Summary

The Debian Science Pure Blend contains 1816 packages which are grouped by metapackages. Each metapackage will cause the installation of packages for a specific topic. The following table lists the metapackages of Debian Science

Tasks page

This is a list of the Tasks Debian Science is made of:

Brain-computer interface
Biology
Chemistry
Data acquisition
Data acquisition development
Data management
Devices
Distributed computing
Economics
Electrophysiology
Engineering
Engineering-dev
Financial engineering
Geography
Geometry
High energy physics
High energy physics (devel)
Image analysis
Image analysis development
Linguistics
Logic
Machine learning
Mathematics
Mathematics-dev
Meteorology
Meteorology-dev
Nanoscale physics
Nanoscale physics development
Cognitive neuroscience
Neuroscience datasets
Modeling of neural systems
Numerical computation
Physics
Physics-dev
Presentation
Psychophysics
Robotics
Robotics-dev
Simulations
Social
Statistics
Tools
Typesetting
Viewing
Viewing-dev
Workflow

Brain-computer interface - Debian Science Brain-computer interface packages

Debian Science packages for the design and use of brain-computer interface (BCI) -- direct communication pathway between a brain and an external device. BCIs are often aimed at assisting, augmenting or repairing human cognitive or sensory-motor functions.

The selection of packages is targeting the complete frameworks for the design of BCI systems. Often such systems rely on external presentation, data collection and analysis software which could be found in science-neuroscience-cognitive, science-dataacquisition, data-machine-learning metapackages.

Packaging has started and developers might try the packaging code in VCS

Emokit: Emotiv EPOC headset Python interface
Pybci: Brain Computer Interface module for Brain Vision Recorder
Pyff: Brain Computer Interface (BCI) framework

No known packages available but some record of interest (WNPP bug)

Openvibe: platform for the design, test and use of BCI

No known packages available

Bci2000: platform for brain-computer interface systems
Bcpy2000: platform for brain-computer interface systems

Biology - Debian Science Biology packages

This metapackage will install Debian Science packages related to Biology. You might also be interested in the field::biology debtag.

This metapackage makes use of the packages med-bio and med-bio-dev (for development of biological applications) which are maintained by Debian Med - another Debian Pure Blend. If you are a biologist you are most probably interested in the Debian Med project which deals with biology and medicine in much more detail then the more general Debian Science.

Official Debian packages with high relevance

Bauble: ??? missing short description for package bauble :-(
Critterding: Evolving Artificial Life
Med-bio: Debian Med bioinformatics packages
Nmodl: Code generation engine for the NEURON modeling language
Nrn-mod2c: NMODL to C converter for CoreNEURON

Official Debian packages with lower relevance

Libinterviews-dev: InterViews 3.1 for the NEURON simulator
Med-bio-dev: Debian Med packages for development of bioinformatics applications
Python3-nmodl: Python support for the NEURON modeling language engine
Siconos: modeling and simulation of nonsmooth dynamical systems (simulation runner tool)
Siconos-mechanics-tools: modeling and simulation of nonsmooth dynamical systems (mechanics tools)

Packaging has started and developers might try the packaging code in VCS

Genesis: general-purpose neural simulator

Chemistry - Debian Science Chemistry packages

This metapackage will install Debian Science packages related to Chemistry. You might also be interested in the field::chemistry debtag and, depending on your focus, in the education-chemistry metapackage.

Official Debian packages with high relevance

Adun.app: Molecular Simulator for GNUstep (GUI)
Apbs: Adaptive Poisson Boltzmann Solver
Atomes: atomic-scale 3D modeling toolbox
Avogadro: Molecular Graphics and Modelling System
Bkchem: Chemical structures editor
Bodr: Blue Obelisk Data Repository
Chemeq: Parser for chemical formula and equilibria
Chemical-mime-data: chemical MIME and file type support for desktops
Chemical-structures: web service providing molecular structures in open formats
Chemtool: chemical structures drawing program
Cp2k: Ab Initio Molecular Dynamics
Drawxtl: crystal structure viewer
Easychem: Draw high-quality molecules and 2D chemical formulas
Feff85exafs: Open Source theoretical EXAFS calculations
Gabedit: graphical user interface to Ab Initio packages
Galculator: scientific calculator
Gamgi: General Atomistic Modelling Graphic Interface (GAMGI)
Garlic: visualization program for biomolecules
Gausssum: parse and display Gaussian, GAMESS, and etc's output
Gchempaint: 2D chemical structures editor for the GNOME2 desktop
Gcrystal: lightweight crystal structures visualizer
Gcu-bin: GNOME chemistry utils (helper applications)
Gcu-plugin: ??? missing short description for package gcu-plugin :-(
Gdis: molecular and crystal model viewer
Gdpc: visualiser of molecular dynamic simulations
Gelemental: Periodic Table viewer
Ghemical: GNOME molecular modelling environment
Gperiodic: periodic table application
Gromacs: Molecular dynamics simulator, with building and analysis tools
Gromacs-mpich: Molecular dynamics sim, binaries for MPICH parallelization
Gromacs-openmpi: Molecular dynamics sim, binaries for OpenMPI parallelization
Jmol: Molecular Viewer
Kalzium: periodic table and chemistry tools
Katomic: atomix puzzle game
Libcdk-java: Chemistry Development Kit (CDK) Java libraries
Mmass: Mass spectrometry tool for proteomics
Mmass-modules: Mass spectrometry tool for proteomics - extension modules
Mopac7-bin: Semi-empirical Quantum Chemistry Library (binaries)
Mpqc: Massively Parallel Quantum Chemistry Program
Mpqc-support: Massively Parallel Quantum Chemistry Program (support tools)
Msxpertsuite: mass spectrometry software suite - metapackage
Openbabel: Chemical toolbox utilities (cli)
Openfoam: Open source toolbox for Computational Fluid Dynamics (CFD) - binaries
Pdb2pqr: Preparation of protein structures for electrostatics calculations
Psi3: Quantum Chemical Program Suite
Pyfai: Fast Azimuthal Integration scripts
Pymol: Molecular Graphics System
Python3-mpiplus: Python GPU framework for alchemical free energy calculations (Python 3)
Python3-openbabel: Chemical toolbox library (Python bindings)
Python3-pymzml: mzML mass spectrometric data parsing (Python 3.x)
Qutemol: interactive visualization of macromolecules
Rasmol: visualization of biological macromolecules
Tandem-mass: mass spectrometry software for protein identification
V-sim: Visualize atomic structures
Viewmol: graphical front end for computational chemistry programs
Xbs: 3-d models and movies of molecules
Xdrawchem: Chemical structures and reactions editor
Xmakemol: program for visualizing atomic and molecular systems
Xmakemol-gl: program for visualizing atomic and molecular systems (OpenGL)

Official Debian packages with lower relevance

Gdpc-examples: example files for the gdpc program
Libcoordgen-dev: 2D coordinate generation for chemical compounds - header files
Libmaeparser-dev: Development files to parse Schrödinger Maestro files
Libschroedinger-coordgenlibs-dev: 2D coordinate generation for chemical compounds - header files
Python-pymzml-doc: mzML mass spectrometric data parsing - documentation
Python3-amp: Atomistic Machine-learning Package (python 3)
Python3-periodictable: Extensible periodic table of the elements (Python 3)
Refmac-dictionary: dictionary for macromolecular refinement and model building

Packaging has started and developers might try the packaging code in VCS

Fdmnes: calculates spectra of different spectroscopies
Molden: processing program of molecular and electronic structure
Molekel: Advanced Interactive 3D-Graphics for Molecular Sciences
Tinker: Software Tools for Molecular Design

No known packages available but some record of interest (WNPP bug)

Libegad: rational protein design library
Libint: Evaluate the integrals in modern atomic and molecular theory

No known packages available

Openchrom: process chromatographic and mass spectrometric data

Data acquisition - Debian Science data acquisition packages

This metapackage will install Debian Science packages related to data acquisition. This might be used in several sciences (as for instance science-viewing and science-typesetting).

Official Debian packages with high relevance

Clickhouse-tools: ??? missing short description for package clickhouse-tools :-(
Csvkit: command-line tools for working with CSV
Engauge-digitizer: interactively extracts numbers from bitmap graphs or maps
Filo: ??? missing short description for package filo :-(
G3data: ??? missing short description for package g3data :-(
Ghkl: diffractometer computation control application
Jaaa: audio signal generator and spectrum analyser
Libfreenect-dev: library for accessing Kinect device -- development files
Libgetdata-tools: library to read/write dirfile data - extra tools
Lxi-tools: LAN eXtensions for Instrumentation (LXI) software interface
Netcdf-bin: Programs for reading and writing NetCDF files
Open3d-gui: Transitional dummy package for open3d-viewer
Open3d-tools: Library for 3D data processing - tools
Python3-pyvisa: Python 3 bindings for Virtual Instrument Software Architecture
Python3-sardana: instrument control and data acquisition system - library
Segyio-bin: SEG-Y read/write library for seismic processing (shell utilities)
Vnlog: Toolkit to read/write/manipulate whitespace-separated ASCII logs
Xlsx2csv: convert xlsx files to csv format
Xyscan: data thief for scientists

Official Debian packages with lower relevance

Binoculars: Surface X-ray diffraction 2D detector data reduction
Gnudatalanguage: Free IDL compatible incremental compiler
Gpsd: Global Positioning System - daemon
Python3-pytango: transitional dummy package for python3-tango
Python3-streamz: build pipelines to manage continuous streams of data
Python3-taurus: Framework for scientific/industrial CLIs and GUIs - Python3
Rt-tests: Test programs for rt kernels
Tango-accesscontrol: TANGO distributed control system - accesscontrol server
Tango-db: TANGO distributed control system - database server
Tango-starter: TANGO distributed control system - starter server
Xenomai-runtime: ??? missing short description for package xenomai-runtime :-(

Packaging has started and developers might try the packaging code in VCS

Qtdmm: GUI for digital multimeter

Unofficial packages built by somebody else

Epics: Experimental Physics and Industrial Control System
Linux-image-2.6-rt: Stock Linux kernel with RT-Preempt patch
Mx-dataacquisition: data acquisition and control system

No known packages available but some record of interest (WNPP bug)

Opendap: Java Network Data Access Protocol

No known packages available

Hart: toolbox to generate DAQ Scicos-blocks for hardware
Plot-digitizer: digitize scanned plots of functional data

Data acquisition development - Debian Science data acquisition development packages

This metapackage will install Debian Science packages which are helpful to develop applications related to data acquisition. This might be used in several sciences.

Official Debian packages with high relevance

Libgetdata-dev: library to read/write dirfile data - devel files (C, C++, F77, F95)
Libgetdata-perl: library to read/write dirfile data - perl bindings
Liblog4tango-dev: ??? missing short description for package liblog4tango-dev :-(
Liblxi-dev: LAN eXtensions for Instrumentation (LXI) software interface
Libopen3d-dev: Library for 3D data processing - development headers
Libopenrefine-arithcode-java: Java implementation of arithmetic coding and PPM compression
Libopenrefine-vicino-java: near-neighbor search tool for Java
Libsdsl-dev: succinct data structure library - development files
Libtango-dev: TANGO distributed control system - development library
Libvnlog-dev: Toolkit to read/write/manipulate whitespace-separated ASCII logs
Libvnlog-perl: Toolkit to read/write/manipulate whitespace-separated ASCII logs
Mseed2sac: Convert MiniSEED time series data to SAC
Python3-aws-xray-sdk: AWS X-Ray SDK for Python 3
Python3-csvkit: public modules for csvkit (Python 3)
Python3-datacache: helpers for transparently downloading datasets
Python3-guidata: dataset manipulation GUI generator - Python 3
Python3-intake: lightweight package for finding and investigating data
Python3-open3d: Library for 3D data processing - Python 3 bindings
Python3-pygetdata: library to read/write dirfile data - Python3 bindings
Python3-pymeasure: scientific measurement library for Python
Python3-segyio: SEG-Y read/write library for seismic processing (python3 bindings)
Python3-tango: API for the TANGO control system (Python 3)
Python3-trx-python: implementation of the trx file-format for tractography data
Python3-vnlog: Toolkit to read/write/manipulate whitespace-separated ASCII logs
Python3-xrayutilities: X-rays data reduction and analysis (Python 3)

Official Debian packages with lower relevance

Libbcm2835-dev: access to GPIO and other IO functions on the Broadcom BCM 2835 chip
Python3-asciitree: Draw tree structures using (ASCII or Unicode) characters
R-cran-mi: GNU R package for Missing Data Imputation and Model Checking -- mi
R-cran-ncdf4: GNU R interface to Unidata netCDF format data files

Data management - Debian Science Data Management packages

This metapackage will install packages to assist with data management tasks, such as obtaining data from remote resources, keeping data under version control, etc.

Official Debian packages with high relevance

Datalad: ??? missing short description for package datalad :-(
Datalad-container: DataLad extension for working with containerized environments
Git-annex: manage files with git, without checking their contents into git
Hdf5-filter-plugin: external filters for HDF5: LZ4, BZip2, Bitshuffle
Hdf5-filter-plugin-blosc-serial: blocking, shuffling and lossless compression library
Hdf5-filter-plugin-zfp-serial: Compression plugin for the HDF5 library using ZFP compression
Nexus-tools: NeXus scientific data file format - applications
Plfit: fitting power-law distributions to empirical data -- interfaces
Python3-jdata: JData encoder/decoder for python 3
Python3-mdp: Modular toolkit for Data Processing
Python3-nxs: NeXus scientific data file format - Python 3 binding
Python3-pyzoltan: Wrapper for the Zoltan data management library
Virtuoso-opensource: high-performance database
Visidata: rapidly explore columnar data in the terminal

Official Debian packages with lower relevance

Libnexus-dev: NeXus scientific data file format - development libraries
Libnexus-java: NeXus scientific data file format - java libraries
Libplfit-dev: fitting power-law distributions to empirical data -- development
Python3-openpyxl: Python 3 module to read/write OpenXML xlsx/xlsm files
Python3-opentsne: t-Distributed Stochastic Neighbor Embedding algorithm
Python3-plfit: fitting power-law distributions to empirical data -- Python

Devices - Debian Science specific devices support

This task lists Debian Science packages which are dedicated to specific devices that are typically used in sciences. This might reach from scientific calculators or specific measurement devices.

Note that there is no according metapackage created since the packages might be to different to make sense to install all on one machine.

Official Debian packages with high relevance

Bossa: Atmel SAM ARM microcontroller flash programming GUI
Bossa-cli: Atmel SAM ARM microcontroller flash programming utility
Expeyes: hardware & software framework for developing science experiments
Gfm: Texas Instruments hand-helds file manipulation program for X
Tiemu: Texas Instruments calculators emulator (without GDB)
Tilem: GTK+ TI Z80 calculator emulator
Tilp2: Texas Instruments hand-helds <-> PC communication program for X

Official Debian packages with lower relevance

Libticables-dev: Texas Instruments link cables library [development files]
Libticalcs-dev: Texas Instruments calculator communication library [development files]
Libticonv-dev: Texas Instruments calculators charsets library [development files]
Libtifiles-dev: Texas Instruments calculator files library [development files]

Distributed computing - Debian Science Distributed Computing packages

This metapackage will install Debian Science packages useful for various types of distributed computing, such as grid-, cloud-, cluster- and parallel-computing.

Official Debian packages with high relevance

Dmtcp: ??? missing short description for package dmtcp :-(
Environment-modules: Modular system for handling environment variables
Globus-core: ??? missing short description for package globus-core :-(
Gridengine-client: Utilities for Grid Engine queue management
Gridengine-exec: Distributed resource management - Execution Server
Gridengine-master: Distributed resource management - Master Server
Gridengine-qmon: Graphical utilities for Grid Engine queue management
Htcondor: transitional dummy package
Ipython3: Enhanced interactive Python 3 shell
Mpich: ??? missing short description for package mpich :-(
Mpich2python: ??? missing short description for package mpich2python :-(
Nordugrid-arc-client: ARC command line clients
Openmpi-bin: high performance message passing library -- binaries
Openmpipython: ??? missing short description for package openmpipython :-(
Python3-scoop: Python3 library for concurrent parallel programming

Official Debian packages with lower relevance

Coop-computing-tools: cooperative computing tools
Hpcc: HPC Challenge benchmark
Python3-mpi4py: bindings of the Message Passing Interface (MPI) standard

No known packages available

Psom: pipeline system for Octave and Matlab

Economics - Debian Science Economics packages

This metapackage will install Debian Science packages useful for economics and econometrics. It includes user-friendly programs for simulating and estimating macro-economic and micro-economic models. It also provides computing environments which can solve a wide range of problems typically encountered in economic research. These environments provide functionalities similar to those of popular non-free systems (such as MATLAB, Mathematica, Stata or SAS).

