Summary
Electrophysiology
pacchetti Debian Science per l'elettrofisiologia
Questo metapacchetto installa i pacchetti Debian che potrebbero
essere utili per scienziati che fanno ricerca neuroscientifica basata
sull'elettrofisiologia.
La selezione dei pacchetti è mirata alle applicazioni di tecniche di
analisi. Gli sviluppatori dei metodi possono prendere in considerazione i
metapacchetti science-statistics, science-imageanalysis,
science-numericalcomputation, med-imaging e med-imaging-dev per una varietà
di software aggiuntivi che possono essere utili per la ricerca
elettrofisiologica.
Description
For a better overview of the project's availability as a Debian package, each head row has a color code according to this scheme:
If you discover a project which looks like a good candidate for Debian Science
to you, or if you have prepared an unofficial Debian package, please do not hesitate to
send a description of that project to the Debian Science mailing list
Links to other tasks
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Debian Science Electrophysiology packages
Official Debian packages with high relevance
libdrawtk-dev
??? missing short description for package libdrawtk-dev :-(
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Versions of package libdrawtk-dev |
Release | Version | Architectures |
jessie | 2.0-2.1 | amd64,armel,armhf,i386 |
Debtags of package libdrawtk-dev: |
devel | lang:c, library |
interface | x11 |
role | devel-lib, documentation, examples, program |
science | plotting |
uitoolkit | sdl |
use | viewing |
x11 | application |
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License: DFSG free
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libgdf-dev
libreria di IO per GDF - libreria di sviluppo
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Versions of package libgdf-dev |
Release | Version | Architectures |
jessie | 0.1.2-2 | amd64,armel,armhf,i386 |
stretch | 0.1.2-2 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
buster | 0.1.2-2.1 | amd64,arm64,armhf,i386 |
bullseye | 0.1.3-8 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bookworm | 0.1.3-11 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
trixie | 0.1.3-11.1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
sid | 0.1.3-11.1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
Debtags of package libgdf-dev: |
devel | library |
role | devel-lib |
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License: DFSG free
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GDF (General Dataformat for Biosignals, formato di dati generico per
biosegnali) è pensato per fornire un'archiviazione generica per segnali
biologici come EEG, ECG, MEG, ecc.
Questo pacchetto fornisce i file header.
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sigviewer
visualizzatore con GUI per segnali biologici come EEG, EMG e ECG
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Versions of package sigviewer |
Release | Version | Architectures |
buster | 0.6.2-2 | amd64,arm64,armhf,i386 |
stretch | 0.5.1+svn556-5 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
bullseye | 0.6.4-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
jessie | 0.5.1+svn556-4 | amd64,armel,armhf,i386 |
bookworm | 0.6.4-3 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
trixie | 0.6.4-3 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
sid | 0.6.4-3 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
Debtags of package sigviewer: |
interface | x11 |
role | program |
uitoolkit | qt |
use | viewing |
x11 | application |
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License: DFSG free
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SigViewer è un software di visualizzazione e valutazione per dati di
segnali biomedici. Si basa sulla libreria biosig4c++ che gestisce svariati
formati di dati (inclusi EDF, BDF, GDF, BrainVision, BCI2000, CFWB,
HL7aECG, SCP_ECG (EN1064), MFER, ACQ, CNT(Neuroscan), DEMG, EGI, EEG1100,
FAMOS, SigmaPLpro, TMS32). L'elenco completo dei formati di file gestiti è
disponibile su:
http://pub.ist.ac.at/~schloegl/biosig/TESTED .
Oltre a visualizzare i segnali biologici, SigViewer permette la creazione
di annotazioni per selezionare artefatti o eventi specifici.
