Summary
Electrophysiology
Debian Science - pakker for elektrofysiologi
Denne metapakke vil installere Debianpakker, som kan være nyttige for
videnskabsmænd, der udfører elektrofysiologisk neurovidenskabelig forskning.
Udvalget af pakker er målrettet anvendelsen af analyseteknikker.
Metodeudviklere refereres til metapakkerne science-statistics,
science-imageanalysis, science-numericalcomputation, med-imaging og
med-imaging-dev for en række yderligere programmer, som kan være nyttige
til elektrofysiologisk forskning.
Description
For a better overview of the project's availability as a Debian package, each head row has a color code according to this scheme:
If you discover a project which looks like a good candidate for Debian Science
to you, or if you have prepared an unofficial Debian package, please do not hesitate to
send a description of that project to the Debian Science mailing list
Links to other tasks
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Debian Science Electrophysiology packages
Official Debian packages with high relevance
libdrawtk-dev
??? missing short description for package libdrawtk-dev :-(
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Versions of package libdrawtk-dev |
Release | Version | Architectures |
jessie | 2.0-2.1 | amd64,armel,armhf,i386 |
Debtags of package libdrawtk-dev: |
devel | lang:c, library |
interface | x11 |
role | devel-lib, documentation, examples, program |
science | plotting |
uitoolkit | sdl |
use | viewing |
x11 | application |
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License: DFSG free
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libgdf-dev
IO-bibliotek for GDF'en - udviklingsbiblioteket
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Versions of package libgdf-dev |
Release | Version | Architectures |
jessie | 0.1.2-2 | amd64,armel,armhf,i386 |
stretch | 0.1.2-2 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
buster | 0.1.2-2.1 | amd64,arm64,armhf,i386 |
bullseye | 0.1.3-8 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bookworm | 0.1.3-11 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
trixie | 0.1.3-11.1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
sid | 0.1.3-11.1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
Debtags of package libgdf-dev: |
devel | library |
role | devel-lib |
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License: DFSG free
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GDF (General Dataformat for Biosignals) er lavet for at tilbyde et generisk
lager for biosignaler, såsom EEG, ECG, MEG etc.
Denne pakke tilbyder teksthovedfilerne.
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sigviewer
Grafisk brugerflade-fremviser for biosignaler såsom EEG, EMG og ECG
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Versions of package sigviewer |
Release | Version | Architectures |
buster | 0.6.2-2 | amd64,arm64,armhf,i386 |
stretch | 0.5.1+svn556-5 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
bullseye | 0.6.4-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
jessie | 0.5.1+svn556-4 | amd64,armel,armhf,i386 |
bookworm | 0.6.4-3 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
trixie | 0.6.4-3 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
sid | 0.6.4-3 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
Debtags of package sigviewer: |
interface | x11 |
role | program |
uitoolkit | qt |
use | viewing |
x11 | application |
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License: DFSG free
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SigViewer er et fremvisnings- og bedømmelsesprogram for biomedicinske
signaldata. Det afhænger af biosig4c++-biblioteket, som understøtter et
antal dataformater (inklusive EDF, BDF, GDF, BrainVision, BCI2000, CFWB,
HL7aECG, SCP_ECG (EN1064), MFER, ACQ, CNT(Neuroscan), DEMG, EGI, EEG1100,
FAMOS, SigmaPLpro, TMS32). Den fuldstændige liste over understøttede
filformater er tilgængelig på http://pub.ist.ac.at/~schloegl/biosig/TESTED.
Udover at vise biosignaler undestøtter SigViewer oprettelse af annotationer
til at vælge artefakter eller specifikke hændelser.
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Official Debian packages with lower relevance
aghermann
Program for soveforskningseksperimenter
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Versions of package aghermann |
Release | Version | Architectures |
sid | 1.1.2-5 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
trixie | 1.1.2-5 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bookworm | 1.1.2-3 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bullseye | 1.1.2-3 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
buster | 1.1.2-2 | amd64,arm64,armhf,i386 |
stretch | 1.1.2-1 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
jessie | 1.0.2-1 | amd64,armel,armhf,i386 |
Debtags of package aghermann: |
uitoolkit | gtk |
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License: DFSG free
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Aghermann er et program designet omkring et fælles arbejdsforløb indenfor
soveforskning, fuldstændig med bedømmelsesfacilitet; cairo
underbilledpunktstegning på skærmen eller til en fil; konventionel PSD- og
EEG Micrcontinuity-profiler; uafhængig komponentanalyse;
artefaktdetekering og Process S-simulering der følger Achermann et al,
1993.