Official Debian packages with high relevance

Dynare: platform for handling a wide class of economic models
Gretl: GNU Regression, Econometric & Time-Series Library
Octave-econometrics: econometrics functions for Octave
Python3-statsmodels: Python3 module for the estimation of statistical models
R-base: GNU R statistical computation and graphics system
R-cran-aer: Applied Econometrics with R
R-cran-bayesm: GNU R package for Bayesian inference
R-cran-dynlm: GNU R package for dynamic linear models and time series regression
R-cran-fimport: GNU R package for financial engineering -- fImport
R-cran-fnonlinear: GNU R package for financial engineering -- fNonlinear
R-cran-foreign: GNU R package to read/write data from other stat. systems
R-cran-funitroots: GNU R package for financial engineering -- fUnitRoots
R-cran-gmm: GNU R generalized method of moments and generalized empirical likelihood
R-cran-hmisc: GNU R miscellaneous functions by Frank Harrell
R-cran-isocodes: GNU R package providing tables for several ISO codes
R-cran-lme4: GNU R package for linear mixed effects model fitting
R-cran-mcmcpack: R routines for Markov chain Monte Carlo model estimation
R-cran-mfilter: GNU R package providing miscellaneous time series filters
R-cran-plm: GNU R estimators and tests for panel data econometrics
R-cran-pwt: GNU R package for the Penn World Tables (version 5.6 to 7.1)
R-cran-pwt8: GNU R package for the Penn World Tables (version 8.x)
R-cran-pwt9: GNU R package for the Penn World Tables (version 9.x)
R-cran-rdbnomics: access to hundreds of millions data series from DBnomics API
R-cran-rsdmx: GNU R package for the Statistical Data and Metadata Exchange (SDMX) framework
R-cran-tseries: GNU R package for time-series analysis and comp. finance
R-cran-urca: GNU R package providing unit root and cointegration tests
R-cran-wdi: GNU R package for accessing the World Development Indicators

Official Debian packages with lower relevance

Elpa-ess: Emacs mode for statistical programming and data analysis
Science-financial: Debian Science financial engineering and computational finance
Science-mathematics: Debian Science Mathematics packages
Science-numericalcomputation: Debian Science Numerical Computation packages
Science-social: ??? missing short description for package science-social :-(
Science-statistics: Debian Science Statistics packages

Debian packages in contrib or non-free

Dynare-matlab: MATLAB support for Dynare
X13as: seasonal adjustment software for modeling time series

No known packages available

Dolo: Economic modelling in Python
Minsky: system dynamics program with additional features for economics
Netlogo: multi-agent programmable modeling environment
Pksfc: R package to simulate Post-Keynesian Stock-Flow Consistent Models
Python3-pandasdmx: python- and pandas-powered client for statistical data and metadata exchange
Python3-quantecon: high performance, open source Python code library for economics
R-cran-ecdat: R data sets for econometrics
R-cran-pdfetch: Fetch Economic and Financial Time Series Data from Public Sources
R-cran-vars: VAR, SVAR and SVEC Models in R
R-other-bmr: bayesian Macroeconometrics in R
R-other-gecon: solver for large scale dynamic general equilibrium models
Recs: MATLAB solver for DSGE models
Repast-hpc: agent-based modeling for large-scale distributed computing platforms
Repast-symphony: platform for extremely flexible models of interacting agents

Electrophysiology - Debian Science packages for Electrophysiology

This metapackage will install Debian packages which might be useful for scientists doing electrophysiology-based neuroscience research.

The selection of packages is targeting the application of analysis techniques. Methods developers are referred to the science-statistics, science-imageanalysis, science-numericalcomputation, med-imaging, and med-imaging-dev metapackages for a variety of additional software that might be useful for electrophysiology research.

Official Debian packages with high relevance

Libdrawtk-dev: ??? missing short description for package libdrawtk-dev :-(
Libgdf-dev: IO library for the GDF -- development library
Sigviewer: GUI viewer for biosignals such as EEG, EMG, and ECG

Official Debian packages with lower relevance

Aghermann: Sleep-research experiment manager
Klustakwik: automatic sorting of the samples (spikes) into clusters
Libbiosig-dev: I/O library for biomedical data - development files
Libeegdev-dev: Biosignal acquisition device library (Development files)
Librtfilter-dev: realtime digital filtering library (development files)
Libxdffileio-dev: Library to read/write EEG data file formats (development files)
Python3-bioxtasraw: process biological small angle scattering data
Python3-neo: Python IO library for electrophysiological data formats
Science-dataacquisition: Debian Science data acquisition packages
Science-neuroscience-modeling: Debian Science packages for modeling of neural systems
Stimfit: Program for viewing and analyzing electrophysiological data

Packaging has started and developers might try the packaging code in VCS

Eegview: Software to display EEG data in realtime
Libmcpanel-dev: Library to display multichannel data in realtime (Developement files)
Neo: IO library for electrophysiological data formats in Python
Openelectrophy: data analysis GUI for intra- and extra-cellular recordings

Unofficial packages built by somebody else

Eeglab: toolbox for processing and visualization of electrophysiological data

No known packages available but some record of interest (WNPP bug)

Bluespike: Data Acquisition and Neural Spike Processing Software
Meabench: tools for recording from MEAs and RT processing
Relacs: framework for closed-loop neurophysiological experiments
Spykeview: GUI application for navigating, analyzing and visualizing electrophysiological datasets

No known packages available

Chronus: platform for analysis of neural signals
Mclust: Matlab toolbox for clustering of electrophysiologic recordings
Neurodata: suite to analyze data acquired from electrophysiology experiments
Nspike: electrophysiological and behavioral data collection
Patchclamp: recorder of single-channel and whole-cell currents
Pymeg: suite for analysis of magnetoencephalography (MEG) data
Qrtailab: Qt-GUI for RTAI
Rtxi: real-time data acquisition and control applications in biological research
Spike: spike train analysis toolbox
Trellis-neuro: interface to neurophysiology data acquisition and stimulation instruments

Engineering - Debian Science Engineering packages

This metapackage is part of the Debian Pure Blend "Debian Science" and installs packages related to Engineering.

Please note that there is an additional package engineering-dev which depends from packages which are useful to develop engineering related software.

Official Debian packages with high relevance

Calculix-ccx: Three-Dimensional Structural Finite Element Program
Calculix-cgx: Calculix cgx is a 3-dimensional pre- and post-processor for fem
Cba: Continuous Beam Analysis
Cgns-convert: CFD General Notation System - Conversion tools
Code-aster: ??? missing short description for package code-aster :-(
Code-aster-gui: Graphical user interface for Code_Aster - client
Code-saturne: General purpose Computational Fluid Dynamics (CFD) software
Dime: DXF Import, Manipulation, and Export programs
Eficas: ??? missing short description for package eficas :-(
Feel++-apps: ??? missing short description for package feel++-apps :-(
Fenics: Automated Solution of Differential Equations
Freecad: Extensible Open Source CAx program
Gerris: Fluid Flow Solver
Getdp: general environment for the treatment of discrete problems
Gmsh: Three-dimensional finite element mesh generator
Hdfview: ??? missing short description for package hdfview :-(
Libadios-bin: ADIOS Adaptable IO system for simulations - binaries
Librecad: Computer-aided design (CAD) system
Libsilo-bin: Utilities to manipulate libsilo files
Lxi-tools: LAN eXtensions for Instrumentation (LXI) software interface
Netgen: Automatic 3d tetrahedral mesh generator
Oce-draw: ??? missing short description for package oce-draw :-(
Openfoam: Open source toolbox for Computational Fluid Dynamics (CFD) - binaries
Persalys: GUI for uncertainty treatment and variabilities management
Python3-admesh: Python bindings for the ADMesh (Python 3)
Python3-dolfin: Base Python interface for DOLFIN (Python 3)
Python3-escript: Escript/Finley finite elements Python3 system (with OpenMP)
Python3-escript-mpi: (OpenMP + MPI)
Python3-fiat: tabulation of finite element function spaces (Python 3)
Python3-openturns: Python3 front-end of OpenTURNS (aka TUI)
Python3-persalys: GUI for uncertainty treatment (Python bindings)
Python3-silo: Python3 interface to the SILO Scientific I/O library
Sailcut: Sail design and plotting software
Scram: Probabilistic Risk Analysis Tool
Sfc: ??? missing short description for package sfc :-(
Solvespace: Parametric 2d/3d CAD
Syrthes: Transient thermal simulations in complex solid geometries
Tetgen: Quality Tetrahedral Mesh Generator
Z88: Finite Element Analysis Program - runtime

Official Debian packages with lower relevance

Ann-tools: Approximate Nearest Neighbor Searching library (tools)
Calculix-ccx-doc: Three-Dimensional Structural Finite Element Program (documentation files)
Calculix-ccx-test: Three-Dimensional Structural Finite Element Program (documentation files)
Calculix-cgx-examples: Example files for Calculix GraphiX
Logcentral: Logging service for distributed applications
Logcentral-tools: Logging service for distributed applications
R-cran-spc: GNU R Statistical Process Control

Debian packages in contrib or non-free

Metis-edf: Family of Multilevel Partitioning Algorithms

Packaging has started and developers might try the packaging code in VCS

Brlcad: powerful combinatorial Constructive Solid Geometry (CSG)
Diet-agent: DIET grid middleware - agent
Openmeca: Multibody mechanical simulator
Salome-gui: Numerical simulation pre- and post-processor
Salome-jobmanager: job manager for the Salomé platform
Salome-kernel: Numerical simulation pre- and post-processor
Salome-med: Numerical simulation pre- and post-processor
Salome-paravis: paraview-based visualization module for Salome
Salome-smesh: Numerical simulation pre- and post-processor - smesh module
Salome-yacs: Numerical simulation pre- and post-processor - yacs module

Unofficial packages built by somebody else

Tochnog: A free implicit/explicit finite element analysis program
Varkon: A CAD-system with parametric modelling

No known packages available but some record of interest (WNPP bug)

Avl: Analyser for the aerodynamic and flight-dynamic of rigid aircraft.

No known packages available

Pycgns: Package is a Python binding to the CGNS library

Engineering-dev - Debian Science Engineering-dev packages

This metapackage will install Debian Science packages which might be helpful for development of applications for Engineering.

You might also be interested in the science-engineering metapackage.

Official Debian packages with high relevance

Code-saturne-bin: General purpose Computational Fluid Dynamics (CFD) software - binaries
Code-saturne-include: General purpose Computational Fluid Dynamics (CFD) software - includes
Libadios-dev: ADIOS Adaptable IO system for simulations
Libalberta-dev: adaptive finite element library (development files)
Libann-dev: Approximate Nearest Neighbor Searching library (development files)
Libbasix-dev: Finite Element Basis Function Definition Runtime Library (development headers)
Libbox-dev: ??? missing short description for package libbox-dev :-(
Libceres-dev: nonlinear least squares minimizer (development files)
Libcgns-dev: CFD General Notation System library (dev files)
Libcoin-dev: high-level 3D graphics devkit with Open Inventor and VRML97 support
Libdeal.ii-dev: Differential Equations Analysis Library - development files
Libdime-dev: DXF Import, Manipulation, and Export library - devel
Libdolfinx-dev: Shared links and header files for DOLFIN
Libdxflib-dev: Development files for the dxflib library
Libfeel++-dev: ??? missing short description for package libfeel++-dev :-(
Libflann-dev: Fast Library for Approximate Nearest Neighbors - development
Libgetfem++-dev: transitional package
Libhdf5-serial-dev: ??? missing short description for package libhdf5-serial-dev :-(
Libitpp-dev: C++ library of signal processing and communication routines: Headers
Libjhdf4-java: ??? missing short description for package libjhdf4-java :-(
Libjhdf5-java: ??? missing short description for package libjhdf5-java :-(
Liblxi-dev: LAN eXtensions for Instrumentation (LXI) software interface
Libmadlib-dev: mesh adaptation library
Libmed-dev: Development files for libmed
Libmedc-dev: Development files for libmedc
Libmedimport-dev: Development files for libmedimport0
Libnetcdf-dev: creation, access, and sharing of scientific data
Libnfft3-dev: development files for the NFFT library
Libnlopt-dev: nonlinear optimization library -- development package
Liboce-ocaf-dev: ??? missing short description for package liboce-ocaf-dev :-(
Liboce-visualization-dev: ??? missing short description for package liboce-visualization-dev :-(
Libopenturns-dev: headers and development libraries for OpenTURNS
Libp4est-dev: Algorithms for Parallel Adaptive Mesh Refinement - development files
Libplb-dev: CFD solver based on the lattice Boltzmann method. Development files
Libsilo-dev: Development files for SILO Scientific I/O library from LLNL
Libsis-jhdf5-java: ??? missing short description for package libsis-jhdf5-java :-(
Libslepc3.4.2-dev: ??? missing short description for package libslepc3.4.2-dev :-(
Libslicot-dev: numerical algorithms from systems and control theory (static library)
Libtet1.5-dev: Quality Tetrahedral Mesh Generator
Libug-dev: ??? missing short description for package libug-dev :-(
Libxdmf-dev: eXtensible Data Model and Format development tools
Python3-basix: Finite Element Basis Function Definition Runtime Library (Python 3)
Python3-collada: Python 3 module for creating, editing and loading COLLADA
Python3-dolfinx: Python interface for DOLFIN (Python 3)
Python3-ffcx: next-gen compiler for finite element variational forms (Python 3)
Python3-fluids: Python 3 fluid dynamics and engineering design library
Python3-netcdf4: Python 3 interface to the netCDF4 (network Common Data Form) library
Python3-pygalmesh: Python 3 frontend to CGAL's 3D mesh generators
Python3-pynfft: Python bindings for the NFFT3 library - Python 3
Python3-pyode: Python bindings for The Open Dynamics Engine
R-cran-rnetcdf: GNU R package that provides an R interface to NetCDF datasets
Trilinos-all-dev: object-oriented framework for large-scale problems - development files (ALL)

Official Debian packages with lower relevance

Ceres-solver-doc: documentation for ceres-solver
Libgtkdatabox-dev: Gtk+ library to display large amounts of numerical data (development)
Libgtkdataboxmm-dev: ??? missing short description for package libgtkdataboxmm-dev :-(
Libqwt-dev: Qt widgets library for technical applications (development, qt4)
Libqwt5-qt4-dev: Qt4 widgets library for technical applications (development)
Openturns-examples: ??? missing short description for package openturns-examples :-(

Debian packages in contrib or non-free

Libmetis-edf-dev: Family of Multilevel Partitioning Algorithms

Packaging has started and developers might try the packaging code in VCS

Libdiet-admin2.8-dev: DIET grid middleware - admin development files
Libdiet-client2.8-dev: DIET grid middleware - client development files
Libdiet-dagda2.8-dev: DIET grid middleware - dagda development files
Libdiet-sed2.8-dev: DIET grid middleware - sed development files
Libelmer-dev: finite element multiphysics suite - development files
Libgismo-dev: Geometry plus simulatiom modules development files
Libluminate-dev: Illuminator Distributed Visualization Library: development files
Salome-kernel-dev: Numerical simulation pre- and post-processor development files

No known packages available

Pycgns: Package is a Python binding to the CGNS library

Financial engineering - Debian Science financial engineering and computational finance

This metapackage will install Debian Science packages for financial engineering and computational finance.

Official Debian packages with high relevance

Libstopt-dev: library for stochastic optimization problems (development package)
Python3-stopt: library for stochastic optimization problems (Python 3 bindings)
R-cran-fasianoptions: GNU R package for financial engineering -- fAsianOptions
R-cran-fassets: GNU R package for financial engineering -- fAssets
R-cran-fbasics: GNU R package for financial engineering -- fBasics
R-cran-fbonds: GNU R package for financial engineering -- fBonds
R-cran-fcopulae: GNU R package for financial engineering -- fCopulae
R-cran-fexoticoptions: GNU R package for financial engineering -- fExoticOptions
R-cran-fextremes: GNU R package for financial engineering -- fExtremes
R-cran-fgarch: GNU R package for financial engineering -- fGarch
R-cran-fimport: GNU R package for financial engineering -- fImport
R-cran-fmultivar: GNU R package for financial engineering -- fMultivar
R-cran-fnonlinear: GNU R package for financial engineering -- fNonlinear
R-cran-foptions: GNU R package for financial engineering -- fOptions
R-cran-fportfolio: GNU R package for financial engineering -- fPortfolio
R-cran-fregression: GNU R package for financial engineering -- fRegression
R-cran-ftrading: GNU R package for financial engineering -- fTrading
R-cran-funitroots: GNU R package for financial engineering -- fUnitRoots
R-cran-timedate: GNU R package for financial engineering -- timeDate
R-cran-timeseries: GNU R package for financial engineering -- timeSeries

Geography - Debian Science Geography packages

This metapackage will install Debian Science packages related to Geography. You might also be interested in the field::geography debtag and, depending on your focus, in the education-geography metapackage.

