data 2 (10)

Dental 2 (12)

Epidemiology 11 (102)

Hospital information systems 1 (9)

Imaging 198 (826)

Imaging development 79 (576)

Laboratory 1 (9)

Oncology 1 (3)

Pharmacology 1 (9)

Physics 27 (192)

Practice 8 (51)

Psychology 12 (121)

Rehabilitation 0 (0)

Research 0 (0)

Statistics 4 (16)

Tools 39 (240)

Typesetting 68 (543)

Legend

Severity	Dependent	Suggested
critical	0	0
grave	0	0
serious	1	0
important	1	0
normal	4	1
minor	1	0
wishlist	0	0

Summary bugs page of task Next generation sequencing

Immediately looking into bugs of the dependencies of this task is advised (87)^*

Open bugs in dependent packages

1 serious, 1 important, 4 normal, 1 minor

blasr (1) Homepage: https://github.com/PacificBiosciences/blasr Vcs Debian Med Packaging Team
1067374	blasr: FTBFS: ./obj-x86_64-linux-gnu/../extrautils/StoreQualityByContextFromCmpH5.cpp:40: multiple definition of `main'; toAfg.p/utils_ToAfg.cpp.o:./obj-x86_64-linux-gnu/../utils/ToAfg.cpp:30: first defined here	ftbfs, sid, trixie
last-align (1) Homepage: https://gitlab.com/mcfrith/last Vcs Debian Med Packaging Team
1048396	last-align: Fails to build source after successful build	ftbfs, sid, trixie
libvcflib (2) Homepage: https://github.com/vcflib/vcflib Vcs Debian Med Packaging Team
1073098	math-numeric-tower-clojure: build-depends on markdown	pending
1074044	libvcflib: Improve support for loongarch64	patch, pending
samtools (1) Homepage: https://www.htslib.org/ Vcs Debian Med Packaging Team
1087456	samtools: autopkgtest regression with htslib 1.21
sra-sdk (2) Homepage: https://github.com/ncbi/sra-tools/ Vcs Debian Med Packaging Team
1084404	sra-sdk: move from fuse to fuse3
1087096	sra-sdk: Python SyntaxWarning

Open bugs in suggested packages

1 normal

python-anndata (1) Homepage: https://github.com/theislab/anndata Vcs Debian Med Packaging Team
1075928	python-anndata: tests fail with scipy 1.13

Done bugs

htslib (3) Homepage: https://github.com/samtools/htslib Vcs Debian Med Packaging Team
1086364	metabat: FTBFS: Package 'bzip2', required by 'htslib', not found	ftbfs, sid, trixie
1086367	libhts-dev: Missing dependency on libbz2-dev	ftbfs
1086368	libhts-dev: Missing dependency on libbz2-dev	ftbfs
sra-sdk (1) Homepage: https://github.com/ncbi/sra-tools/ Vcs Debian Med Packaging Team
1040391	sra-toolkit: broken symlink: /usr/lib/debian-med/bin/kget -> ../../../bin/vdb-get

^*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:

critical	10
grave	10
serious	10
important	5
normal	3
minor	1
wishlist	0