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Official Debian packages with lower relevance
aghermann
gestore di esperimenti relativi alla ricerca sul sonno
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Versions of package aghermann |
Release | Version | Architectures |
sid | 1.1.2-5 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
trixie | 1.1.2-5 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bookworm | 1.1.2-3 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bullseye | 1.1.2-3 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
buster | 1.1.2-2 | amd64,arm64,armhf,i386 |
stretch | 1.1.2-1 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
jessie | 1.0.2-1 | amd64,armel,armhf,i386 |
Debtags of package aghermann: |
uitoolkit | gtk |
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License: DFSG free
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Aghermann è un programma progettato sulla base di un flusso di lavoro
comune nelle ricerche sul sonno, completo di funzionalità di punteggio,
disegno di sottopixel cairo su schermo o su file, profili PSD ed EEG
Microcontinuity, analisi delle componenti indipendenti, rilevamento di
artefatti e simulazione del Processo S come descritti da Achermann et al.
(1993).
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klustakwik
ordinamento automatico dei campioni (spike) in grappoli
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Versions of package klustakwik |
Release | Version | Architectures |
sid | 3.0.2+ds-2 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
trixie | 3.0.2+ds-2 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bookworm | 3.0.2+ds-2 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bullseye | 3.0.2+ds-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
buster | 2.0.1-1 | amd64,arm64,armhf,i386 |
stretch | 2.0.1-1 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
jessie | 2.0.1-1 | amd64,armel,armhf,i386 |
Debtags of package klustakwik: |
role | program |
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License: DFSG free
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KlustaKwik è un programma per il clustering automatico di dati continui in
una mistura di gaussiane. Il programma è stato originariamente sviluppato
per ordinare i potenziali di azione neuronali, ma può essere applicato a
qualsiasi tipo di dati.
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libbiosig-dev
libreria di I/O per dati biomedici - file di sviluppo
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Versions of package libbiosig-dev |
Release | Version | Architectures |
bullseye | 2.1.2-4 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
stretch | 1.3.0-2.2 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
jessie | 1.3.0-2 | amd64,armel,armhf,i386 |
buster | 1.9.3-2 | amd64,arm64,armhf,i386 |
sid | 2.6.1-1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
trixie | 2.6.1-1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bookworm | 2.5.0-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
Debtags of package libbiosig-dev: |
devel | examples, library |
role | devel-lib |
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License: DFSG free
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BioSig è una libreria per accedere a file in svariati formati di dati
biomedici (inclusi EDF, BDF, GDF, BrainVision, BCI2000, CFWB, HL7aECG,
SCP_ECG (EN1064), MFER, ACQ, CNT(Neuroscan), DEMG, EGI, EEG1100,
FAMOS, SigmaPLpro, TMS32). L'elenco completo dei formati di file gestiti è
disponibile all'indirizzo http://pub.ist.ac.at/~schloegl/biosig/TESTED .
Questo pacchetto fornisce i file header e la libreria statica.
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libeegdev-dev
Biosignal acquisition device library (Development files)
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Versions of package libeegdev-dev |
Release | Version | Architectures |
sid | 0.2-9 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
stretch | 0.2-3.1 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
buster | 0.2-4 | amd64,arm64,armhf,i386 |
bullseye | 0.2-5 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bookworm | 0.2-6 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
trixie | 0.2-9 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
jessie | 0.2-3.1 | amd64,armel,armhf,i386 |
Debtags of package libeegdev-dev: |
devel | library |
role | devel-lib |
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License: DFSG free
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eegdev is a library that provides a unified interface for accessing various
EEG (and other biosignals) acquisition systems. This interface has been
designed to be both flexible and efficient. The device specific part is
implemented by the means of plugins which makes adding new device backend
fairly easy even if the library does not support them yet officially.
The core library not only provides to users a unified and consistent
interface to the acquisition device but it also provides many
functionalities to the device backends (plugins) ranging from configuration
to data casting and scaling making writing new device backend an easy task.
This library is particularly useful to handle the acquisition part of a
Brain Computer Interface (BCI) or any realtime multi-electrode acquisition
in neurophysiological research.
This package contains the files needed to compile and link programs which
use eegdev. It provides also the headers needed to develop new device
plugins. The manpages and examples are shipped in this package.