Official Debian packages with high relevance

Avce00: Conversion of ESRI Arcinfo Vector Coverage in E00 format
E00compr: Program to read/write Arcinfo compressed E00 files
Gdal-bin: Geospatial Data Abstraction Library - Utility programs
Geoip-bin: IP lookup command line tools that use the GeoIP library
Gis-workstation: Geographic Information Systems (GIS) workstation
Gmt: Generic Mapping Tools
Gosmore: ??? missing short description for package gosmore :-(
Gpsbabel: GPS file conversion plus transfer to/from GPS units
Gpsd: Global Positioning System - daemon
Gpsd-clients: Global Positioning System - clients
Gpsman: GPS data graphical manager
Gpsmanshp: Tcl interface to shapelib
Gpstrans: communicate via serial port with a Garmin GPS receiver
Gpx2shp: convert GPS or GPX file to ESRI Shape file
Grace: XY graphing and plotting tool
Grass: Geographic Resources Analysis Support System (GRASS GIS)
Grass-doc: GRASS GIS user documentation
Hyantesite: ??? missing short description for package hyantesite :-(
Hydroffice.bag-tools: command-line tools for hydroffice.bag
Josm: Editor for OpenStreetMap
Mapnik-utils: C++ toolkit for developing GIS applications (utilities)
Mapserver-bin: MapServer utilities
Ogdi-bin: Open Geographic Datastore Interface Library -- utilities
Openscenegraph: 3D scene graph, utilities and examples (binaries)
Osm2pgsql: OpenStreetMap data to PostgreSQL converter
Osmpbf-bin: OpenStreetMap PBF file format library - tools
Pgadmin3: graphical administration tool for PostgreSQL
Phppgadmin: web-based administration tool for PostgreSQL
Postgis: Geographic objects support for PostgreSQL
Proj-bin: Cartographic projection library (tools)
Python3-cartopy: Cartographic library for Python 3
Python3-mapnik: Python 3 interface to the mapnik library
Python3-mapscript: Python library for MapServer
Python3-spaghetti: Analysis of Network-constrained Spatial Data
Qgis: Geographic Information System (GIS)
Qgis-plugin-grass: GRASS plugin for QGIS
R-cran-fields: GNU R tools for spatial data
R-cran-mapdata: GNU R support for producing geographic maps (supplemental data)
R-cran-mapproj: GNU R support for cartographic projections of map data
R-cran-maps: GNU R support for producing geographic maps
R-cran-raster: GNU R geographic data analysis and modeling
R-cran-sp: GNU R classes and methods for spatial data
Sac2mseed: Convert SAC waveform data to MiniSEED
Viking: GPS data editor, analyzer and viewer

Official Debian packages with lower relevance

Libmseed-dev: seed data records manipulation library (development files)
Python3-pyepsg: easy access to the EPSG database (Python 3)
Sumo: Simulation of Urban MObility (SUMO)

Debian packages in contrib or non-free

Googleearth-package: ??? missing short description for package googleearth-package :-(

Packaging has started and developers might try the packaging code in VCS

Earth3d: Map client displaying a 3D model of the world

Geometry - Debian Science geometry packages

This metapackage will install Debian Science packages related to geometry. You might also be interested in the field::mathematics debtag and, depending on your focus, in the education-mathematics metapackage.

Official Debian packages with high relevance

Carmetal: dynamic geometry software with highly ergonomic UI
Geogebra-kde: ??? missing short description for package geogebra-kde :-(
Python3-gengeo: ??? missing short description for package python3-gengeo :-(

Official Debian packages with lower relevance

Libcgal-dev: ??? missing short description for package libcgal-dev :-(
Libgeometry-primitive-perl: module to represent geometric entities
Libmath-geometry-voronoi-perl: Perl module to compute Voronoi diagrams from sets of points
Libopengv-dev: Computer vision methods for solving geometric vision problems.
Octave-geometry: extension of MatGeom functionality in Octave
Python3-opengv: Computer vision methods for solving geometric vision problems.
Rubiks: Small collection of Rubik's cube solvers

Packaging has started and developers might try the packaging code in VCS

Libgismo-dev: Geometry plus simulatiom modules development files
Salome-geom: Numerical simulation pre- and post-processor - geometry module

High energy physics - Debian Science High Energy Physics packages

This metapackage will install Debian Science packages related to High Energy Physics, which is a branch of physics that studies the elementary subatomic constituents of matter and radiation, and their interactions. The field is also called Particle Physics.

You might also be interested in the debtag field::physics and, depending on your focus, in the physics and education-physics metapackages.

Official Debian packages with high relevance

Cernlib: CERNLIB data analysis suite - general use metapackage
Cernlib-base: CERNLIB data analysis suite - common files
Cernlib-core: CERNLIB data analysis suite - main libraries and programs
Cernlib-extras: CERNLIB data analysis suite - extra programs
Cernlib-montecarlo: CERNLIB Monte Carlo libraries
Dials: Diffraction Integration for Advanced Light Sources
Dzedit: CERNLIB data analysis suite - ZEBRA documentation editor
Feynmf: set of LaTeX macros for creating Feynman diagrams
Geant321: [Physics] Particle detector description and simulation tool
Herwig++: ??? missing short description for package herwig++ :-(
Kuipc: CERNLIB data analysis suite - KUIP compiler
Kxterm: CERNLIB data analysis suite - KUIP terminal emulator
Libroot-bindings-python5.34: ??? missing short description for package libroot-bindings-python5.34 :-(
Libroot-bindings-ruby5.34: ??? missing short description for package libroot-bindings-ruby5.34 :-(
Libroot-core5.34: ??? missing short description for package libroot-core5.34 :-(
Libroot-geom5.34: ??? missing short description for package libroot-geom5.34 :-(
Libroot-graf2d-gpad5.34: ??? missing short description for package libroot-graf2d-gpad5.34 :-(
Libroot-graf2d-graf5.34: ??? missing short description for package libroot-graf2d-graf5.34 :-(
Libroot-graf2d-postscript5.34: ??? missing short description for package libroot-graf2d-postscript5.34 :-(
Libroot-graf3d-eve5.34: ??? missing short description for package libroot-graf3d-eve5.34 :-(
Libroot-graf3d-g3d5.34: ??? missing short description for package libroot-graf3d-g3d5.34 :-(
Libroot-graf3d-gl5.34: ??? missing short description for package libroot-graf3d-gl5.34 :-(
Libroot-gui-ged5.34: ??? missing short description for package libroot-gui-ged5.34 :-(
Libroot-gui5.34: ??? missing short description for package libroot-gui5.34 :-(
Libroot-hist-spectrum5.34: ??? missing short description for package libroot-hist-spectrum5.34 :-(
Libroot-hist5.34: ??? missing short description for package libroot-hist5.34 :-(
Libroot-html5.34: ??? missing short description for package libroot-html5.34 :-(
Libroot-io-xmlparser5.34: ??? missing short description for package libroot-io-xmlparser5.34 :-(
Libroot-io5.34: ??? missing short description for package libroot-io5.34 :-(
Libroot-math-foam5.34: ??? missing short description for package libroot-math-foam5.34 :-(
Libroot-math-genvector5.34: ??? missing short description for package libroot-math-genvector5.34 :-(
Libroot-math-mathcore5.34: ??? missing short description for package libroot-math-mathcore5.34 :-(
Libroot-math-mathmore5.34: ??? missing short description for package libroot-math-mathmore5.34 :-(
Libroot-math-matrix5.34: ??? missing short description for package libroot-math-matrix5.34 :-(
Libroot-math-minuit5.34: ??? missing short description for package libroot-math-minuit5.34 :-(
Libroot-math-mlp5.34: ??? missing short description for package libroot-math-mlp5.34 :-(
Libroot-math-physics5.34: ??? missing short description for package libroot-math-physics5.34 :-(
Libroot-math-quadp5.34: ??? missing short description for package libroot-math-quadp5.34 :-(
Libroot-math-smatrix5.34: ??? missing short description for package libroot-math-smatrix5.34 :-(
Libroot-math-splot5.34: ??? missing short description for package libroot-math-splot5.34 :-(
Libroot-math-unuran5.34: ??? missing short description for package libroot-math-unuran5.34 :-(
Libroot-misc-memstat5.34: ??? missing short description for package libroot-misc-memstat5.34 :-(
Libroot-misc-minicern5.34: ??? missing short description for package libroot-misc-minicern5.34 :-(
Libroot-misc-table5.34: ??? missing short description for package libroot-misc-table5.34 :-(
Libroot-montecarlo-eg5.34: ??? missing short description for package libroot-montecarlo-eg5.34 :-(
Libroot-montecarlo-vmc5.34: ??? missing short description for package libroot-montecarlo-vmc5.34 :-(
Libroot-net-auth5.34: ??? missing short description for package libroot-net-auth5.34 :-(
Libroot-net-bonjour5.34: ??? missing short description for package libroot-net-bonjour5.34 :-(
Libroot-net-ldap5.34: ??? missing short description for package libroot-net-ldap5.34 :-(
Libroot-net5.34: ??? missing short description for package libroot-net5.34 :-(
Libroot-proof-proofplayer5.34: ??? missing short description for package libroot-proof-proofplayer5.34 :-(
Libroot-proof5.34: ??? missing short description for package libroot-proof5.34 :-(
Libroot-roofit5.34: ??? missing short description for package libroot-roofit5.34 :-(
Libroot-tmva5.34: ??? missing short description for package libroot-tmva5.34 :-(
Libroot-tree-treeplayer5.34: ??? missing short description for package libroot-tree-treeplayer5.34 :-(
Libroot-tree5.34: ??? missing short description for package libroot-tree5.34 :-(
Looptools: Integral Evaluator of One-loop Feynman Diagram
Neuron: Simulation environment for computational models of neurons
Nypatchy: CERNLIB data analysis suite - patch pre-processor for source code
Octave-lhapdf: ??? missing short description for package octave-lhapdf :-(
Paw: Physics Analysis Workstation - a graphical analysis program
Paw++: Physics Analysis Workstation (Lesstif-enhanced version)
Pawserv: CERNLIB data analysis suite - distributed PAW and file transfer servers
Pythia8-root-interface: ??? missing short description for package pythia8-root-interface :-(
Rivet: ??? missing short description for package rivet :-(
Rivet-plugins: ??? missing short description for package rivet-plugins :-(
Rivet-root-converter: ??? missing short description for package rivet-root-converter :-(
Root-macro-fastjet: ??? missing short description for package root-macro-fastjet :-(
Root-plugin-geom-gdml: ??? missing short description for package root-plugin-geom-gdml :-(
Root-plugin-geom-geombuilder: ??? missing short description for package root-plugin-geom-geombuilder :-(
Root-plugin-geom-geompainter: ??? missing short description for package root-plugin-geom-geompainter :-(
Root-plugin-graf2d-asimage: ??? missing short description for package root-plugin-graf2d-asimage :-(
Root-plugin-graf2d-qt: ??? missing short description for package root-plugin-graf2d-qt :-(
Root-plugin-graf2d-x11: ??? missing short description for package root-plugin-graf2d-x11 :-(
Root-plugin-graf3d-x3d: ??? missing short description for package root-plugin-graf3d-x3d :-(
Root-plugin-gui-fitpanel: ??? missing short description for package root-plugin-gui-fitpanel :-(
Root-plugin-gui-guibuilder: ??? missing short description for package root-plugin-gui-guibuilder :-(
Root-plugin-gui-qt: ??? missing short description for package root-plugin-gui-qt :-(
Root-plugin-gui-sessionviewer: ??? missing short description for package root-plugin-gui-sessionviewer :-(
Root-plugin-hist-hbook: ??? missing short description for package root-plugin-hist-hbook :-(
Root-plugin-hist-histpainter: ??? missing short description for package root-plugin-hist-histpainter :-(
Root-plugin-hist-spectrumpainter: ??? missing short description for package root-plugin-hist-spectrumpainter :-(
Root-plugin-io-sql: ??? missing short description for package root-plugin-io-sql :-(
Root-plugin-io-xml: ??? missing short description for package root-plugin-io-xml :-(
Root-plugin-math-fftw3: ??? missing short description for package root-plugin-math-fftw3 :-(
Root-plugin-math-fumili: ??? missing short description for package root-plugin-math-fumili :-(
Root-plugin-math-minuit2: ??? missing short description for package root-plugin-math-minuit2 :-(
Root-plugin-montecarlo-pythia8: ??? missing short description for package root-plugin-montecarlo-pythia8 :-(
Root-plugin-net-globus: ??? missing short description for package root-plugin-net-globus :-(
Root-plugin-net-krb5: ??? missing short description for package root-plugin-net-krb5 :-(
Root-plugin-sql-mysql: ??? missing short description for package root-plugin-sql-mysql :-(
Root-plugin-sql-odbc: ??? missing short description for package root-plugin-sql-odbc :-(
Root-plugin-sql-pgsql: ??? missing short description for package root-plugin-sql-pgsql :-(
Root-plugin-tree-treeviewer: ??? missing short description for package root-plugin-tree-treeviewer :-(
Root-system: ??? missing short description for package root-system :-(
Root-system-bin: ??? missing short description for package root-system-bin :-(
Root-system-common: ??? missing short description for package root-system-common :-(
Root-system-proofd: ??? missing short description for package root-system-proofd :-(
Root-system-rootd: ??? missing short description for package root-system-rootd :-(
Sdpb: Semidefinite program solver
Thepeg: ??? missing short description for package thepeg :-(
Thepeg-gui: ??? missing short description for package thepeg-gui :-(
Zftp: CERNLIB data analysis suite - file transfer program

Official Debian packages with lower relevance

Geant321-doc: [Physics] Documentation for GEANT 3.21
Lhapdf-pdfsets-minimal: ??? missing short description for package lhapdf-pdfsets-minimal :-(
Paw-demos: Physics Analysis Workstation examples and tests
Root-system-doc: ??? missing short description for package root-system-doc :-(

Packaging has started and developers might try the packaging code in VCS

Geant4: physics simulation toolkit

High energy physics (devel) - Debian Science High Energy Physics development packages

This metapackage will install Debian Science packages related to development of High Energy Physics applications, which is a branch of physics that studies the elementary subatomic constituents of matter and radiation, and their interactions. The field is also called Particle Physics.

You might also be interested in the debtag field::physics and, depending on your focus, in the physics and education-physics metapackages.