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klustakwik
Automatisk sortering af eksempler (spikes) i klynger
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Versions of package klustakwik |
Release | Version | Architectures |
sid | 3.0.2+ds-2 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
trixie | 3.0.2+ds-2 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bookworm | 3.0.2+ds-2 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bullseye | 3.0.2+ds-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
buster | 2.0.1-1 | amd64,arm64,armhf,i386 |
stretch | 2.0.1-1 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
jessie | 2.0.1-1 | amd64,armel,armhf,i386 |
Debtags of package klustakwik: |
role | program |
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License: DFSG free
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KlustaKwik er et program til automatisk klyngeopbygning af sammenhængende
data til en blanding af Gaussians. Programmet blev oprindelig udviklet for
sortering af neuronale handlingspotentialer, men kan anvendes til alle
slags data.
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libbiosig-dev
I/O-bibliotek for biomedicinske data - udviklingsfiler
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Versions of package libbiosig-dev |
Release | Version | Architectures |
bullseye | 2.1.2-4 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
stretch | 1.3.0-2.2 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
jessie | 1.3.0-2 | amd64,armel,armhf,i386 |
buster | 1.9.3-2 | amd64,arm64,armhf,i386 |
sid | 2.6.1-1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
trixie | 2.6.1-1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bookworm | 2.5.0-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
Debtags of package libbiosig-dev: |
devel | examples, library |
role | devel-lib |
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License: DFSG free
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BioSig er et bibliotek for adgang til filer i flere forskellige
biomedicinske dataformater (inklusive EDF, BDF, GDF, BrainVision, BCI2000,
CFWB, HL7aECG, SCP_ECG (EN1064), MFER, ACQ, CNT(Neuroscan), DEMG, EGI,
EEG1100, FAMOS, SigmaPLpro, TMS32). Den fulde liste over understøttede
filformater er tilgængelig på http://pub.ist.ac.at/~schloegl/biosig/TESTED .
Denne pakke tilbyder hovedfiler og det statiske bibliotek.
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libeegdev-dev
Bibliotek til enheder som registrerer biosignaler - udviklingsfiler
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Versions of package libeegdev-dev |
Release | Version | Architectures |
sid | 0.2-9 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
stretch | 0.2-3.1 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
buster | 0.2-4 | amd64,arm64,armhf,i386 |
bullseye | 0.2-5 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bookworm | 0.2-6 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
trixie | 0.2-9 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
jessie | 0.2-3.1 | amd64,armel,armhf,i386 |
Debtags of package libeegdev-dev: |
devel | library |
role | devel-lib |
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License: DFSG free
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Eegdev er et bibliotek som tilbyder en samlet grænseflade, der tilgår
forskellige EEG-signalsystemer (og andre biosignaler). Denne grænseflade er
designet til at være både fleksibel og effektiv. Den enhedsspecifikke del
er implementeret gennem udvidelsesmoduler, der gør det rimelig nemt at
tilføje nye enhedsmotorer, selv hvis biblioteket endnu ikke understøtter
dem officielt.
Kernebiblioteket tilbyder ikke kun brugerne samlede og konsistente
grænseflader til registreringsenheden, det tilbyder også mange funktioner
til enhedsmotorerne, rækkende fra konfiguration af data-typekonvertering og
-skalering, hvilket gør det nemt at skrive nye enhedsmotorer.
Dette bibliotek er særligt nyttigt til håndtering af registreringsdelen for
en grænseflade af typen Brain Computer Interface (BCI), eller enhver
realtids multi-elektrode-registreringsenhed i neurofysiologisk forskning.