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librtfilter-dev
realtime digital filtering library (development files)
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Versions of package librtfilter-dev |
Release | Version | Architectures |
stretch | 1.1-4 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
jessie | 1.1-4 | amd64,armel,armhf,i386 |
bookworm | 1.1-4 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
trixie | 1.1-4 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
sid | 1.1-4 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bullseye | 1.1-4 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
buster | 1.1-4 | amd64,arm64,armhf,i386 |
Debtags of package librtfilter-dev: |
devel | lang:c, library |
field | biology, biology:bioinformatics |
role | devel-lib, documentation, examples |
science | calculation |
use | filtering |
works-with | audio, biological-sequence |
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License: DFSG free
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rtfilter is a library that provides a set of routines implementing realtime
digital filter for multichannel signals (i.e. filtering multiple signals
with the same filter parameters). It implements FIR, IIR filters and
downsampler for float and double data type (both for real and complex
valued signal). Additional functions are also provided to design few usual
filters: Butterworth, Chebyshev, windowed sinc, analytical filter...
One of the main differences from other libraries providing digital signal
processing is that the filter functions have been specifically designed and
optimized for multichannel signals (from few channels to several hundred).
This package contains the files needed to compile and link programs which
use rtfilter.
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libxdffileio-dev
libreria per leggere/scrivere i formati di file di dati da EEG (file di sviluppo)
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Versions of package libxdffileio-dev |
Release | Version | Architectures |
sid | 0.3-4 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bookworm | 0.3-4 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
stretch | 0.3-1 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
trixie | 0.3-4 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
jessie | 0.3-1 | amd64,armel,armhf,i386 |
buster | 0.3-2.1 | amd64,arm64,armhf,i386 |
bullseye | 0.3-4 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
Debtags of package libxdffileio-dev: |
devel | library |
role | devel-lib |
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License: DFSG free
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xdffileio è una libreria che fornisce un'interfaccia unificata per scrivere
e leggere vari formati di file per segnali biologici in tempo reale (cioè
in streaming). È stata progettata per fornire un'interfaccia flessibile,
coerente e generica per tutti i formati di file supportati, minimizzando al
contempo il costo delle chiamate alle funzioni: le operazioni più pesanti
(fare il cast del tipo, scalare e formattare) sono scaricate in un thread
separato. Questo disegno progettuale la rende particolarmente adatta per
l'uso diretto in un ciclo di acquisizione dati (come in registrazioni
elettrofisiologiche o in interfacce computer-cervello (BCI)).
La generalità dell'interfaccia rende banali varie operazioni come la
trasformazione di un file registrato o la sua conversione in un altro
formato di file. xdffileio attualmente gestisce i formati di file EDF, BDF,
GDF1 e GDF2 e altri verranno aggiunti in futuro.
Questo pacchetto contiene i file necessari per compilare e fare il link
per programmi che usano xdiffileio.
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python3-bioxtasraw
process biological small angle scattering data
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Versions of package python3-bioxtasraw |
Release | Version | Architectures |
sid | 2.3.0-1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64 |
bookworm | 2.1.1-4 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el |
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License: DFSG free
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BioXTAS RAW is a GUI based, Python program for reduction and
analysis of small-angle X-ray solution scattering (SAXS) data.
The package is designed for biological SAXS data.
BioXTAS RAW provides an alternative to closed source programs
such as Primus and Scatter for primary data analysis. Because
it can calibrate, mask, and integrate images it also provides
an alternative to synchrotron beamline pipelines that scientists
can install on their own computers and use both at home and at
the beamline.
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python3-neo
Python IO library for electrophysiological data formats
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Versions of package python3-neo |
Release | Version | Architectures |
trixie | 0.13.4-1 | all |
sid | 0.13.4-1 | all |
bookworm | 0.11.1-1 | all |
bullseye | 0.9.0-1 | all |
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License: DFSG free
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NEO stands for Neural Ensemble Objects and is a project to provide common
classes and concepts for dealing with electro-physiological (in vivo
and/or simulated) data to facilitate collaborative software/algorithm
development. In particular Neo provides: a set a classes for data
representation with precise definitions, an IO module with a simple API,
documentation, and a set of examples.