Official Debian packages with high relevance

Cernlib-base-dev: CERNLIB data analysis suite - dependencies checking script
Cernlib-core-dev: CERNLIB data analysis suite - core development files
Fcc: Script to compile C/C++ programs and link to Fortran libraries
Herwig++-dev: ??? missing short description for package herwig++-dev :-(
Libclhep-dev: CLHEP: A Class Library for High Energy Physics - development
Libfastjet-dev: Development files of FastJet
Libfastjet-fortran-dev: Fortran bindings of FastJet - development files
Libfastjetplugins-dev: FastJet plugins - development files
Libfastjettools-dev: Tools for FastJet - development files
Libhepmc-dev: ??? missing short description for package libhepmc-dev :-(
Libhepmc3-dev: Event Record for Monte Carlo Generators - development files
Libhepmcfio-dev: ??? missing short description for package libhepmcfio-dev :-(
Libhepmcinterface8-dev: ??? missing short description for package libhepmcinterface8-dev :-(
Libkim-api-dev: Development files for KIM-API
Liblhapdf-dev: ??? missing short description for package liblhapdf-dev :-(
Libmctc-lib-dev: modular computation tool chain library (development files)
Libmmdb2-dev: macromolecular coordinate library - development files
Libncrystal-dev: Monte Carlo simulations of neutrons in crystals (dev files)
Libooptools-dev: Development files of LoopTools
Libpythia8-dev: ??? missing short description for package libpythia8-dev :-(
Librivet-dev: ??? missing short description for package librivet-dev :-(
Libroot-bindings-python-dev: ??? missing short description for package libroot-bindings-python-dev :-(
Libroot-bindings-ruby-dev: ??? missing short description for package libroot-bindings-ruby-dev :-(
Libroot-core-dev: ??? missing short description for package libroot-core-dev :-(
Libroot-geom-dev: ??? missing short description for package libroot-geom-dev :-(
Libroot-graf2d-gpad-dev: ??? missing short description for package libroot-graf2d-gpad-dev :-(
Libroot-graf2d-graf-dev: ??? missing short description for package libroot-graf2d-graf-dev :-(
Libroot-graf2d-postscript-dev: ??? missing short description for package libroot-graf2d-postscript-dev :-(
Libroot-graf3d-eve-dev: ??? missing short description for package libroot-graf3d-eve-dev :-(
Libroot-graf3d-g3d-dev: ??? missing short description for package libroot-graf3d-g3d-dev :-(
Libroot-graf3d-gl-dev: ??? missing short description for package libroot-graf3d-gl-dev :-(
Libroot-gui-dev: ??? missing short description for package libroot-gui-dev :-(
Libroot-gui-ged-dev: ??? missing short description for package libroot-gui-ged-dev :-(
Libroot-hist-dev: ??? missing short description for package libroot-hist-dev :-(
Libroot-hist-spectrum-dev: ??? missing short description for package libroot-hist-spectrum-dev :-(
Libroot-html-dev: ??? missing short description for package libroot-html-dev :-(
Libroot-io-dev: ??? missing short description for package libroot-io-dev :-(
Libroot-io-xmlparser-dev: ??? missing short description for package libroot-io-xmlparser-dev :-(
Libroot-math-foam-dev: ??? missing short description for package libroot-math-foam-dev :-(
Libroot-math-genvector-dev: ??? missing short description for package libroot-math-genvector-dev :-(
Libroot-math-mathcore-dev: ??? missing short description for package libroot-math-mathcore-dev :-(
Libroot-math-mathmore-dev: ??? missing short description for package libroot-math-mathmore-dev :-(
Libroot-math-matrix-dev: ??? missing short description for package libroot-math-matrix-dev :-(
Libroot-math-minuit-dev: ??? missing short description for package libroot-math-minuit-dev :-(
Libroot-math-mlp-dev: ??? missing short description for package libroot-math-mlp-dev :-(
Libroot-math-physics-dev: ??? missing short description for package libroot-math-physics-dev :-(
Libroot-math-quadp-dev: ??? missing short description for package libroot-math-quadp-dev :-(
Libroot-math-smatrix-dev: ??? missing short description for package libroot-math-smatrix-dev :-(
Libroot-math-splot-dev: ??? missing short description for package libroot-math-splot-dev :-(
Libroot-math-unuran-dev: ??? missing short description for package libroot-math-unuran-dev :-(
Libroot-misc-memstat-dev: ??? missing short description for package libroot-misc-memstat-dev :-(
Libroot-misc-minicern-dev: ??? missing short description for package libroot-misc-minicern-dev :-(
Libroot-misc-table-dev: ??? missing short description for package libroot-misc-table-dev :-(
Libroot-montecarlo-eg-dev: ??? missing short description for package libroot-montecarlo-eg-dev :-(
Libroot-montecarlo-vmc-dev: ??? missing short description for package libroot-montecarlo-vmc-dev :-(
Libroot-net-auth-dev: ??? missing short description for package libroot-net-auth-dev :-(
Libroot-net-bonjour-dev: ??? missing short description for package libroot-net-bonjour-dev :-(
Libroot-net-dev: ??? missing short description for package libroot-net-dev :-(
Libroot-net-ldap-dev: ??? missing short description for package libroot-net-ldap-dev :-(
Libroot-proof-dev: ??? missing short description for package libroot-proof-dev :-(
Libroot-proof-proofplayer-dev: ??? missing short description for package libroot-proof-proofplayer-dev :-(
Libroot-roofit-dev: ??? missing short description for package libroot-roofit-dev :-(
Libroot-static: ??? missing short description for package libroot-static :-(
Libroot-tmva-dev: ??? missing short description for package libroot-tmva-dev :-(
Libroot-tree-dev: ??? missing short description for package libroot-tree-dev :-(
Libroot-tree-treeplayer-dev: ??? missing short description for package libroot-tree-treeplayer-dev :-(
Libsiscone-dev: Seedless Infrared Safe Cone jet finder - development files
Libsiscone-spherical-dev: Spherical version of SISCone - development files
Libthepeg-dev: ??? missing short description for package libthepeg-dev :-(
Neuron-dev: Neuron simulation environment - Development files
Python3-dials: Diffraction Integration for Advanced Light Sources - Python3
Python3-mpiplus: Python GPU framework for alchemical free energy calculations (Python 3)
Python3-neuron: Neuron simulation environment - Python bindings
Python3-pymbar: Python implementation of the multistate Bennett acceptance ratio (MBAR)
Rivet-plugins-dev: ??? missing short description for package rivet-plugins-dev :-(

Official Debian packages with lower relevance

Ckon: automatic build tool for ROOT data analysis software
Clhep-doc: Documentation of CLHEP
Fastjet-doc: Documentation of FastJet
Fastjet-examples: Example source files of FastJet
Hepmc-examples: ??? missing short description for package hepmc-examples :-(
Hepmc-reference-manual: ??? missing short description for package hepmc-reference-manual :-(
Hepmc-user-manual: ??? missing short description for package hepmc-user-manual :-(
Lhapdf-ccwrap-doc: ??? missing short description for package lhapdf-ccwrap-doc :-(
Pythia8-doc-html: ??? missing short description for package pythia8-doc-html :-(
Pythia8-doc-worksheet: ??? missing short description for package pythia8-doc-worksheet :-(
Pythia8-examples: ??? missing short description for package pythia8-examples :-(
Refmac-dictionary: dictionary for macromolecular refinement and model building
Rivet-plugins-doc: ??? missing short description for package rivet-plugins-doc :-(
Rivet-reference: ??? missing short description for package rivet-reference :-(
Rivet-user-manual: ??? missing short description for package rivet-user-manual :-(
Siscone-doc-html: Developer's reference manual of SISCone (HTML)
Siscone-doc-pdf: Developer's reference manual of SISCone (PDF)
Siscone-examples: Seedless Infrared Safe Cone jet finder - example files
Thepeg-reference: ??? missing short description for package thepeg-reference :-(

Image analysis - Debian Science image analysis packages

This metapackage will install Debian Science packages related to scientific image acquisition. This might be used in several sciences (as for instance science-dataacquisition, science-viewing and science-typesetting).

Official Debian packages with high relevance

Gpiv: ??? missing short description for package gpiv :-(
Gpivtools: ??? missing short description for package gpivtools :-(
Gwyddion: Scanning Probe Microscopy visualization and analysis tool
Libcvd-tools: C++ library for computer vision, image, and video processing - tools
Limereg: Lightweight Image Registration
Teem-apps: Tools to process and visualize scientific data and images - command line tools

Image analysis development - Debian Science development of image analysis applications

This metapackage will install Debian Science development libraries to develop scientific image analysis applications acquisitions.

Official Debian packages with high relevance

Cimg-dev: powerful image processing library
Libcv-dev: ??? missing short description for package libcv-dev :-(
Libcvd-dev: C++ library for computer vision, image, and video processing - devel files
Libimglib2-java: multidimensional image processing library in Java
Liblimereg-dev: Library for lightweight image registration [development files]
Libsimage-dev: generic interface to various image file format libraries. Development files.
Libvigraimpex-dev: development files for the C++ computer vision library
Libvlfeat-dev: Computer vision library focussing on visual features and clustering
Python3-imageio: library for reading and writing image data (Python 3)
Python3-meshio: library for reading and writing mesh data (Python 3)
Python3-vigra: Python3 bindings for the C++ computer vision library

Official Debian packages with lower relevance

Lib3ds-dev: Autodesk 3D Studio file reader development files
Libfreeimage-dev: Support library for graphics image formats (development files)

Packaging has started and developers might try the packaging code in VCS

Libvisad-java: Visualization for Algorithm Development

Linguistics - Debian Science Linguistics packages

This metapackage is part of the Debian Pure Blend "Debian Science" and installs packages related to Linguistics.

Official Debian packages with high relevance

Apertium: Shallow-transfer machine translation engine
Apertium-eval-translator: Evaluate machine translation output against reference
Apertium-lex-tools: Constraint-based lexical selection module
Artha: Handy off-line thesaurus based on WordNet
Cg3: Tools for using the 3rd edition of Constraint Grammar (CG-3)
Collatinus: lemmatisation of latin text
Dimbl: Distributed Memory Based Learner
Fasttext: Efficient learning of word representations and sentence classification library
Frog: tagger and parser for natural languages (runtime)
Giella-sme: Giellatekno single language data for North Saami
Hfst: Helsinki Finite-State Transducer Technology
Hfst-ospell: Spell checker library and tool based on HFST
Irstlm: IRST Language Modeling Toolkit
Libcld2-dev: Compact Language Detector 2, development package
Link-grammar: Carnegie Mellon University's link grammar parser
Lttoolbox: Apertium lexical processing modules and tools
Mbt: memory-based tagger-generator and tagger
Mbtserver: Server extensions for the MBT tagger
Opennlp: wrapper for Apache OpenNLP natural language text processing toolkit
Python3-pynlpl: PyNLPl is a library for Natural Language Processing (Python 3 version)
Python3-thinc: Practical Machine Learning for NLP in Python
R-cran-lexrankr: extractive summarization of text with the LexRank algorithm
R-cran-snowballc: Snowball stemmers based on the C libstemmer UTF-8 library
Sentencepiece: Unsupervised text tokenizer and detokenizer
Timbl: Tilburg Memory Based Learner
Timblserver: Server extensions for Timbl
Ucto: Unicode Tokenizer
Uctodata: Data files for Ucto
Wordnet: electronic lexical database of English language

Official Debian packages with lower relevance

Apertium-af-nl: Transitional dummy package for apertium-afr-nld
Apertium-apy: Apertium APY service
Apertium-arg: Apertium single language data for Aragonese
Apertium-arg-cat: Apertium translation data for the Aragonese-Catalan pair
Apertium-bel: Apertium single language data for Belarusian
Apertium-bel-rus: Apertium translation data for the Belarusian-Russian pair
Apertium-br-fr: Apertium linguistic data to translate between Breton and French
Apertium-ca-it: Transitional dummy package for apertium-cat-ita
Apertium-cat: Apertium single language data for Catalan
Apertium-cat-srd: Apertium translation data for the Catalan-Sardinian pair
Apertium-crh: Apertium single language data for Crimean Tatar
Apertium-crh-tur: Apertium translation data for the Crimean Tatar-Turkish pair
Apertium-cy-en: Apertium translation data for the Welsh-English pair
Apertium-dan: Apertium single language data for Danish
Apertium-dan-nor: Apertium translation data for the Danish-Norwegian pair
Apertium-en-ca: Transitional dummy package for apertium-eng-cat
Apertium-en-es: Transitional dummy package for apertium-eng-spa
Apertium-en-gl: Apertium translation data for the English-Galician pair
Apertium-eo-ca: Apertium translation data for the Esperanto-Catalan pair
Apertium-eo-en: Apertium linguistic data to translate between Esperanto and English
Apertium-eo-es: Apertium translation data for the Esperanto-Spanish pair
Apertium-eo-fr: Apertium translation data for the Esperanto-French pair
Apertium-es-ast: Transitional dummy package for apertium-spa-ast
Apertium-es-ca: Transitional dummy package for apertium-spa-cat
Apertium-es-gl: Apertium translation data for the Spanish-Galician pair
Apertium-es-it: Transitional dummy package for apertium-spa-ita
Apertium-es-pt: Apertium translation data for the Spanish-Portuguese pair
Apertium-es-ro: Apertium translation data for the Spanish-Romanian pair
Apertium-eu-en: Apertium translation data for the Basque-English pair
Apertium-eu-es: Apertium translation data for the Basque-Spanish pair
Apertium-fr-ca: ??? missing short description for package apertium-fr-ca :-(
Apertium-fr-es: Apertium translation data for the French-Spanish pair
Apertium-fra: Apertium single language data for French
Apertium-fra-cat: Apertium translation data for the French-Catalan pair
Apertium-hbs: Apertium single language data for Serbo-Croatian
Apertium-hbs-eng: Apertium translation data for the Serbo-Croatian - English pair
Apertium-hbs-mkd: Apertium translation data for the Serbo-Croatian-Macedonian pair
Apertium-hbs-slv: Apertium translation data for the Serbo-Croatian-Slovenian pair
Apertium-hin: Apertium single language data for Hindi
Apertium-id-ms: Transitional dummy package for apertium-ind-zlm
Apertium-is-sv: Transitional dummy package for apertium-isl-swe
Apertium-isl: Apertium single language data for Icelandic
Apertium-isl-eng: Apertium translation data for the Icelandic-English pair
Apertium-ita: Apertium single language data for Italian
Apertium-kaz: Apertium single language data for Kazakh
Apertium-kaz-tat: Apertium translation data for the Kazakh-Tatar pair
Apertium-mk-bg: Transitional dummy package for apertium-mkd-bul
Apertium-mk-en: Transitional dummy package for apertium-mkd-eng
Apertium-mlt-ara: Apertium translation data for the Maltese-Arabic pair
Apertium-nno: Apertium single language data for Norwegian Nynorsk
Apertium-nno-nob: Apertium translation data for the Norwegian Nynorsk-Norwegian Bokmål pair
Apertium-nob: Apertium single language data for Norwegian Bokmål
Apertium-oc-ca: Apertium translation data for the Occitan-Catalan pair
Apertium-oc-es: Apertium translation data for the Occitan-Spanish pair
Apertium-oci: Apertium single language data for Occitan
Apertium-pol: Apertium single language data for Polish
Apertium-pol-szl: Apertium translation data for the Polish-Silesian pair
Apertium-pt-ca: Transitional dummy package for apertium-por-cat
Apertium-pt-gl: Apertium translation data for the Portuguese-Galician pair
Apertium-rus: Apertium single language data for Russian
Apertium-separable: Reordering separable/discontiguous multiwords
Apertium-sme-nob: Apertium translation data for the Northern Sami-Norwegian Bokmål pair
Apertium-spa: Apertium single language data for Spanish
Apertium-spa-arg: Apertium translation data for the Spanish-Aragonese pair
Apertium-srd: Apertium single language data for Sardinian
Apertium-srd-ita: Apertium translation data for the Sardinian-Italian pair
Apertium-swe: Apertium single language data for Swedish
Apertium-swe-dan: Apertium translation data for the Swedish-Danish pair
Apertium-swe-nor: Apertium translation data for the Swedish-Norwegian pair
Apertium-szl: Apertium single language data for Silesian
Apertium-tat: Apertium single language data for Tatar
Apertium-tur: Apertium single language data for Turkish
Apertium-ukr: Apertium single language data for Ukrainian
Apertium-urd: Apertium single language data for Urdu
Apertium-urd-hin: Apertium translation data for the Urdu-Hindi pair
Frogdata: Data files for Frog
Libapache-opennlp-java: machine learning based toolkit for the processing of natural language text
Libcg3-dev: Headers and shared files to develop using the CG-3 library
Libfasttext-dev: Header files of fastText
Libfolia-dev: Implementation of the FoLiA document format (C++ headers)
Libmbt-dev: memory-based tagger-generator and tagger - development
Libopennlp-maxent-java: OpenNLP Maximum Entropy Package
Libsentencepiece-dev: Header files of SentencePiece
Libticcutils-dev: utility functions used in the context of Natural Language Processing (headers)
Libticcutils2-dev: ??? missing short description for package libticcutils2-dev :-(
Libtimbl-dev: Tilburg Memory Based Learner - development
Libtimblserver-dev: Server extensions for Timbl - development
Libucto-dev: Unicode Tokenizer - development
Python3-fasttext: fastText binding for Python3
Python3-gensim: Python framework for fast Vector Space Modelling
Python3-nltk: Python3 libraries for natural language processing
Python3-sentencepiece: SentencePiece binding for Python3
Python3-snowballstemmer: Pure Python Snowball stemming library
Python3-streamparser: Python library to parse Apertium stream format
R-cran-nlp: Natural Language Processing Infrastructure for R
R-cran-tm: Text Mining functionality for R
Tfdocgen: TiLP framework documentation generator

Debian packages in experimental

Sequitur-g2p: Grapheme to Phoneme conversion tool

Packaging has started and developers might try the packaging code in VCS

Spacy: Industrial-strength Natural Language Processing (NLP)
Travatar: tree based machine translation toolkit

No known packages available but some record of interest (WNPP bug)

Python3-timbl: Python bindings for the Tilburg Memory Based Learner (Timbl)

No known packages available

Wnsqlbuilder: SQL version of WordNet 3.0

Logic - Debian Science Logic packages

This metapackage is part of the Debian Pure Blend "Debian Science" and installs packages related to Computational Logic. It contains formula transformation tools, solvers for formulas specified in various logics, interactive proof systems, etc.

Official Debian packages with high relevance

Agda: dependently typed functional programming language
Alt-ergo: Automatic theorem prover dedicated to program verification
Boolector: SMT solver for bit-vectors and arrays
Clasp: conflict-driven nogood learning answer set solver
Coinor-cbc: Coin-or branch-and-cut mixed integer programming solver
Coinor-symphony: COIN-OR solver for mixed-integer linear programs
Coq: proof assistant for higher-order logic (toplevel and compiler)
Cvc4: automated theorem prover for SMT problems
Depqbf: solver for quantified boolean formulae
Drat-trim: ??? missing short description for package drat-trim :-(
Gringo: grounding tools for (disjunctive) logic programs
Hol-light: HOL Light theorem prover
Hol88: Higher Order Logic, system image
Kissat: ??? missing short description for package kissat :-(
Lbt: converts from LTL formulas to Büchi automata
Maria: reachability analyzer for Algebraic System Nets
Maude: high-performance logical framework
Minisat+: solver for pseudo-Boolean constraints
Mona: theorem prover based on automata
Picosat: SAT solver with proof and core support
Proofgeneral: generic frontend for proof assistants
Prover9: theorem prover and countermodel generator
Sat4j: Efficient library of SAT solvers in Java
Spass: automated theorem prover for first-order logic with equality
Toulbar2: Exact combinatorial optimization for Graphical Models
Why3: Software verification platform
Z3: theorem prover from Microsoft Research

Official Debian packages with lower relevance

Coinor-libcoinmp-dev: Simple C API for COIN-OR Solvers Clp and Cbc -- development

Machine learning - Debian Science Machine Learning packages

This metapackage will install packages useful for machine learning. Included packages range from knowledge-based (expert) inference systems to software implementing the advanced statistical methods that currently dominate the field.

