Debian Med Project
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Summary
Bugs of task bio-phylogeny
Total bugs: 19
Open bugs: 15
Fixed bugs: 4
Links to other tasks
Biology 294 (2598)
Biology development 149 (1582)
Phylogeny 15 (156)
Cloud 51 (471)
Covid-19 210 (2267)
Medical data 0 (0)
Dental 3 (21)
Epidemiology 31 (399)
Imaging 219 (983)
Laboratory 1 (9)
Oncology 1 (3)
Pharmacology 1 (9)
Physics 27 (213)
Practice 7 (54)
Psychology 15 (143)
Research 0 (0)
Statistics 8 (20)
Tools 36 (230)
Typesetting 75 (659)
Legend
SeverityDependentSuggested
critical 0 0
grave 0 0
serious 3 0
important 1 0
normal 5 0
minor 2 0
wishlist 4 0

Summary bugs page of task Phylogeny

Immediately looking into bugs of the dependencies of this task is advised (156)*

Open bugs in dependent packages

3 serious, 1 important, 5 normal, 2 minor, 4 wishlist
1067631 src:altree: autopkgtest timeouts on armel, armhf and ppc64el confirmed, help
1025424 beast-mcmc: please enable autopkgtest help
1107598 beast-mcmc: please honor CFLAGS
1107772 gmap inlining failed in call to ‘always_inline’ ‘_mm_alignr_epi8’: target specific option mismatch confirmed, ftbfs
1120150 hmmer: Ship easel miniapps instead of easel source code.
1095078 jmodeltest: reduce the permissions on /var/log/jmodeltest
1099239 jmodeltest: FTBFS: rc/main/java/es/uvigo/darwin/jmodeltest/io/HtmlReporter.java:38: error: cannot find symbol forky, ftbfs, sid, trixie
1105460 muscle: FTBFS with make --shuffle=reverse: Fatal error: can't create Linux/usage.o: No such file or directory forky, ftbfs, sid, trixie
1106652 phyml FTCBFS: cross compilation support reverted patch, upstream
1074546 FTBFS with OCaml 5.2.0 (Uses C functions without caml_ prefix) ftbfs
1093109 pplacer: FTBFS with OCaml 5.3.0 (error in C stubs) ftbfs
956848 t-coffee: should use "example" blastpgp.pl
1106704 tree-puzzle FTCBFS: uses mpicc patch, upstream
1108273 tree-puzzle: please make the build reproducible patch
846481 src:treeviewx: Please remove statically linked code copy of libncl

Open bugs in suggested packages

Done bugs

1103312 hmmer: FTBFS with the nocheck build profile forky, ftbfs, sid
1096850 iqtree: ftbfs with GCC-15 forky, ftbfs, sid
1113054 iqtree: FTBFS with CMake 4 forky, ftbfs, sid
1118378 veryfasttree: FTBFS with robin-map 1.4.0
*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:
critical10
grave10
serious10
important5
normal3
minor1
wishlist0
Last update: Fri, 07 Nov 2025 18:17:42 -0000