NEO offers support for reading data from numerous proprietary file formats
(e.g. Spike2, Plexon, AlphaOmega, BlackRock, Axon), read/write support for
various open formats (e.g. KlustaKwik, Elan, WinEdr, WinWcp, PyNN), as well
as support common file formats, such as HDF5 with Neo-structured content
(NeoHDF5, NeoMatlab).
Neo's IO facilities can be seen as a pure-Python and open-source Neuroshare
replacement.
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science-dataacquisition
pacchetti Debian Science per acquisizione di dati
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Versions of package science-dataacquisition |
Release | Version | Architectures |
stretch | 1.7 | all |
jessie | 1.4 | all |
sid | 1.14.6 | all |
buster | 1.10 | all |
bullseye | 1.14.2 | all |
trixie | 1.14.6 | all |
bookworm | 1.14.5 | all |
Debtags of package science-dataacquisition: |
role | metapackage |
suite | debian |
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License: DFSG free
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Questo metapacchetto installa i pacchetti Debian Science relativi
all'acquisizione dei dati. Potrebbe essere utile in diversi campi
scientifici (come lo sono per esempio science-viewing e
science-typesetting).
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science-neuroscience-modeling
pacchetti per Debian Science per modellazione di sistemi neurali
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Versions of package science-neuroscience-modeling |
Release | Version | Architectures |
trixie | 1.14.6 | all |
jessie | 1.4 | all |
stretch | 1.7 | all |
buster | 1.10 | all |
bullseye | 1.14.2 | all |
bookworm | 1.14.5 | all |
sid | 1.14.6 | all |
Debtags of package science-neuroscience-modeling: |
role | metapackage |
suite | debian |
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License: DFSG free
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Questo metapacchetto installa i pacchetti Debian che possono essere utili
per gli scienziati interessati alla modellazione di sistemi neurali reali a
vari livelli (dal singolo neurone fino a reti complesse).
La selezione di pacchetti è indirizzata all'applicazione di tecniche di
simulazione. Gli sviluppatori di metodi devono far riferimento ai
metapacchetti science-statistics, science-imageanalysis,
science-numericalcomputation, med-imaging e med-imaging-dev per una varietà
di software aggiuntivo che può essere utile nella ricerca in neuroscienza.
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stimfit
programma per visualizzare e analizzare dati elettrofisiologici
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Versions of package stimfit |
Release | Version | Architectures |
bookworm | 0.16.0-1.2 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
jessie | 0.13.19-1 | amd64,armel,armhf,i386 |
buster | 0.15.8-1 | amd64,arm64,armhf,i386 |
sid | 0.16.0-1.2 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bullseye | 0.16.0-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
Debtags of package stimfit: |
role | program |
uitoolkit | wxwidgets |
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License: DFSG free
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Stimfit è un programma libero, veloce e semplice per visualizzare e
analizzare dati elettrofisiologici. Ha una shell Python incorporata che
permette di estendere le funzionalità del programma usando librerie
numeriche come NumPy e SciPy.
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Packaging has started and developers might try the packaging code in VCS
eegview
Software to display EEG data in realtime
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Versions of package eegview |
Release | Version | Architectures |
VCS | 0.0-1 | all |
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License: GPL-3+
Debian package not available
Version: 0.0-1
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This software allows one to display EEG signal in realtime as well as
record them. It is the minimal recording panel needed to do simple
experiment.
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libmcpanel-dev
Library to display multichannel data in realtime (Developement files)
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Versions of package libmcpanel-dev |
Release | Version | Architectures |
VCS | 0.0-1 | all |
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License: GPL-3+
Debian package not available
Version: 0.0-1
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This package provides a library written in C implementing a set of widgets
designed to view in realtime multichannels signals. Despite it has been
initially design to view signals coming from a BIOSEMI Activetwo EEG
system, it is totally system agnostic and any user of other system might
find it useful.