Official Debian packages with high relevance

Autoclass: automatic classification or clustering
Caffe-cpu: Fast, open framework for Deep Learning (Meta)
Gprolog: GNU Prolog compiler
Libcv-dev: ??? missing short description for package libcv-dev :-(
Libevocosm-dev: ??? missing short description for package libevocosm-dev :-(
Libfann-dev: Development libraries and header files for FANN
Libga-dev: C++ Library of Genetic Algorithm Components
Liblinear-dev: Development libraries and header files for LIBLINEAR
Libmlpack-dev: intuitive, fast, scalable C++ machine learning library (development libs)
Libocas-dev: Development libraries and header files for LIBOCAS
Libroot-math-mlp-dev: ??? missing short description for package libroot-math-mlp-dev :-(
Libroot-montecarlo-vmc-dev: ??? missing short description for package libroot-montecarlo-vmc-dev :-(
Libroot-tmva-dev: ??? missing short description for package libroot-tmva-dev :-(
Libshark-dev: ??? missing short description for package libshark-dev :-(
Libshogun-dev: Large Scale Machine Learning Toolbox
Libsvm-dev: LIBSVM header files
Libtorch3-dev: State of the art machine learning library - development files
Libvigraimpex-dev: development files for the C++ computer vision library
Lua-torch-graph: Graph Computation Package for Torch Framework
Lua-torch-image: Image Load/Save Library for Torch Framework
Lua-torch-nn: Neural Network Package for Torch Framework
Lua-torch-nngraph: Neural Network Graph Package for Torch Framework
Lua-torch-optim: Numeric Optimization Package for Torch Framework
Lua-torch-trepl: REPL Package for Torch Framework
Lua-torch-xlua: Lua Extension Package for Torch Framework
Mcl: Markov Cluster algorithm
Mrgingham: Chessboard finder for visual calibration routines
Octave-ga: genetic optimization code for Octave
Pgapack: ??? missing short description for package pgapack :-(
Python3-amp: Atomistic Machine-learning Package (python 3)
Python3-fann2: Python 3 bindings for FANN
Python3-genetic: genetic algorithms in Python
Python3-keras: deep learning framework running on Theano or TensorFlow
Python3-lasagne: deep learning library build on the top of Theano (Python3 modules)
Python3-mdp: Modular toolkit for Data Processing
Python3-mlpy: high-performance Python package for predictive modeling
Python3-opencv: Python 3 bindings for the computer vision library
Python3-sklearn: Python modules for machine learning and data mining - Python 3
Python3-statsmodels: Python3 module for the estimation of statistical models
Python3-thinc: Practical Machine Learning for NLP in Python
Python3-torch: Tensors and Dynamic neural networks in Python (Python Interface)
Python3-torch-sparse: PyTorch Extension Library of Optimized Autograd Sparse Matrix Operations
Python3-vigra: Python3 bindings for the C++ computer vision library
R-cran-amore: GNU R: A MORE flexible neural network package
R-cran-bayesm: GNU R package for Bayesian inference
R-cran-class: GNU R package for classification
R-cran-cluster: GNU R package for cluster analysis by Rousseeuw et al
R-cran-gbm: GNU R package providing Generalized Boosted Regression Models
R-cran-mass: GNU R package of Venables and Ripley's MASS
R-cran-mcmcpack: R routines for Markov chain Monte Carlo model estimation
R-cran-metrics: GNU R evaluation metrics for machine learning
R-cran-mlbench: GNU R Machine Learning Benchmark Problems
R-cran-mlr: Machine learning in GNU R
R-cran-mnp: GNU R package for fitting multinomial probit (MNP) models
R-cran-msm: GNU R Multi-state Markov and hidden Markov models in continuous time
R-cran-tgp: GNU R Bayesian treed Gaussian process models
Root-system: ??? missing short description for package root-system :-(
Scilab-ann: ??? missing short description for package scilab-ann :-(
Torch-core-free: Scientific Computing Framework For Luajit (Core Components)
Toulbar2: Exact combinatorial optimization for Graphical Models
Vowpal-wabbit: ??? missing short description for package vowpal-wabbit :-(
Weka: Machine learning algorithms for data mining tasks
Yap: ??? missing short description for package yap :-(

Official Debian packages with lower relevance

Ask: Adaptive Sampling Kit for big experimental spaces
Libdlib-dev: C++ toolkit for machine learning and computer vision - development
Libdlpack-dev: Open In Memory Tensor Structure
Libfannj-java: FannJ a Java binding to the Fast Artificial Neural Network (FANN) C library
Libfclib-dev: read and write problems from the Friction Contact Library (headers)
Libmkldnn-dev: Intel Math Kernel Library for Deep Neural Networks (dev)
Libmrgingham-dev: Chessboard finder for visual calibration routines
Libxgboost-predictor-java: Java implementation of XGBoost predictor for online prediction tasks
Libxsmm-dev: Library for matrix operations and deep learning primitives
Python3-hdmedians: high-dimensional medians in Python3
Python3-imblearn: library providing resampling techniques
Python3-liac-arff: library for reading and writing ARFF files in Python
Python3-mrgingham: Chessboard finder for visual calibration routines
Science-numericalcomputation: Debian Science Numerical Computation packages
Science-statistics: Debian Science Statistics packages
Science-typesetting: Debian Science typesetting packages

Debian packages in contrib or non-free

Caffe-cuda: Fast, open framework for Deep Learning (Meta)

Packaging has started and developers might try the packaging code in VCS

Spacy: Industrial-strength Natural Language Processing (NLP)
Streamlit: fast way to build custom ML tools

Unofficial packages built by somebody else

Python3-orange: Data mining framework

No known packages available but some record of interest (WNPP bug)

Flann: Fast Library for Approximate Nearest Neighbors
Pybrain: Modular Machine Learning Library

Mathematics - Debian Science Mathematics packages

This metapackage will install Debian Science packages related to Mathematics. You might also be interested in the field::mathematics debtag and, depending on your focus, in the education-mathematics metapackage.

Official Debian packages with high relevance

4ti2: mathematical tool suite for problems on linear spaces -- tools
Agda: dependently typed functional programming language
Auto-07p: software for continuation and bifurcation problems in ODE
Axiom: General purpose computer algebra system: main binary and modules
Bliss: tool to compute graph automorphisms and labelings -- bin
Cohomcalg: sheaf cohomology of line bundles on toric varieties
Coinor-cbc: Coin-or branch-and-cut mixed integer programming solver
Coinor-csdp: Software package for semidefinite programming (binaries)
Coinor-libbonmin-dev: COIN-OR mixed integer programming (developer files)
Coinor-symphony: COIN-OR solver for mixed-integer linear programs
Coq: proof assistant for higher-order logic (toplevel and compiler)
Cryptominisat: SAT solver command line interface
Eclib-tools: Programs for modular symbols and elliptic curves over Q
Eprover: Equational theorem prover
Feel++-apps: ??? missing short description for package feel++-apps :-(
Fenics: Automated Solution of Differential Equations
Flintqs: Program using quadratic sieve to factor integers
Form: Symbolic manipulation system
Fplll-tools: Tools to compute LLL-reduction of Euclidian lattices
Freefem: PDE oriented language using Finite Element Method
Freefem++: Provides the binaries of the FreeFem++ FE suite
Freefem3d: ??? missing short description for package freefem3d :-(
Freemat: mathematics framework (mostly matlab compatible)
Frobby: Computations with monomial ideals
Gap: computer algebra system for Groups, Algorithms and Programming
Gap-character-tables: GAP Library of character tables
Gap-design: block designs for GAP
Gap-factint: advanced methods for factoring integers for GAP
Gap-float: multi-precision floating-point computation for GAP
Gap-grape: GRaph Algorithms using PErmutation groups for GAP
Gap-guava: coding theory library for GAP
Gap-laguna: LAGUNA GAP package
Gap-openmath: OpenMath phrasebook for GAP
Gap-prim-groups: Database of primitive groups for GAP
Gap-small-groups: Database of small groups for GAP
Gap-small-groups-extra: Large database of small groups for GAP
Gap-sonata: Systems Of Nearrings And Their Applications for GAP
Gap-table-of-marks: GAP TomLib - The GAP Library of Tables of Marks
Gap-toric: toric variety for GAP
Gap-trans-groups: Database of transitive groups for GAP
Geneagrapher: Create tree from Mathematics Genealogy Project (executable)
Geogebra: Dynamic mathematics software for education
Geomview: interactive geometry viewing program
Gerris: Fluid Flow Solver
Getdp: general environment for the treatment of discrete problems
Gfan: program for computing with Groebner fans
Ginac-tools: GiNaC symbolic framework support tools
Gmsh: Three-dimensional finite element mesh generator
Graphviz: rich set of graph drawing tools
Hol-light: HOL Light theorem prover
Julia: high-performance programming language for technical computing
Lcalc: program for calculating with L-functions
Libjgrapht-java: Java library of graph theory data structures and algorithms
Libmatheval1: GNU library for evaluating symbolic mathematical expressions (runtime)
Lp-solve: Solve (mixed integer) linear programming problems
Lrcalc: programs for calculating Littlewood-Richardson coefficients
Lrslib: package to enumerate vertices and extreme rays of a convex polyhedron
Macaulay2: Software system for algebraic geometry research
Magnus: Very simple screen magnifier
Mathicgb: Compute Groebner bases (command line tool)
Mathomatic: portable Computer Algebra System (CAS)
Matita: ??? missing short description for package matita :-(
Maxima-sage: Computer algebra system -- base system
Mcl: Markov Cluster algorithm
Minisat: Fast and lightweight SAT solver
Model-builder: graphical ODE simulator
Mumps-test: Example/test binaries using MUMPS
Nauty: library for graph automorphisms -- interface and tools
Netgen: Automatic 3d tetrahedral mesh generator
Normaliz: math computing tools for affine monoids, rational polytopes and cones
Octave: GNU Octave language for numerical computations
Palp: Package for Analyzing Lattice Polytopes
Pari-gp: PARI/GP Computer Algebra System binaries
Persalys: GUI for uncertainty treatment and variabilities management
Phcpack: general-purpose solver for polynomial systems (command line)
Planarity: Program for planarity-related graph algorithms
Polylib-utils: Various tools using libpolylib
Proofgeneral: generic frontend for proof assistants
Prover9: theorem prover and countermodel generator
Pyomo: ??? missing short description for package pyomo :-(
Python3-deap: Distributed Evolutionary Algorithms in Python3
Python3-dolfin: Base Python interface for DOLFIN (Python 3)
Python3-ffc: compiler for finite element variational forms (Python 3)
Python3-minieigen: Wrapper of parts of the Eigen library (Python 3)
Python3-openturns: Python3 front-end of OpenTURNS (aka TUI)
Python3-persalys: GUI for uncertainty treatment (Python bindings)
Python3-sagenb-export: Convert SageNB Notebooks (Python 3)
Python3-ufl: unified language for form-compilers (Python 3)
Qepcad: quantifier elimination tool
Qhull-bin: calculate convex hulls and related structures (utilities)
Qsopt-ex: Exact linear programming solver
Regina-normal: mathematical software for low-dimensional topology
Rheolef: efficient Finite Element environment
Rubiks: Small collection of Rubik's cube solvers
Sagemath: Open Source Mathematical Software
Sagemath-database-conway-polynomials: Database of Conway polynomials
Sagemath-database-cremona-elliptic-curves: Databases of elliptic curves over the rationals
Sagemath-database-elliptic-curves: Databases for elliptic curves
Sagemath-database-graphs: Databases of graphs
Sagemath-database-mutually-combinatorial-designs: Databases of combinatorial designs
Sagemath-database-polytopes: Databases of polytopes
Science-statistics: Debian Science Statistics packages
Scilab: Scientific software package for numerical computations
Scilab-ann: ??? missing short description for package scilab-ann :-(
Scotch: programs and libraries for graph, mesh and hypergraph partitioning
Singular: Computer Algebra System for Polynomial Computations
Snappea: program for creating and studying hyperbolic 3-manifolds
Surf-alggeo: visualization of real algebraic geometry
Sympow: mathematical program for SYMmetric POWer elliptic curve L-functions -- program
Tachyon: Parallel/Multiprocessor Standalone Ray Tracer - metapackage
Tetgen: Quality Tetrahedral Mesh Generator
Topcom: Triangulations Of Point Configurations and Oriented Matroids
Toulbar2: Exact combinatorial optimization for Graphical Models
Wxmaxima: GUI for the computer algebra system Maxima
Xcas: Computer Algebra System - console and graphical calculator
Xmaxima: Computer algebra system -- x interface
Xmds: ??? missing short description for package xmds :-(
Xmds2: eXtensible Multi-Dimensional Simulator

Official Debian packages with lower relevance

Ann-tools: Approximate Nearest Neighbor Searching library (tools)
Evolver-nox: Surface Evolver - with no X support
Evolver-ogl: Surface Evolver - with OpenGL display
Gap-gapdoc: GAPDoc - A Meta Package for GAP Documentation
Gap-io: low level C library IO bindings for GAP
Gap-online-help: GAP computer algebra system, online help
Gap-scscp: SCSCP protocol in GAP
Gmp-ecm: Factor integers using the Elliptic Curve Method
Libspectra-dev: library for large scale eigenvalue problems (development files)
Netgen-doc: Automatic 3d tetrahedral mesh generator documentation
Primesieve: fast prime number generator C/C++ library
R-cran-evd: GNU R Functions for extreme value distributions
Sagetex: Embed Sage code and plots into LaTeX

Debian packages in contrib or non-free

Matlab-support: distro integration for local MATLAB installations

Packaging has started and developers might try the packaging code in VCS

Isabelle: generic theorem proving environment

Unofficial packages built by somebody else

Octaviz: 3D visualization system for Octave

Mathematics-dev - Debian Science Mathematics-dev packages

This metapackage will install Debian Science packages which might be helpful for development of applications for Mathematics.

You might also be interested in the science-mathematics metapackage.