Denne pakke indeholder filerne krævet for at kompilere og lænke programmer,
der bruger eegdev. Pakken tilbyder også teksthovederne krævet for at
udvikle nye enhedsudvidelsesmoduler. Manualsiderne og eksempler er
indeholdt i denne pakke.
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librtfilter-dev
realtime digital filtering library (development files)
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Versions of package librtfilter-dev |
Release | Version | Architectures |
stretch | 1.1-4 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
jessie | 1.1-4 | amd64,armel,armhf,i386 |
bookworm | 1.1-4 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
trixie | 1.1-4 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
sid | 1.1-4 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bullseye | 1.1-4 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
buster | 1.1-4 | amd64,arm64,armhf,i386 |
Debtags of package librtfilter-dev: |
devel | lang:c, library |
field | biology, biology:bioinformatics |
role | devel-lib, documentation, examples |
science | calculation |
use | filtering |
works-with | audio, biological-sequence |
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License: DFSG free
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rtfilter is a library that provides a set of routines implementing realtime
digital filter for multichannel signals (i.e. filtering multiple signals
with the same filter parameters). It implements FIR, IIR filters and
downsampler for float and double data type (both for real and complex
valued signal). Additional functions are also provided to design few usual
filters: Butterworth, Chebyshev, windowed sinc, analytical filter...
One of the main differences from other libraries providing digital signal
processing is that the filter functions have been specifically designed and
optimized for multichannel signals (from few channels to several hundred).
This package contains the files needed to compile and link programs which
use rtfilter.
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libxdffileio-dev
Bibliotek til at læse/skrive EEG-datafilformater - udviklingsfiler
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Versions of package libxdffileio-dev |
Release | Version | Architectures |
sid | 0.3-4 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bookworm | 0.3-4 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
stretch | 0.3-1 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
trixie | 0.3-4 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
jessie | 0.3-1 | amd64,armel,armhf,i386 |
buster | 0.3-2.1 | amd64,arm64,armhf,i386 |
bullseye | 0.3-4 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
Debtags of package libxdffileio-dev: |
devel | library |
role | devel-lib |
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License: DFSG free
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Xdffileio er et bibliotek, der tilbyder en ensartet grænseflade til at skrive og læse diverse biosignal-filformater i realtid (dvs. udsendelser). Er blevet designet til at tilbyde en fleksibel, konsistent og generisk grænseflade til alle understøttede filformater, mens den minimerer belastningen funktionen kalder: de tungeste operationer (type casting, skalering og formatering) frakobles i en separat tråd. Dette design gør det specielt egnet til direkte brug i en dataindhentelsesløkke (som i elektrofysiologi-optagelse eller i Brain-Computer Interfaces (BCI)).
Genericiteten for grænsefladen udfører diverse trivielle operationer såsom transformation af en optaget fil eller dets konvertering til et andet filformat. Xdffleio understøtter i øjeblikket filformaterne EDF, BDF, GDF1 og GDF2 og flere vil blive tilføjet i fremtiden.
Denne pakke indeholder filerne krævet til at kompilere og henvise programmer, der bruger xdffileio.
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python3-bioxtasraw
Behandl biologiske plotdata med lille vinkel
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Versions of package python3-bioxtasraw |
Release | Version | Architectures |
sid | 2.3.0-1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64 |
bookworm | 2.1.1-4 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el |
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License: DFSG free
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BioXTAS RAW er et Pythonprogram, baseret på en grafisk brugerflade, til reduktion og analyse af lille-vinkel røntgenplotdata (SAXS). Pakken er designet for biologiske SAXS-data.
BioXTAS RAW tilbyder et alternativ til lukkede kildeprogrammer såsom Primus og Scatter for primær dataanalyse. Da programmet kan kalibrere, maskere og integrere billeder, så er det også et alternativ til synchroton beamline-datakanaler, som videnskabsfolk kan installere på deres egen computer og bruge både hjemme og ved beamline.