This package contains the files needed to compile and link programs which
use mcpanel
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IO library for electrophysiological data formats in Python
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License: BSD
Debian package not available
Language: Python
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NEO stands for Neural Ensemble Objects and is a project to provide common
class names and concepts for dealing with electro-physiological (in vivo
and/or simulated) data with the aim of getting OpenElectrophy, NeuroTools,
G-node and maybe other projects with similar goals more close together.
In particular Neo provides:
- a set a classes with precise definitions
- an IO module that offer a simple API that fit many formats
- documentation.
- a set of examples like a format convertor
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openelectrophy
data analysis GUI for intra- and extra-cellular recordings
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Versions of package openelectrophy |
Release | Version | Architectures |
VCS | 0.0.svn143 | all |
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License: free
Debian package not available
Version: 0.0.svn143
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This package provides the startup script for the OpenElectrophy GUI.
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Unofficial packages built by somebody else
eeglab
toolbox for processing and visualization of electrophysiological data
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License: GPL-2+
Language: C, Matlab/Octave
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EEGLAB is an interactive Matlab toolbox for processing continuous and
event-related EEG, MEG and other electrophysiological data
incorporating independent component analysis (ICA), time/frequency
analysis, artifact rejection, event-related statistics, and several
useful modes of visualization of the averaged and single-trial data.
Please register by following this link if you are using eeglab.
Please cite:
Delorme A and Makeig S:
EEGLAB: an open source toolbox for analysis of single-trial EEG dynamics
(2004)
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No known packages available but some record of interest (WNPP bug)
Data Acquisition and Neural Spike Processing Software
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License: GPL-2+
Debian package not available
Language: C
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BlueSpike is an electrophysiology tool to perform real-time data
acquisition, visualization and sorting of neuronal spikes. It
continuously acquires data every 1 ms and realizes digital signal
processing on retrieved data. Contains four components:
- KernelSpike: a kernel module.
- SpikeViewever
- SpikeSorter
- Channel Reviewer
Please cite:
Mehmet Kocaturk <kocaturk@gmail.com> et al.:
Real-time experimental interface for electrophysiology experiments
(2010)
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tools for recording from MEAs and RT processing
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License: GPL-2+
Debian package not available
Language: C++
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Meabench is a set of interacting linux programs for recording data
from MEAs and real time processing. It can be used to acquire and
visualize data from MultiChannel Systems multi-electrode array
hardware in real time. On-line spike detection is available, as well
as suppression of artifacts induced by 60 Hz pickup and by
stimulation. A growing number of small utilities for data analysis is
included with the source code, and you can easily add your
own. Meabench provides continuous and triggered recording of raw
electrode data as well as extracted spike data. Meabench is very
suitable for real-time feedback stimulation, since roundtrip times
from pre-amplifier to stimulator is less than 200 ms worst-case (less
than 50 ms average).
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framework for closed-loop neurophysiological experiments
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License: GPL-2+
Debian package not available
Language: C++
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RELACS is designed as an framework for closed-loop experiments that
may considerably speed up this traditional approach and in addition
offers novel experimental possibilities. In a closed-loop experiment
a stimulus is presented, the resulting response is immediately
analyzed, and properties of the next stimulus (e.g. mean
intensity) are adjusted as needed.
RELACS comes with an extensive set of data-analysis functions. The
functions are implemented in C++ to allow fast and memory efficient
data-analysis as it is required for closed-loop experiments:
- Basic statistics (e.g. mean, standard deviation)
- Spectral analysis: power spectrum, transfer function, coherence
- Linear and nonlinear fits (Levenberg-Marquardt and Simplex)
- Peak detection
- Histograms, interpolation
- Stimulus generation: pulse, saw tooth, band-pass filtered white
noise, Ornstein-Uhlenbeck noise
- Firing rates: mean, binned, convolved with kernels (e.g. rectangle,
triangle, Gaussian)
- Interspike intervals: histogram, CV, serial correlation, etc.
- Spike timing precision: vector strength, reliability, correlation,
synchrony etc.