Official Debian packages with high relevance

Code-saturne-bin: General purpose Computational Fluid Dynamics (CFD) software - binaries
Code-saturne-include: General purpose Computational Fluid Dynamics (CFD) software - includes
Coinor-libcoinmp-dev: Simple C API for COIN-OR Solvers Clp and Cbc -- development
Cppad: Automatic Differentiation of C++ algorithms, dummy package
Fenics: Automated Solution of Differential Equations
Fflas-ffpack: Finite field linear algebra subroutines/package
Fftw-dev: library for computing Fast Fourier Transforms
Gap-dev: GAP computer algebra system, compiler and development files
Jel-java: Library for evaluating algebraic expressions in Java
Libalglib-dev: Development files for the alglib library
Libann-dev: Approximate Nearest Neighbor Searching library (development files)
Libarmadillo-dev: streamlined C++ linear algebra library - Headers
Libarpack++2-dev: Object-oriented version of the ARPACK package (development)
Libarpack2-dev: Fortran77 subroutines to solve large scale eigenvalue problems (development)
Libatlas-base-dev: Automatically Tuned Linear Algebra Software, generic static
Libbasix-dev: Finite Element Basis Function Definition Runtime Library (development headers)
Libblas-dev: Basic Linear Algebra Subroutines 3, static library
Libblis-dev: BLAS-like Library Instantiation Software Framework (dev,32bit,meta)
Libblitz0-dev: C++ template class library for scientific computing - libdev
Libbraiding-dev: computations on braid groups (development files)
Libbrial-dev: polynomials over Boolean Rings, core development files
Libcdd-dev: Library for finding vertices of convex polytopes, development
Libcgal-dev: ??? missing short description for package libcgal-dev :-(
Libcminpack-dev: Nonlinear equations and nonlinear least squares problems - development
Libcneartree-dev: Library and headers for solving the Nearest Neighbor Problem
Libcombblas-dev: an extensible parallel graph library for graph analytics
Libcqrlib-dev: Library and headers for quaternion arithmetic and rotation math
Libcvector-dev: ANSI C implementation of dynamic arrays (development files)
Libdeal.ii-dev: Differential Equations Analysis Library - development files
Libdogleg-dev: Powell's dog-leg nonlinear least squares solver for sparse matrices
Libdolfinx-dev: Shared links and header files for DOLFIN
Libdouble-conversion-dev: routines to convert IEEE floats to and from strings (development files)
Libdune-grid-dev: toolbox for solving PDEs -- grid interface (development files)
Libec-dev: Library for modular symbols and elliptic curves over Q (development)
Libecm-dev: dummy package
Libeigen3-dev: lightweight C++ template library for linear algebra
Libfeel++-dev: ??? missing short description for package libfeel++-dev :-(
Libfftw3-dev: Library for computing Fast Fourier Transforms - development
Libflame-dev: High-performance object-based library for DLA computations (dev)
Libflann-dev: Fast Library for Approximate Nearest Neighbors - development
Libflint-arb-dev: ??? missing short description for package libflint-arb-dev :-(
Libflint-dev: C library for number theory, development files
Libfplll-dev: Library for LLL-reduction of Euclidean lattices, development
Libfreefem++-dev: Provides the development files of the FreeFem++ FE suite
Libfreefem-dev: Development library, header files and manpages
Libfrobby-dev: Computations with monomial ideals (development tools)
Libgemmlowp-dev: small self-contained low-precision GEMM library
Libgf2x-dev: Routines for fast arithmetic in GF(2)[x] (development files)
Libgivaro-dev: arithmetic and algebraic computations - development files
Libglpk-dev: linear programming kit - development files
Libglpk-java: Java binding to the GNU Linear Programming Kit
Libgnuplot-iostream-dev: C++ programming interface for gnuplot. Headers
Libgsl0-dev: ??? missing short description for package libgsl0-dev :-(
Libhomfly-dev: compute the homfly polynomial of a link (development files)
Libhypre-dev: High Performance Matrix Preconditioners - Development Files
Libigraph-dev: library for creating and manipulating graphs - development files
Libiml-dev: Integer Matrix Library, development files
Libitsol-dev: ITerative SOLvers - devel
Libjama-dev: C++ Linear Algebra Package
Libjgrapht0.6-java: mathematical graph theory library for Java
Libjgrapht0.8-java: mathematical graph theory library for Java
Liblapack-dev: Library of linear algebra routines 3 - static version
Liblbfgs-dev: L-BFGS solver for unconstrained nonlinear optimization problems
Liblfunction-dev: development files for liblfunction
Liblibleidenalg-dev: implementation of the Leiden algorithm in C++ - headers
Liblinbox-dev: Library for exact linear algebra - development files
Liblip-dev: reliable interpolation of multivariate scattered data
Liblrcalc-dev: library for calculating Littlewood-Richardson coefficients - development files
Libm4ri-dev: Method of the Four Russians Inversion library, development files
Libm4rie-dev: extended Method of the Four Russians Inversion library, development files
Libmadlib-dev: mesh adaptation library
Libmatheval-dev: GNU library for evaluating symbolic mathematical expressions (development)
Libmathic-dev: C++ library for Groebner basis computation (developer tools)
Libmathicgb-dev: Compute Groebner bases (developer tools)
Libmatio-dev: MATLAB MAT File I/O Library - development files
Libmeschach-dev: development files for meschach
Libmeshsdfilter-dev: Static/Dynamic Filtering for Mesh Geometry
Libmpfi-dev: multiple precision floating-point interval computation library -- libdev
Libmpfrc++-dev: multi-precision floating point number class for C++
Libmps-dev: Multiprecision polynomial solver (development)
Libmuparser-dev: fast mathematical expressions parse library (development)
Libnauty2-dev: ??? missing short description for package libnauty2-dev :-(
Libnewmat10-dev: matrix manipulations library (C++ headers files)
Libnfft3-dev: development files for the NFFT library
Libnglib-dev: Automatic 3d tetrahedral mesh generator development files
Libopenblas-dev: Optimized BLAS (linear algebra) library (dev, meta)
Libopenmesh-dev: Tools for representing and manipulating polygonal meshes
Libopenturns-dev: headers and development libraries for OpenTURNS
Libp4est-dev: Algorithms for Parallel Adaptive Mesh Refinement - development files
Libparsington-java: mathematical expression parser for Java
Libplb-dev: CFD solver based on the lattice Boltzmann method. Development files
Libpolybori-dev: ??? missing short description for package libpolybori-dev :-(
Libpolybori-groebner-dev: ??? missing short description for package libpolybori-groebner-dev :-(
Libprimesieve-dev: fast prime number generator C/C++ library -- libdev
Libpynac-dev: Engine for symbolic geometric calculus for Python (development files)
Libqcustomplot-dev: Qt C++ widget for plotting - header
Libqd-dev: Double-double and quad double types in C++ and F90
Libqhull-dev: calculate convex hulls and related structures (development files)
Libqsopt-ex-dev: Exact linear programming solver -- development files
Libquadrule-dev: Development files for quadrule
Libranlip-dev: generates random variates with multivariate Lipschitz density
Libratpoints-dev: development files for libratpoints
Librw-dev: Compute rank-width and rank-decompositions of graphs (development)
Libsaclib-dev: library of C programs for computer algebra (development)
Libscscp1-dev: IMCCE SCSCP C Library -- development package
Libscythestat-dev: header files for Scythe statistics library
Libsleef-dev: SLEEF Vectorized Math Library (development)
Libsopt-dev: Development package for Sparse OPTimisation library
Libsparskit-dev: basic tool-kit for sparse matrix computations - devel
Libspfft-dev: Sparse 3D FFT library with MPI, OpenMP, CUDA / ROCm support (development files)
Libspooles-dev: SPOOLES SParse Object Oriented Linear Equations Solver development files
Libstopt-dev: library for stochastic optimization problems (development package)
Libstxxl-dev: Development libraries for STXXL
Libsuitesparse-dev: libraries for sparse matrices computations (development files)
Libsuperlu-dev: Direct solution of large, sparse systems of linear equations
Libsuperlu-dist-dev: Highly distributed solution of sparse linear equations
Libsymmetrica2-dev: transitional package
Libtachyon-dev: ??? missing short description for package libtachyon-dev :-(
Libtnt-dev: interface for scientific computing in C++
Libug-dev: ??? missing short description for package libug-dev :-(
Libvdt-dev: vectorised math library - development files
Libviennacl-dev: Scientific computing library written in C++ based on OpenCL
Libxsmm-dev: Library for matrix operations and deep learning primitives
Libzn-poly-dev: development files for libzn-poly
Minpack-dev: nonlinear equations and nonlinear least squares static library
Petsc-dev: Virtual package depending on latest PETSc development package
Python3-asteval: minimalistic evaluator of Python 3 expression using ast module
Python3-basix: Finite Element Basis Function Definition Runtime Library (Python 3)
Python3-brial: polynomials over Boolean Rings, Python 3 module
Python3-bumps: data fitting and Bayesian uncertainty modeling for inverse problems (Python 3)
Python3-cryptominisat: Python bindings for the CryptoMiniSat SAT solver (Python 3)
Python3-cvxopt: Python3 package for convex optimization
Python3-cypari2: Python interface to PARI -- Python 3
Python3-cython-blis: Fast BLAS-like operations from Python and Cython, without the tears (Python 3)
Python3-dmsh: High-quality 2D mesh generator based on distmesh
Python3-dolfin: Base Python interface for DOLFIN (Python 3)
Python3-dolfinx: Python interface for DOLFIN (Python 3)
Python3-dtcwt: Dual-Tree Complex Wavelet Transform library for Python 3
Python3-ffc: compiler for finite element variational forms (Python 3)
Python3-ffcx: next-gen compiler for finite element variational forms (Python 3)
Python3-gimmik: generator of matrix multiplication kernels (Python 3)
Python3-gpyfft: Wrapper for the OpenCL FFT library clFFT (Python 3)
Python3-linop: ??? missing short description for package python3-linop :-(
Python3-ltfatpy: Large Time-Frequency Toolbox (LTFAT) in Python
Python3-meshplex: fast tools for simplex meshes (Python 3)
Python3-meshzoo: simple geometric meshes (Python 3)
Python3-morfessor: unsupervised and semi-supervised morphological segmentation
Python3-mpi4py-fft: a Python package for computing Fast Fourier Transforms (FFTs) with MPI
Python3-numexpr: Fast numerical array expression evaluator for Python 3 and NumPy
Python3-numpy: Fast array facility to the Python language (Python 3)
Python3-openturns: Python3 front-end of OpenTURNS (aka TUI)
Python3-optlang: sympy based mathematical programming language (Python 3)
Python3-petsc4py: Python 3 bindings for PETSc libraries
Python3-pyemd: Python library for the Earth Mover's Distance with NumPy
Python3-pyfftw: Pythonic wrapper around FFTW - Python 3
Python3-pynfft: Python bindings for the NFFT3 library - Python 3
Python3-pyviennacl: ??? missing short description for package python3-pyviennacl :-(
Python3-slepc4py: Python 3 bindings for SLEPc libraries
Python3-stopt: library for stochastic optimization problems (Python 3 bindings)
Python3-swiglpk: Plain Python bindings for the GNU Linear Programming Kit (Python 3)
Python3-ufl: unified language for form-compilers (Python 3)
Sfftw-dev: library for computing Fast Fourier Transforms
Slepc-dev: Scalable Library for Eigenvalue Problem Computations
Trilinos-all-dev: object-oriented framework for large-scale problems - development files (ALL)
Veccore-dev: simple abstraction layer on top of other vectorization libraries

Official Debian packages with lower relevance

Cfortran: Header file permitting Fortran routines to be called in C/C++
Fflas-ffpack-dev-doc: FFLAS-FFPACK Developer Documentation
Fflas-ffpack-user-doc: FFLAS-FFPACK User Documentation
Givaro-dev-doc: Developer Documentation for Givaro (obsolete)
Givaro-user-doc: User Documentation for Givaro (obsolete)
Jsurf-alggeo: Java based visualization library for real algebraic geometry
Libbdd-dev: Binary decision-diagram library (development)
Libdune-functions-dev: toolbox for solving PDEs -- interface for functions (development files)
Libdune-grid-glue-dev: toolbox for solving PDEs -- compute couplings between grids (development files)
Libdune-istl-dev: toolbox for solving PDEs -- iterative solvers (development files)
Libdune-localfunctions-dev: toolbox for solving PDEs -- local basis (development files)
Libdune-pdelab-dev: toolbox for solving PDEs -- discretization module (development files)
Libdune-typetree-dev: toolbox for solving PDEs -- typed tree template library (development files)
Libdune-uggrid-dev: software framework for finite element methods (development files)
Libitpp-dev: C++ library of signal processing and communication routines: Headers
Libjlapack-java: LAPACK numerical subroutines translated from their Fortran 77 source
Liblrs-dev: package to enumerate vertices and extreme rays (development file)
Libmtj-java: Java library for developing numerical applications
Libnetlib-java: collection of mission-critical software components for linear algebra systems
Libqrupdate-dev: ??? missing short description for package libqrupdate-dev :-(
Libsollya-dev: library for safe floating-point code development -- libdev
Libtet1.5-dev: Quality Tetrahedral Mesh Generator
Openturns-examples: ??? missing short description for package openturns-examples :-(
Python3-msgpack-numpy: serialize numpy arrays using msgpack
Python3-numpy-groupies: performs operations on/with subsets of n-dim arrays
Python3-threadpoolctl: Python helpers for common threading libraries (BLAS, OpenMP)
Sollya: library for safe floating-point code development -- tool

Debian packages in contrib or non-free

Libamgcl-dev: Solves large sparse linear systems with algebraic multigrid method
Libmagma-dev: Matrix Algebra on GPU and Multicore Architectures (dev)
Libmkl-full-dev: Intel® Math Kernel Library (Intel® MKL) (Full Version Dev)
Libparmetis-dev: Parallel Graph Partitioning and Sparse Matrix Ordering Libs: Devel
Libsuitesparse-metis-dev: ??? missing short description for package libsuitesparse-metis-dev :-(
Libtestu01-0-dev: testing suite for uniform random number generators -- libdevel
Python3-amgcl: Solves large sparse linear systems with algebraic multigrid method

Packaging has started and developers might try the packaging code in VCS

Libcblas-dev: Basic Linear Algebra Subroutines 3, static library
Libgismo-dev: Geometry plus simulatiom modules development files
Liblevmar-dev: Levenberg-Marquardt nonlinear least squares algorithm (devel)
Libortools-dev: Google Optimization Tools (development files)
Python3-ortools: Google Optimization Tools (Python library)

Meteorology - Debian Science Meteorology packages

This metapackage is part of the Debian Pure Blend "Debian Science" and installs packages related to Meteorology and Climate.

Official Debian packages with high relevance

Cdftools: Diagnostic tools for NEMO netCDF output
Cdo: Climate Data Operators
Cmor-tables: MIP tables for the Climate Model Output Rewriter library
Coda: Common Data Access framework for Earth science
Cylc-flow: Workflow scheduler
Dballe: ??? missing short description for package dballe :-(
Ferret-vis: Interactive data visualization and analysis environment
Flexpart: Particle Dispersion model for tracing air transport phenomena
Flextra: Trajectory model for tracing air transport phenomena
Fpzip-utils: FP array compression library - tools
Grads: Grid Analysis and Display System for earth science data
Harp: Data harmonization toolset for Earth Observation formats
Libaec-tools: ??? missing short description for package libaec-tools :-(
Libatlas-ecmwf-utils: Numerical weather prediction and climate modelling library - utilities
Libdap-bin: Binaries for the libdap Data Access Protocol library
Libdap-doc: Documentation for the libdap Data Access Protocol library
Libeccodes-tools: GRIB decoding/encoding software (utilities)
Libeckit-utils: C++ toolkit for ECMWF tools and applications - development files
Libemos-bin: ECMWF Interpolation Library - binaries
Libfckit-utils: Library Fortran toolkit for interoperating Fortran with C/C++
Libmetkit-utils: Utilities for the MetKit MARS access library
Magics++: Executables for the magics++ library
Metar: ??? missing short description for package metar :-(
Metview: Interactive data visualization and analysis environment,
Ncl-ncarg: NCAR Command Language and NCAR graphics
Nco: Command-line operators to analyze netCDF files
Ncview: X11 visual browser for NetCDF format files
Odc: Tools for the Observational Data Processing (ODB)
Python3-cdo: Python3 module for Climate Data Operators
Python3-cfgrib: Python 3 module supporting the CF convention in GRIB files
Python3-cmor: Python3 interface to CMOR
Python3-drslib: Library for processing the CMIP5 Data Reference Syntax (Python3)
Python3-eccodes: Python 3 module Python interface to the ecCodes BUFR and GRIB de/encoder
Python3-ferret: Python3 wrapper for the Ferret visualization and analysis environment,
Python3-grib: Python 3 module for reading and writing GRIB files
Python3-gsw: Python 3 implementation of the Thermodynamic Equation of Seawater
Python3-iapws: Python3 implementation of the international APWS-IF97 steam tables
Python3-magics++: Python3 support for Magics++
Python3-metaconfig: Python ConfigParser bootstrapping library (Python3)
Python3-netcdf4: Python 3 interface to the netCDF4 (network Common Data Form) library
Python3-sphere: Python3 interface to the spherepack scientific library.
Xygrib: Weather data visualization, GRIB file viewer

Official Debian packages with lower relevance

Gerris: Fluid Flow Solver
Gnudatalanguage: Free IDL compatible incremental compiler
Octave-octcdf: ??? missing short description for package octave-octcdf :-(
Paraview: Parallel Visualization Application
Python3-openturns: Python3 front-end of OpenTURNS (aka TUI)
R-base: GNU R statistical computation and graphics system

Packaging has started and developers might try the packaging code in VCS

Mbdyn: multibody analysis code

No known packages available but some record of interest (WNPP bug)

Geonetwork: Catalog application to manage spatially referenced resources through the web

Meteorology-dev - Debian Science Meteorology-dev packages

This metapackage will install Debian Science packages which might be helpful for development of applications for Meteorology and Climate.

You might also be interested in the science-meteorology metapackage.