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python3-neo
Python IO-bibliotek for elektrofysologiske dataformater
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Versions of package python3-neo |
Release | Version | Architectures |
trixie | 0.13.4-1 | all |
sid | 0.13.4-1 | all |
bookworm | 0.11.1-1 | all |
bullseye | 0.9.0-1 | all |
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License: DFSG free
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NEO står for Neural Ensemble Objects og er et projekt, der tilbyder fælles klasser og koncepter for håndtering af elektrofysiologiske (in vivo og/eller simulerede) data til at facilitere samarbejdende program/algoritme-udvikling. Specifikt tilbyder Neo: et sæt af klasser med datarepræsentation med præcise definitioner, et IO-modul med en simpel API, dokumentation og et sæt af eksempler.
NEO tilbyder understøttelse for læsning af data fra utallige proprietære filformater (f.eks. Spike2, Plexon, AlphaOmega, BlackRock, Axon), understøttelse af læs/skriv for diverse åbne formater (f.eks. KlustaKwik, Elan, WinEdr, WinWcp, PyNN) samt understøttelse for gængse filformater, såsom HDF5 med Neo-struktureret indhold (NeoHDF5, NeoMatlab).
Neo's IO-faciliteter kan ses som en pure-Python og open-source Neuroshare-erstatning.
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science-dataacquisition
Debian Science - dataindhentelsespakker
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Versions of package science-dataacquisition |
Release | Version | Architectures |
stretch | 1.7 | all |
jessie | 1.4 | all |
sid | 1.14.6 | all |
buster | 1.10 | all |
bullseye | 1.14.2 | all |
trixie | 1.14.6 | all |
bookworm | 1.14.5 | all |
Debtags of package science-dataacquisition: |
role | metapackage |
suite | debian |
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License: DFSG free
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Denne metapakke vil installere Debian Science-pakker relateret til
dataindhentelse. Dette kan bruges indenfor flere videnskaber (som for
eksempel science-viewing og science-typesetting).
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science-neuroscience-modeling
Debian Science - pakker til modellering af neurale systemer
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Versions of package science-neuroscience-modeling |
Release | Version | Architectures |
trixie | 1.14.6 | all |
jessie | 1.4 | all |
stretch | 1.7 | all |
buster | 1.10 | all |
bullseye | 1.14.2 | all |
bookworm | 1.14.5 | all |
sid | 1.14.6 | all |
Debtags of package science-neuroscience-modeling: |
role | metapackage |
suite | debian |
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License: DFSG free
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Denne metapakke vil installere Debianpakker, som kan være nyttige for
videnskabsmænd interesseret i modellering af neurale netværkssystemer på
forskellige niveauer (fra en enkel neuron til komplekse netværk).
Udvalget af pakker er målrettet anvendelsen af simuleringsteknikker.
Metoder som udviklere refereres til er metapakkerne science-statistics,
science-imageanalysis, science-numericalcomputation, med-imaging, og
med-imaging-dev for en række yderligere programmer, som kan være nyttige
indenfor neurovidenskabelig forskning.
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stimfit
Program til visning og analyse af elektrofysiologiske data
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Versions of package stimfit |
Release | Version | Architectures |
bookworm | 0.16.0-1.2 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
jessie | 0.13.19-1 | amd64,armel,armhf,i386 |
buster | 0.15.8-1 | amd64,arm64,armhf,i386 |
sid | 0.16.0-1.2 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bullseye | 0.16.0-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
Debtags of package stimfit: |
role | program |
uitoolkit | wxwidgets |
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License: DFSG free
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Stimfit er et gratis, hurtigt og simpelt program til visning og analyse af
elektrofysiologiske data. Den er udstyret med en indlejret Pythonskal,
som giver dig mulighed for at udvide programmets funktionalitet ved hjælp
af numeriske biblioteker såsom NumPy og SciPy.
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Packaging has started and developers might try the packaging code in VCS
eegview
Software to display EEG data in realtime
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Versions of package eegview |
Release | Version | Architectures |
VCS | 0.0-1 | all |
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License: GPL-3+
Debian package not available
Version: 0.0-1
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This software allows one to display EEG signal in realtime as well as
record them. It is the minimal recording panel needed to do simple
experiment.
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libmcpanel-dev
Library to display multichannel data in realtime (Developement files)
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Versions of package libmcpanel-dev |
Release | Version | Architectures |
VCS | 0.0-1 | all |
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License: GPL-3+
Debian package not available
Version: 0.0-1
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This package provides a library written in C implementing a set of widgets
designed to view in realtime multichannels signals. Despite it has been
initially design to view signals coming from a BIOSEMI Activetwo EEG
system, it is totally system agnostic and any user of other system might
find it useful.