RELACS plugin infrastructure allows to adapt it to specific hardware
drivers and they allow you to implement research protocols, filters,
spike detectors, etc.
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GUI application for navigating, analyzing and visualizing electrophysiological datasets
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License: promised MIT or BSD-3
Debian package not available
Language: Python
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Based on the neo framework, it works with a wide variety of data
formats. Plugin interfaces allow for rapid extension with custom
analyses.
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No known packages available
chronus
platform for analysis of neural signals
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License: GPL-2+
Debian package not available
Language: C, Matlab/Octave
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Chronux is a Matlab toolbox for signal processing of neural time
series data, several specialized mini-packages for spike sorting,
local regression, audio segmentation and other tasks. It also
includes a graphical user interface (GUI). The current version of
the GUI contains a number of features specialised to the analysis of
electroencephalography (EEG) data. The eventual aim is to provide
domain specific user interfaces (UIs) for each experimental modality,
along with corresponding data management tools.
Please register by following this link if you are using chronus.
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mclust
Matlab toolbox for clustering of electrophysiologic recordings
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License: non-DFSG (restrictions: modifications, attribution)
Debian package not available
Language: C/C++, Matlab
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MClust is a toolbox which enables a user to perform automated and
manual clustering on single-electrode, stereotrode, and tetrode
recordings. It allows manual corrections to automated clustering
results. It outputs t-files, which contain (after a header) a list
of timestamps in binary format. Timestamps are 32-bit longs at a
resolution of 10 timestamps/ms.
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neurodata
suite to analyze data acquired from electrophysiology experiments
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License: GPL-2+
Debian package not available
Language: C++, Octave/Matlab, Perl
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Currently, neurodata has an Octave/MATLAB program to analyze
electroneurogram traces of coupled oscillators, and a Perl library
for the analysis of voltage trace data.
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nspike
electrophysiological and behavioral data collection
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License: GPL-2+
Debian package not available
Language: C++
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This project is a electrophysiological and behavioral data collection
program that can distribute data collection tasks across multiple
machines. It is designed to interface with the NSpike hardware
system.
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patchclamp
recorder of single-channel and whole-cell currents
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License: GPL-2+
Debian package not available
Language: C/C++
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The ultimate aim is to create an extremely user-friendly software to
perform the most common tasks of recording single channels and
whole-cell currents
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pymeg
suite for analysis of magnetoencephalography (MEG) data
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License: GPL-3
Debian package not available
Language: Python
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PyMEG is a project in Python to do various neuroimaging processing
with magnetoencephalography (MEG) data. The purpose of this project,
is to create a suite of functions to do MEG analysis in Python.
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qrtailab
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License: LGPL-2
Debian package not available
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QRtaiLab is a QT-based port of the software scope xrtailab of the
RTAI project. It can be used as virtual oscilloscope and monitoring
application for interacting with the real-time external.
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rtxi
real-time data acquisition and control applications in biological research
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License: GPL-2+
Debian package not available
Language: C++
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The Real-Time eXperiment Interface (RTXI) is a collaborative
open-source software development project aimed at producing a
real-time Linux based software system for hard real-time data
acquisition and control applications in biological research.
Core functionality of RTXI gets extended via plugins, such as
- Data Recorder
- Virtual Dendrite
- Spike-triggered Average
- Phase Response Curve
- Signal processing
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spike
spike train analysis toolbox
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License: BSD-3 and Academic Free License
Debian package not available
Language: C++, Octave/Matlab
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This toolbox implements several information-theoretic spike train analysis
techniques. This implementation behaves like a typical MATLAB toolbox, but
the underlying computations are coded in C and optimized for efficiency.
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trellis-neuro
interface to neurophysiology data acquisition and stimulation instruments
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License: GPL-3+ and LGPL-3+
Debian package not available
Language: C, C++
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Trellis-Neuro is an Open Source, multi-platform application suite for
interfacing with neurophysiology data acquisition and stimulation
instruments. It is based on the eXtensible Instrument Processing
Protocol (XIPP), QT 4, and C/C++.
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