Official Debian packages with high relevance

Ecbuild: Build system for ECMWF software
Fcm: Flexible Configuration Manager
Fftw-dev: library for computing Fast Fourier Transforms
Libaec-dev: Development files for the Adaptive Entropy Coding library
Libatlas-ecmwf-dev: Numerical weather prediction and climate modelling library - dev files
Libblas-dev: Basic Linear Algebra Subroutines 3, static library
Libcdi-dev: Development files for the climate data interface library
Libcmor-dev: Development files for Climate Model Output Rewriter
Libcoarrays-dev: Co-Array Fortran libraries
Libcoda-dev: Development files for the CODA framework for Earth sciences
Libcoda-java: Java interface for Common Data Access Framework
Libdap-dev: ??? missing short description for package libdap-dev :-(
Libeccodes-dev: GRIB and BUFR decoding/encoding software library (development)
Libeccodes-tools: GRIB decoding/encoding software (utilities)
Libeckit-dev: C++ toolkit for ECMWF tools and applications
Libemos-dev: ECMWF Interpolation Library - development
Libfckit-dev: Fortran toolkit for interoperating Fortran with C/C++
Libfftw3-dev: Library for computing Fast Fourier Transforms - development
Libfftw3-doc: Documentation for fftw version 3
Libfpzip-dev: Development files for the FP array compression library
Libgadap-dev: Development and static libraries for GADAP
Libgctp-dev: General Cartographic Transformation Package - development files
Libgrib2c-dev: NCEP GRIB2 library - development files
Libhdfeos-dev: Development files for the HDF-EOS4 library
Libhe5-hdfeos-dev: Development files for the HDF-EOS5 library
Liblapack-dev: Library of linear algebra routines 3 - static version
Liblapack-doc: Library of linear algebra routines 3 - documentation
Liblas-dev: ASPRS LiDAR data translation library - C++ development files
Libmagics++-dev: Development files for ECMWF plotting software MAGICS++
Libmetkit-dev: Development files for the Metkit toolkit
Libncarg-bin: NCAR command-language library - development tools
Libnetcdf-dev: creation, access, and sharing of scientific data
Liboasis3-dev: Development files for OASIS3 climate model coupler
Libodc-dev: Observational Data processing for meteorology
Libopenturns-dev: headers and development libraries for OpenTURNS
Libproj-dev: Cartographic projection library (development files)
Librsl-dev: ??? missing short description for package librsl-dev :-(
Libspfft-dev: Sparse 3D FFT library with MPI, OpenMP, CUDA / ROCm support (development files)
Libsphere-dev: Development files for Spherepack scientific library
Libterralib-dev: C++ library for Geographical Information Systems -- development package
Libudunits2-dev: Development files for the libunits physical units package
Libwreport-dev: library for working with weather reports
Makedepf90: Fortran-90 dependency processor for Makefiles
Mpi-default-dev: Standard MPI development files (metapackage)
Netcdf-bin: Programs for reading and writing NetCDF files
Python3-coda: Python3 interface for CODA science formats library
Python3-esda: Exploratory Spatial Data Analysis
Python3-gpyfft: Wrapper for the OpenCL FFT library clFFT (Python 3)
Python3-openturns: Python3 front-end of OpenTURNS (aka TUI)
Python3-pyfftw: Pythonic wrapper around FFTW - Python 3
Python3-pyswarms: research toolkit for particle swarm optimization in Python
Python3-sasmodels: Theoretical models for small angle scattering (Python 3)
Python3-ulmo: Simple & fast Python 3 access to public hydrology & climatology data
R-cran-rnetcdf: GNU R package that provides an R interface to NetCDF datasets
Sfftw-dev: library for computing Fast Fourier Transforms
Wcslib-dev: Header files and static library for wcslib and pgsbox
Wcslib-doc: API documentation for wcslib

Official Debian packages with lower relevance

Gfortran: GNU Fortran 95 compiler
Ksh: transitional package
Libfeel++-dev: ??? missing short description for package libfeel++-dev :-(
Openturns-examples: ??? missing short description for package openturns-examples :-(
Pkgconf: manage compile and link flags for libraries
Python3-coards: COARDS-compliant time parser (Python 3)
Python3-threadpoolctl: Python helpers for common threading libraries (BLAS, OpenMP)
Udunits-bin: Utility for handling units of physical quantities

Packaging has started and developers might try the packaging code in VCS

Libcblas-dev: Basic Linear Algebra Subroutines 3, static library
Libmbc-dev: multibody analysis code (development files)

Nanoscale physics - Debian Science Nanoscale Physics packages

This metapackage will install Debian Science packages related to Nanoscale Physics, which corresponds to the study of physical systems typically ranging from 1 to 100 nm in size. The properties of such systems usually depend on the number of atoms they are made of, while this number is still relatively large for an accurate description.

The nanoscale is the meeting point of classical and quantum physics. Previous research efforts were considering either smaller systems, for which everybody could develop their own methods and software independently, or much bigger systems, for which it was clearly impossible to provide a fine-grained description. Addressing the issues raised by the nanoscale requires however cooperative and coordinated efforts in a multidisciplinary context. This metapackage is part of such an endeavor.

You might also be interested in the debtag field::physics and, depending on your focus, in the physics and education-physics metapackages.

Official Debian packages with high relevance

Abinit: package for electronic structure calculations
Ase: Atomic Simulation Environment
Avogadro: Molecular Graphics and Modelling System
Binoculars: Surface X-ray diffraction 2D detector data reduction
Cadabra: ??? missing short description for package cadabra :-(
Cbflib-bin: utilities to manipulate CBF files
Cif-linguist: transform CIF data among CIF formats and dialects
Cod-tools: tools for manipulating CIF format files
Cp2k: Ab Initio Molecular Dynamics
Drawxtl: crystal structure viewer
Etsf-io: Binary tools to check, merge and read ETSF files
Feynmf: set of LaTeX macros for creating Feynman diagrams
Finalcif: editor for Crystallographic Information Format
Fityk: general-purpose nonlinear curve fitting and data analysis
Garlic: visualization program for biomolecules
Gdis: molecular and crystal model viewer
Ggobi: Data visualization system for high-dimensional data
Ghemical: GNOME molecular modelling environment
Gnuplot: Command-line driven interactive plotting program.
Gpaw: DFT and beyond within the projector-augmented wave method
Gperiodic: periodic table application
Grace: XY graphing and plotting tool
Graphviz: rich set of graph drawing tools
Gsl-bin: GNU Scientific Library (GSL) -- binary package
Gwyddion: Scanning Probe Microscopy visualization and analysis tool
Libblas3: Basic Linear Algebra Reference implementations, shared library
Libgsl0ldbl: ??? missing short description for package libgsl0ldbl :-(
Liblapack3: Library of linear algebra routines 3 - shared version
Libssm-bin: macromolecular superposition library - binaries
Mayavi2: scientific visualization package for 2-D and 3-D data
Mpich: ??? missing short description for package mpich :-(
Mpqc: Massively Parallel Quantum Chemistry Program
Nco: Command-line operators to analyze netCDF files
Ncview: X11 visual browser for NetCDF format files
Netcdf-bin: Programs for reading and writing NetCDF files
Nexus-tools: NeXus scientific data file format - applications
Octave: GNU Octave language for numerical computations
Openkim-models: Models and model-drivers for KIM-API
Openmpi-bin: high performance message passing library -- binaries
Openmx: package for nano-scale material simulations
Psi3: Quantum Chemical Program Suite
Python3-lmfit: Least-Squares Minimization with Constraints (Python 3)
Python3-scipy: scientific tools for Python 3
Python3-sympy: Computer Algebra System (CAS) in Python (Python 3)
Pyxplot: data plotting program producing publication-quality output
Quantum-espresso: Electronic-Structure and Ab-Initio Molecular Dynamics Suite
Sasview: Small Angle Scattering Analysis suite
Science-numericalcomputation: Debian Science Numerical Computation packages
Scilab: Scientific software package for numerical computations
Udav: library for scientific graphs (window interface)
V-sim: Visualize atomic structures
Voronota: Voronoi diagram-based tool to find atom contacts

Official Debian packages with lower relevance

Axiom: General purpose computer algebra system: main binary and modules
Dx: OpenDX (IBM Visualization Data Explorer) - main package
Dx-doc: OpenDX (IBM Visualization Data Explorer) - documentation
Dxsamples: Sample programs for the OpenDX Data Explorer
Feel++-apps: ??? missing short description for package feel++-apps :-(
Gpiv: ??? missing short description for package gpiv :-(
Gpivtools: ??? missing short description for package gpivtools :-(
Hdf5-helpers: HDF5 - Helper tools
Hdf5-tools: HDF5 - Runtime tools
Libgraphviz-perl: Perl interface to the GraphViz graphing tool
Maxima: Computer algebra system -- base system
Mpich-doc: ??? missing short description for package mpich-doc :-(
Netcdf-doc: Documentation for NetCDF
Openmpi-doc: high performance message passing library -- man pages
Pymca: Applications and toolkit for X-ray fluorescence analysis -- scripts
Python3-pygraphviz: Python interface to the Graphviz graph layout and visualization package (Python 3)
Qtiplot: data analysis and scientific plotting
Scidavis: ??? missing short description for package scidavis :-(
Science-mathematics: Debian Science Mathematics packages
Science-statistics: Debian Science Statistics packages

Packaging has started and developers might try the packaging code in VCS

Fdmnes: calculates spectra of different spectroscopies

Unofficial packages built by somebody else

Octaviz: 3D visualization system for Octave

No known packages available but some record of interest (WNPP bug)

Exciting: All-electron full-potential electronic-structure code

No known packages available

Ape: Atomic pseudopotential generator
Atompaw: PAW atomic dataset generator
Bigdft: Wavelet-based electronic-structure calculations
Liblevmar-2-6: Levenberg-Marquardt nonlinear least squares algorithms
Octopus: Real-space TDDFT-based electronic-structure code
Wannier90-1: Maximally Localized Wannier Functions
Wannier90-2: Maximally Localized Wannier Functions

Nanoscale physics development - Debian Science Nanoscale Physics development packages

This metapackage will install Debian Science packages which might be helpful for the development of applications for Nanoscale Physics.

You might also be interested in the debtag field::physics and, depending on your focus, in the nanoscale-physics, physics and education-physics metapackages.

Official Debian packages with high relevance

Abinit-doc: package for electronic structure calculations (Documentation)
Gsl-bin: GNU Scientific Library (GSL) -- binary package
Libblas-dev: Basic Linear Algebra Subroutines 3, static library
Libcbf-dev: development files for CBFlib
Libccp4-dev: CCP4 core functionality - development files
Libcctbx-dev: Computational Crystallography Toolbox - headers
Libcexceptions-dev: C exception handling library (development files)
Libclipper-dev: object oriented development kit for crystallographic computing
Libcod-precision-perl: COD precision handling module for Perl language
Libcoordgen-dev: 2D coordinate generation for chemical compounds - header files
Libetsf-io-dev: Static libraries and Fortran module files of ETSF_IO
Libetsf-io-doc: Developer documentation API and tutorials for ETSF_IO
Libfftw3-dev: Library for computing Fast Fourier Transforms - development
Libgsl0-dev: ??? missing short description for package libgsl0-dev :-(
Libhdf5-dev: HDF5 - development files - serial version
Libhepmc3-dev: Event Record for Monte Carlo Generators - development files
Libkim-api-dev: Development files for KIM-API
Liblapack-dev: Library of linear algebra routines 3 - static version
Liblapack-doc: Library of linear algebra routines 3 - documentation
Libmaeparser-dev: Development files to parse Schrödinger Maestro files
Libmctc-lib-dev: modular computation tool chain library (development files)
Libmmdb2-dev: macromolecular coordinate library - development files
Libmpich-dev: ??? missing short description for package libmpich-dev :-(
Libncrystal-dev: Monte Carlo simulations of neutrons in crystals (dev files)
Libnetcdf-dev: creation, access, and sharing of scientific data
Libnexus-dev: NeXus scientific data file format - development libraries
Libnexus-java: NeXus scientific data file format - java libraries
Liboce-ocaf-dev: ??? missing short description for package liboce-ocaf-dev :-(
Liboce-visualization-dev: ??? missing short description for package liboce-visualization-dev :-(
Libopenmpi-dev: high performance message passing library -- header files
Libroot-math-mlp-dev: ??? missing short description for package libroot-math-mlp-dev :-(
Libroot-montecarlo-vmc-dev: ??? missing short description for package libroot-montecarlo-vmc-dev :-(
Libroot-tmva-dev: ??? missing short description for package libroot-tmva-dev :-(
Libscalapack-mpi-dev: Scalable Linear Algebra Package - Dev files for MPI
Libsis-jhdf5-java: ??? missing short description for package libsis-jhdf5-java :-(
Libspfft-dev: Sparse 3D FFT library with MPI, OpenMP, CUDA / ROCm support (development files)
Libssm-dev: macromolecular superposition library - development files
Libsymspg-dev: C library for crystal symmetry determination (development files)
Libufo-dev: Library for high-performance, GPU-based computing - devel
Libxc-dev: Library of Exchange-Correlation Functionals (development files)
Netcdf-doc: Documentation for NetCDF
Pyfai: Fast Azimuthal Integration scripts
Python3-binoculars: Surface X-ray diffraction 2D detector data reduction - Python3
Python3-cctbx: Python Toolbox for crystallography
Python3-cif2cell: prepare CIF files for electronic structure calculations
Python3-fabio: I/O library for images produced by 2D X-ray detector - Python3
Python3-gpyfft: Wrapper for the OpenCL FFT library clFFT (Python 3)
Python3-nxs: NeXus scientific data file format - Python 3 binding
Python3-periodictable: Extensible periodic table of the elements (Python 3)
Python3-pycodcif: error-correcting CIF parser - Python3 bindings
Python3-pyfftw: Pythonic wrapper around FFTW - Python 3
Python3-qutip: python package for simulating the dynamics of open quantum systems
Python3-sasdata: Data file handling for small-angle scattering (Python 3)
Python3-sasmodels: Theoretical models for small angle scattering (Python 3)
R-cran-rnetcdf: GNU R package that provides an R interface to NetCDF datasets
Root-system: ??? missing short description for package root-system :-(
Scalapack-doc: Scalable Linear Algebra Package Documentation
Science-mathematics-dev: Debian Science Mathematics-dev packages
Ufo-filters: Set of plugins for ufo-core - runtime
Vecgeom-dev: geometry library for particle-detector simulation - development files

Official Debian packages with lower relevance

Libfeel++-dev: ??? missing short description for package libfeel++-dev :-(
Libfftw3-doc: Documentation for fftw version 3
Oce-draw: ??? missing short description for package oce-draw :-(
Python3-h5py: general-purpose Python interface to hdf5
Python3-netcdf4: Python 3 interface to the netCDF4 (network Common Data Form) library
Python3-threadpoolctl: Python helpers for common threading libraries (BLAS, OpenMP)

Debian packages in contrib or non-free

Gsl-doc-info: GNU Scientific Library (GSL) Reference Manual in info
Gsl-doc-pdf: GNU Scientific Library (GSL) Reference Manual in pdf
Gsl-ref-html: GNU Scientific Library (GSL) Reference Manual in html
Gsl-ref-psdoc: GNU Scientific Library (GSL) Reference Manual in postscript

Packaging has started and developers might try the packaging code in VCS

Libcblas-dev: Basic Linear Algebra Subroutines 3, static library

No known packages available

Libpspio-dev: Library to read and write pseudopotentials
Wannier90-1-dev: Maximally Localized Wannier Functions - Development files

Cognitive neuroscience - Debian Science packages for Cognitive Neuroscience

This metapackage will install Debian packages which might be useful for scientists doing cognitive neuroscience research. This comprises the full research process from conducting psychophysical experiments, over data acquisition and analysis, to visualization and typesetting of scientific results.

Official Debian packages with high relevance

Amide: software for Medical Imaging
Caret: ??? missing short description for package caret :-(
Dicom3tools: DICOM medical image files manipulation and conversion tools
Dicomnifti: ??? missing short description for package dicomnifti :-(
Fslview: ??? missing short description for package fslview :-(
Itksnap: semi-automatic segmentation of structures in 3D images
Medcon: Medical Image (DICOM, ECAT, ...) conversion tool
Minc-tools: MNI medical image format tools
Mriconvert: ??? missing short description for package mriconvert :-(
Mricron: magnetic resonance image conversion, viewing and analysis
Nifti-bin: tools shipped with the NIfTI library
Nifti2dicom: convert 3D medical images to DICOM 2D series
Praat: program for speech analysis and synthesis
Psignifit: Fitting and testing hypotheses about psychometric functions
Python3-nibabel: Python3 bindings to various neuroimaging data formats
Python3-pydicom: DICOM medical file reading and writing (Python 3)
Python3-pyxnat: Interface to access neuroimaging data on XNAT servers
Python3-statsmodels: Python3 module for the estimation of statistical models
Qnifti2dicom: convert 3D medical images to DICOM 2D series (gui)
Voxbo: processing, statistical analysis, and display of brain imaging data
Xmedcon: Medical Image (DICOM, ECAT, ...) conversion tool (GUI)

Official Debian packages with lower relevance

Connectomeviewer: Interactive Analysis and Visualization for MR Connectomics
Python-mvpa2: ??? missing short description for package python-mvpa2 :-(
Python3-bioxtasraw: process biological small angle scattering data
Science-psychophysics: Debian Science packages for Psychophysics
Science-typesetting: Debian Science typesetting packages

Debian packages in contrib or non-free

Fsl: transitional dummy package

Packaging has started and developers might try the packaging code in VCS

Bioimagesuite: integrated image analysis software suite
Debruijn: De Bruijn cycle generator
Freesurfer: analysis and visualization of functional brain imaging data
Openmeeg-tools: openmeeg library -- command line tools
Slicer: software package for visualization and image analysis - main application
Xnat: platform for data management and productivity tasks in neuroimaging

Unofficial packages built by somebody else

Eeglab: toolbox for processing and visualization of electrophysiological data
Mni-autoreg: MNI average brain (305 MRI) stereotaxic registration model
Mni-n3: MNI Non-parametric Non-uniformity Normalization

No known packages available but some record of interest (WNPP bug)

Fieldtrip: toolbox for MEG and EEG analysis
Pysurfer: visualize Freesurfer's data in Python
Spm8: analysis of brain imaging data sequences

No known packages available

Brainvisa: image processing factory for MR images
Hid: database management system for clinical imaging
Iqr: large-scale multi-level neuronal systems simulator

Neuroscience datasets - Debian Science packages for Neuroscience Datasets

This metapackage will install Debian packages that provide neuroscientific datasets. These datasets can be useful as common data files for applications (e.g. stereotaxic atlases), as example data for online tutorials or teaching, and as input data for analysis algorithms in demonstrations or test suites.