This package contains the files needed to compile and link programs which
use mcpanel
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IO library for electrophysiological data formats in Python
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License: BSD
Debian package not available
Language: Python
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NEO stands for Neural Ensemble Objects and is a project to provide common
class names and concepts for dealing with electro-physiological (in vivo
and/or simulated) data with the aim of getting OpenElectrophy, NeuroTools,
G-node and maybe other projects with similar goals more close together.
In particular Neo provides:
- a set a classes with precise definitions
- an IO module that offer a simple API that fit many formats
- documentation.
- a set of examples like a format convertor
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openelectrophy
data analysis GUI for intra- and extra-cellular recordings
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Versions of package openelectrophy |
Release | Version | Architectures |
VCS | 0.0.svn143 | all |
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License: free
Debian package not available
Version: 0.0.svn143
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This package provides the startup script for the OpenElectrophy GUI.
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Unofficial packages built by somebody else
eeglab
toolbox for processing and visualization of electrophysiological data
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License: GPL-2+
Language: C, Matlab/Octave
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EEGLAB is an interactive Matlab toolbox for processing continuous and
event-related EEG, MEG and other electrophysiological data
incorporating independent component analysis (ICA), time/frequency
analysis, artifact rejection, event-related statistics, and several
useful modes of visualization of the averaged and single-trial data.
Please register by following this link if you are using eeglab.
Please cite:
Delorme A and Makeig S:
EEGLAB: an open source toolbox for analysis of single-trial EEG dynamics
(2004)
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No known packages available but some record of interest (WNPP bug)
Data Acquisition and Neural Spike Processing Software
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License: GPL-2+
Debian package not available
Language: C
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BlueSpike is an electrophysiology tool to perform real-time data
acquisition, visualization and sorting of neuronal spikes. It
continuously acquires data every 1 ms and realizes digital signal
processing on retrieved data. Contains four components:
- KernelSpike: a kernel module.
- SpikeViewever
- SpikeSorter
- Channel Reviewer
Please cite:
Mehmet Kocaturk <kocaturk@gmail.com> et al.:
Real-time experimental interface for electrophysiology experiments
(2010)
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tools for recording from MEAs and RT processing
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License: GPL-2+
Debian package not available
Language: C++
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Meabench is a set of interacting linux programs for recording data
from MEAs and real time processing. It can be used to acquire and
visualize data from MultiChannel Systems multi-electrode array
hardware in real time. On-line spike detection is available, as well
as suppression of artifacts induced by 60 Hz pickup and by
stimulation. A growing number of small utilities for data analysis is
included with the source code, and you can easily add your
own. Meabench provides continuous and triggered recording of raw
electrode data as well as extracted spike data. Meabench is very
suitable for real-time feedback stimulation, since roundtrip times
from pre-amplifier to stimulator is less than 200 ms worst-case (less
than 50 ms average).
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framework for closed-loop neurophysiological experiments
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License: GPL-2+
Debian package not available
Language: C++
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RELACS is designed as an framework for closed-loop experiments that
may considerably speed up this traditional approach and in addition
offers novel experimental possibilities. In a closed-loop experiment
a stimulus is presented, the resulting response is immediately
analyzed, and properties of the next stimulus (e.g. mean
intensity) are adjusted as needed.
RELACS comes with an extensive set of data-analysis functions. The
functions are implemented in C++ to allow fast and memory efficient
data-analysis as it is required for closed-loop experiments:
- Basic statistics (e.g. mean, standard deviation)
- Spectral analysis: power spectrum, transfer function, coherence
- Linear and nonlinear fits (Levenberg-Marquardt and Simplex)
- Peak detection
- Histograms, interpolation
- Stimulus generation: pulse, saw tooth, band-pass filtered white
noise, Ornstein-Uhlenbeck noise
- Firing rates: mean, binned, convolved with kernels (e.g. rectangle,
triangle, Gaussian)
- Interspike intervals: histogram, CV, serial correlation, etc.
- Spike timing precision: vector strength, reliability, correlation,
synchrony etc.
RELACS plugin infrastructure allows to adapt it to specific hardware
drivers and they allow you to implement research protocols, filters,
spike detectors, etc.
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GUI application for navigating, analyzing and visualizing electrophysiological datasets
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License: promised MIT or BSD-3
Debian package not available
Language: Python
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Based on the neo framework, it works with a wide variety of data
formats. Plugin interfaces allow for rapid extension with custom
analyses.
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No known packages available
chronus
platform for analysis of neural signals
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License: GPL-2+
Debian package not available
Language: C, Matlab/Octave
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Chronux is a Matlab toolbox for signal processing of neural time
series data, several specialized mini-packages for spike sorting,
local regression, audio segmentation and other tasks. It also
includes a graphical user interface (GUI). The current version of
the GUI contains a number of features specialised to the analysis of
electroencephalography (EEG) data. The eventual aim is to provide
domain specific user interfaces (UIs) for each experimental modality,
along with corresponding data management tools.
Please register by following this link if you are using chronus.
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mclust
Matlab toolbox for clustering of electrophysiologic recordings
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License: non-DFSG (restrictions: modifications, attribution)
Debian package not available
Language: C/C++, Matlab
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MClust is a toolbox which enables a user to perform automated and
manual clustering on single-electrode, stereotrode, and tetrode
recordings. It allows manual corrections to automated clustering
results. It outputs t-files, which contain (after a header) a list
of timestamps in binary format. Timestamps are 32-bit longs at a
resolution of 10 timestamps/ms.
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neurodata
suite to analyze data acquired from electrophysiology experiments
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License: GPL-2+
Debian package not available
Language: C++, Octave/Matlab, Perl
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Currently, neurodata has an Octave/MATLAB program to analyze
electroneurogram traces of coupled oscillators, and a Perl library
for the analysis of voltage trace data.
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nspike
electrophysiological and behavioral data collection
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License: GPL-2+
Debian package not available
Language: C++
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This project is a electrophysiological and behavioral data collection
program that can distribute data collection tasks across multiple
machines. It is designed to interface with the NSpike hardware
system.
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patchclamp
recorder of single-channel and whole-cell currents
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License: GPL-2+
Debian package not available
Language: C/C++
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The ultimate aim is to create an extremely user-friendly software to
perform the most common tasks of recording single channels and
whole-cell currents
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pymeg
suite for analysis of magnetoencephalography (MEG) data
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License: GPL-3
Debian package not available
Language: Python
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PyMEG is a project in Python to do various neuroimaging processing
with magnetoencephalography (MEG) data. The purpose of this project,
is to create a suite of functions to do MEG analysis in Python.
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qrtailab
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License: LGPL-2
Debian package not available
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QRtaiLab is a QT-based port of the software scope xrtailab of the
RTAI project. It can be used as virtual oscilloscope and monitoring
application for interacting with the real-time external.
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rtxi
real-time data acquisition and control applications in biological research
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License: GPL-2+
Debian package not available
Language: C++
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The Real-Time eXperiment Interface (RTXI) is a collaborative
open-source software development project aimed at producing a
real-time Linux based software system for hard real-time data
acquisition and control applications in biological research.
Core functionality of RTXI gets extended via plugins, such as
- Data Recorder
- Virtual Dendrite
- Spike-triggered Average
- Phase Response Curve
- Signal processing
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spike
spike train analysis toolbox
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License: BSD-3 and Academic Free License
Debian package not available
Language: C++, Octave/Matlab
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This toolbox implements several information-theoretic spike train analysis
techniques. This implementation behaves like a typical MATLAB toolbox, but
the underlying computations are coded in C and optimized for efficiency.
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trellis-neuro
interface to neurophysiology data acquisition and stimulation instruments
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License: GPL-3+ and LGPL-3+
Debian package not available
Language: C, C++
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Trellis-Neuro is an Open Source, multi-platform application suite for
interfacing with neurophysiology data acquisition and stimulation
instruments. It is based on the eXtensible Instrument Processing
Protocol (XIPP), QT 4, and C/C++.
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