Packaging has started and developers might try the packaging code in VCS

Fsl-bangor-cerebellar-atlas: probabilistic atlas of the human cerebellum
Fsl-harvard-oxford-atlases: probabilistic atlas of human cortical brain areas (lateralized)
Fsl-jhu-dti-whitematter-atlas: human brain white-matter atlas
Fsl-juelich-histological-atlas: brain atlas based on cyto- and myelo-architectonic segmentations
Fsl-mni-structural-atlas: hand-segmented single-subject human brain atlas
Fsl-oxford-thalamic-connectivity-atlas: probabilistic brain atlas of thalamic white-matter connectivity
Fsl-talairach-daemon-atlas: structural anatomy labels of the Talairach atlas
Haxby2001-faceobject: face and object processing in ventral temporal cortex (fMRI)
Mclaren-rhesus-macaque-atlas: MRI-based brain atlas of the rhesus macaque monkey
Mni-colin27-nifti: Talairach stereotaxic space template
Sri24-atlas: MRI-based brain atlas of normal adult human brain anatomy

Unofficial packages built by somebody else

Mni-icbm152-nlin-2009: MNI stereotaxic space human brain template

Modeling of neural systems - Debian Science packages for modeling of neural systems

This metapackage will install Debian packages which might be useful for scientists interested in modeling of real neural systems at different levels (from single neuron to complex networks).

The selection of packages is targeting the application of simulation techniques. Methods developers are referred to the science-statistics, science-imageanalysis, science-numericalcomputation, med-imaging, and med-imaging-dev metapackages for a variety of additional software that might be useful for neuroscience research.

Official Debian packages with high relevance

Cnrun: ??? missing short description for package cnrun :-(
Neuron: Simulation environment for computational models of neurons
Python3-brian: simulator for spiking neural networks

Official Debian packages with lower relevance

Python3-pynn: simulator-independent specification of neuronal network models
Xppaut: Phase Plane Plus Auto: Solves many kinds of equations

Packaging has started and developers might try the packaging code in VCS

Nest: A simulator for networks of spiking neurons

No known packages available but some record of interest (WNPP bug)

Pcsim: simulator of heterogeneous networks of neurons and synapses

No known packages available

Invt: iLab Neuromorphic Vision C++ Toolkit
Moose: multiscale simulation environment for neuroscience

Numerical computation - Debian Science Numerical Computation packages

This metapackage will install Debian Science packages useful for numerical computation. The packages provide an array oriented calculation and visualisation system for scientific computing and data analysis. These packages are similar to commercial systems such as Matlab and IDL.

Official Debian packages with high relevance

Admesh: Tool for processing triangulated solid meshes. Binary
Algotutor: program for observing the intermediate steps of algorithm
Calculix-ccx: Three-Dimensional Structural Finite Element Program
Calculix-cgx: Calculix cgx is a 3-dimensional pre- and post-processor for fem
Coinor-cbc: Coin-or branch-and-cut mixed integer programming solver
Coinor-clp: Coin-or linear programming solver
Coinor-symphony: COIN-OR solver for mixed-integer linear programs
Esys-particle: Software for particle-based numerical modelling (MPI version)
Freemat: mathematics framework (mostly matlab compatible)
Gnudatalanguage: Free IDL compatible incremental compiler
Iep: transitional dummy package for IEP
Ipython3: Enhanced interactive Python 3 shell
Julia: high-performance programming language for technical computing
Lammps: Molecular Dynamics Simulator
Libadolc-dev: ADOLC development libs and headers
Libarrayfire-unified-dev: ??? missing short description for package libarrayfire-unified-dev :-(
Libceres-dev: nonlinear least squares minimizer (development files)
Libclblas-dev: development files for clBLAS
Libclfft-dev: development files for clFFT
Libclsparse-dev: ??? missing short description for package libclsparse-dev :-(
Libcolpack-dev: Specialized graph vertex coloring library, development files
Libdune-grid-dev: toolbox for solving PDEs -- grid interface (development files)
Libopengm-dev: ??? missing short description for package libopengm-dev :-(
Libppl-dev: Parma Polyhedra Library (development)
Libqsopt-ex-dev: Exact linear programming solver -- development files
Librsb-dev: shared-memory Sparse BLAS library using the RSB matrix format (development)
Libsleef-dev: SLEEF Vectorized Math Library (development)
Libsuitesparse-dev: libraries for sparse matrices computations (development files)
Libsundials-dev: Package providing everything for SUNDIALS dev work
Libtoon-dev: C++ numerics library designed for large numbers of small matrices
Libtoontag-dev: TooN Algorithm Library - development files
Liggghts: Open Source DEM Particle Simulation Software.
Metis: Serial Graph Partitioning and Fill-reducing Matrix Ordering. Binaries
Octave: GNU Octave language for numerical computations
Pdl: perl data language: Perl extensions for numerics
Psurface: piecewise linear bijections between triangulated surfaces -- utilities
Python3-arrayfire: ??? missing short description for package python3-arrayfire :-(
Python3-bitstring: Python module for manipulation of binary data (Python 3)
Python3-csa: Connection-Set Algebra (CSA) implemented in Python
Python3-deap: Distributed Evolutionary Algorithms in Python3
Python3-escript: Escript/Finley finite elements Python3 system (with OpenMP)
Python3-escript-mpi: (OpenMP + MPI)
Python3-guiqwt: efficient 2D data-plotting library - Python 3
Python3-lmfit: Least-Squares Minimization with Constraints (Python 3)
Python3-matplotlib: Python based plotting system in a style similar to Matlab
Python3-numpy: Fast array facility to the Python language (Python 3)
Python3-ppl: Python interface to PPL -- Python 3
Python3-pysph: Open-source framework for Smoothed Particle Hydrodynamics
Python3-pyswarms: research toolkit for particle swarm optimization in Python
Python3-resampy: Efficient signal resampling
Python3-rioxarray: rasterio xarray extension
Python3-scipy: scientific tools for Python 3
Python3-sfepy: Simple Finite Elements in Python
Python3-sparse: multidimensional sparse arrays for Python
Python3-tables: Hierarchical database for Python3 based on HDF5
Python3-theano: CPU/GPU math expression compiler for Python 3
Python3-woo: ??? missing short description for package python3-woo :-(
Python3-xarray: N-D labeled arrays and datasets in Python 3
Pyzo: interactive editor for scientific Python
Qsopt-ex: Exact linear programming solver
R-base: GNU R statistical computation and graphics system
R-cran-nleqslv: GNU R package for solving systems of nonlinear equations
Scilab: Scientific software package for numerical computations
Scilab-ann: ??? missing short description for package scilab-ann :-(
Sdpb: Semidefinite program solver
Spyder: Richly-featured Python IDE
Toulbar2: Exact combinatorial optimization for Graphical Models
Vitables: graphical tool to browse and edit PyTables and HDF5 files
Xtensor-dev: multi-dimensional arrays with broadcasting (transition package)
Yade: Platform for discrete element modeling
Yorick: interpreted language and scientific graphics

Official Debian packages with lower relevance

Calculix-ccx-doc: Three-Dimensional Structural Finite Element Program (documentation files)
Calculix-ccx-test: Three-Dimensional Structural Finite Element Program (documentation files)
Calculix-cgx-examples: Example files for Calculix GraphiX
Ceres-solver-doc: documentation for ceres-solver
Coinor-libcoinmp-dev: Simple C API for COIN-OR Solvers Clp and Cbc -- development
Evolver-nox: Surface Evolver - with no X support
Evolver-ogl: Surface Evolver - with OpenGL display
Hpcc: HPC Challenge benchmark
Libcneartree-dev: Library and headers for solving the Nearest Neighbor Problem
Libcppnumericalsolvers-dev: C++ library of numerical optimization methods for nonlinear functions
Libcubature-dev: Multi-dimensional adaptive integration (cubature) in C
Liblbfgspp-dev: C++ library that implements the Limited-memory BFGS algorithm
Libpsurface-dev: piecewise linear bijections between triangulated surfaces -- development files
Libquantum-dev: library for the simulation of a quantum computer (development files)
Libstopt-dev: library for stochastic optimization problems (development package)
Python3-agate: data analysis library optimized for human readability
Python3-agatedbf: support for dbf files in agate
Python3-agateexcel: support for Excel files in agate
Python3-agatesql: support for SQL read/write in agate
Python3-bcolz: high performant compressed data container based on NumPy (Python 3)
Python3-compyle: Execute a subset of Python on HPC platforms
Python3-cyarray: Fast, typed, resizable, Cython array
Python3-dbfread: read DBF Files with Python
Python3-lazyarray: Python module providing a NumPy-compatible lazily-evaluated array
Python3-leather: charting library for Python
Python3-libpysal: Library of spatial analysis functions
Python3-numcodecs: buffer compression and transformation codecs for Python
Python3-spyder-kernels: Jupyter kernels for the Spyder console - Python 3
Python3-spyder-line-profiler: line profiling plugin for the Spyder IDE
Python3-spyder-memory-profiler: memory profiling plugin for the Spyder IDE
Python3-spyder-reports: plugin to render scientific reports within the Spyder IDE
Python3-spyder-unittest: Plugin to run tests within the Spyder IDE
Python3-stopt: library for stochastic optimization problems (Python 3 bindings)
Python3-threadpoolctl: Python helpers for common threading libraries (BLAS, OpenMP)
Python3-zarr: chunked, compressed, N-dimensional arrays for Python
Theano-doc: CPU/GPU math expression compiler for Python (docs)

Debian packages in contrib or non-free

Libmagma-dev: Matrix Algebra on GPU and Multicore Architectures (dev)
Libsuitesparse-metis-dev: ??? missing short description for package libsuitesparse-metis-dev :-(
Matlab-support: distro integration for local MATLAB installations
Metis-edf: Family of Multilevel Partitioning Algorithms

Packaging has started and developers might try the packaging code in VCS

Libcblas-dev: Basic Linear Algebra Subroutines 3, static library
Libgismo-dev: Geometry plus simulatiom modules development files
Python3-pydap: implementation of the Data Access Protocol in Python
Xtensor-python-dev: Python bindings for the xtensor library

Physics - Debian Science Physics packages

This metapackage will install Debian Science packages related to Physics. You might also be interested in the debtag field::physics and, depending on your focus, in education-physics metapackage.

Official Debian packages with high relevance

Abinit: package for electronic structure calculations
Axiom: General purpose computer algebra system: main binary and modules
Cadabra: ??? missing short description for package cadabra :-(
Cernlib: CERNLIB data analysis suite - general use metapackage
Cp2k: Ab Initio Molecular Dynamics
Drawxtl: crystal structure viewer
Etsf-io: Binary tools to check, merge and read ETSF files
Feynmf: set of LaTeX macros for creating Feynman diagrams
Fityk: general-purpose nonlinear curve fitting and data analysis
Geant321: [Physics] Particle detector description and simulation tool
Gerris: Fluid Flow Solver
Ghkl: diffractometer computation control application
Gpaw: DFT and beyond within the projector-augmented wave method
Gpiv: ??? missing short description for package gpiv :-(
Gpivtools: ??? missing short description for package gpivtools :-(
Gwyddion: Scanning Probe Microscopy visualization and analysis tool
Libroot-math-mlp-dev: ??? missing short description for package libroot-math-mlp-dev :-(
Libroot-montecarlo-vmc-dev: ??? missing short description for package libroot-montecarlo-vmc-dev :-(
Libroot-tmva-dev: ??? missing short description for package libroot-tmva-dev :-(
Maxima: Computer algebra system -- base system
Meshlab: System for processing and editing triangular meshes
Mpqc: Massively Parallel Quantum Chemistry Program
Oce-draw: ??? missing short description for package oce-draw :-(
Openfoam: Open source toolbox for Computational Fluid Dynamics (CFD) - binaries
Openmx: package for nano-scale material simulations
Opticalraytracer: Virtual lens/mirror design workshop
Paw: Physics Analysis Workstation - a graphical analysis program
Paw++: Physics Analysis Workstation (Lesstif-enhanced version)
Psi3: Quantum Chemical Program Suite
Pyfr: flux reconstruction in Python
Pymca: Applications and toolkit for X-ray fluorescence analysis -- scripts
Python3-deap: Distributed Evolutionary Algorithms in Python3
Python3-sympy: Computer Algebra System (CAS) in Python (Python 3)
Quantum-espresso: Electronic-Structure and Ab-Initio Molecular Dynamics Suite
Root-system: ??? missing short description for package root-system :-(
Science-electronics: Debian Science Electronics transitional package
Science-numericalcomputation: Debian Science Numerical Computation packages
Siconos: modeling and simulation of nonsmooth dynamical systems (simulation runner tool)
Siconos-mechanics-tools: modeling and simulation of nonsmooth dynamical systems (mechanics tools)
Tessa: ??? missing short description for package tessa :-(
Tessa-mpi: ??? missing short description for package tessa-mpi :-(
Toulbar2: Exact combinatorial optimization for Graphical Models
V-sim: Visualize atomic structures

Official Debian packages with lower relevance

Evolver-nox: Surface Evolver - with no X support
Evolver-ogl: Surface Evolver - with OpenGL display
Feel++-apps: ??? missing short description for package feel++-apps :-(
Openctm-tools: Tools for compression of 3D triangle meshes
Paw-demos: Physics Analysis Workstation examples and tests
Science-mathematics: Debian Science Mathematics packages
Science-statistics: Debian Science Statistics packages

Packaging has started and developers might try the packaging code in VCS

Fdmnes: calculates spectra of different spectroscopies
Geant4: physics simulation toolkit

Unofficial packages built by somebody else

Octaviz: 3D visualization system for Octave

No known packages available but some record of interest (WNPP bug)

Blzpack: library for solving large sparse eigenproblems
Clhep: Class Library for High Energy Physics
Gate: Geant4 Application for Emission Tomography

No known packages available

Espresso++: Extensible Simulation Package for Research on Soft matter
Jfreemesh: 3D mesh library in Java
Spis: Software toolkit for spacecraft-plasma interactions modelling

Physics-dev - Debian Science Physics-dev packages

This metapackage will install Debian Science packages which might be helpful for development of applications for Mathematics.

You might also be interested in the science-physics metapackage.

Official Debian packages with high relevance

Fenics: Automated Solution of Differential Equations
Fftw-dev: library for computing Fast Fourier Transforms
Libasl-dev: development files for ASL
Libbasix-dev: Finite Element Basis Function Definition Runtime Library (development headers)
Libdeal.ii-dev: Differential Equations Analysis Library - development files
Libdolfinx-dev: Shared links and header files for DOLFIN
Libfclib-dev: read and write problems from the Friction Contact Library (headers)
Libfeel++-dev: ??? missing short description for package libfeel++-dev :-(
Libfftw3-dev: Library for computing Fast Fourier Transforms - development
Libnfft3-dev: development files for the NFFT library
Libopenctm-dev: Library headers for compression of 3D triangle meshes
Libp4est-dev: Algorithms for Parallel Adaptive Mesh Refinement - development files
Libplb-dev: CFD solver based on the lattice Boltzmann method. Development files
Libspfft-dev: Sparse 3D FFT library with MPI, OpenMP, CUDA / ROCm support (development files)
Libxray-absorption-perl: x-ray absorption data for the elements
Libxray-scattering-perl: x-ray scattering data for the elements
Libxray-spacegroup-perl: symmetry operations for the crystal space groups
Pyfai: Fast Azimuthal Integration scripts
Python3-basix: Finite Element Basis Function Definition Runtime Library (Python 3)
Python3-dmsh: High-quality 2D mesh generator based on distmesh
Python3-dolfin: Base Python interface for DOLFIN (Python 3)
Python3-dolfinx: Python interface for DOLFIN (Python 3)
Python3-ffcx: next-gen compiler for finite element variational forms (Python 3)
Python3-gpyfft: Wrapper for the OpenCL FFT library clFFT (Python 3)
Python3-ltfatpy: Large Time-Frequency Toolbox (LTFAT) in Python
Python3-meshplex: fast tools for simplex meshes (Python 3)
Python3-meshzoo: simple geometric meshes (Python 3)
Python3-multipletau: multiple-tau algorithm for Python3/NumPy
Python3-pyfftw: Pythonic wrapper around FFTW - Python 3
Python3-pygalmesh: Python 3 frontend to CGAL's 3D mesh generators
Python3-pynfft: Python bindings for the NFFT3 library - Python 3
Python3-pyode: Python bindings for The Open Dynamics Engine
Python3-quantities: Library for computation of physical quantities with units, based on numpy
Sfftw-dev: library for computing Fast Fourier Transforms
Trilinos-all-dev: object-oriented framework for large-scale problems - development files (ALL)

Official Debian packages with lower relevance

Libopm-common-dev: Tools for Eclipse reservoir simulation files -- development files
Libopm-grid-dev: DUNE grid implementations for reservoir simulation -- development files
Libopm-material-dev: transitional package
Libopm-models-dev: C++ simulation framework for porous media flow -- development files
Libopm-simulators-dev: Parallel porous media / reservoir simulators -- development files
Libopm-upscaling-dev: Porous media upscaling tools -- development files
Python3-opm-common: Tools for Eclipse reservoir simulation files -- Python wrappers
Python3-opm-simulators: Python wrappers for the Open porous media / reservoir simulators

Debian packages in contrib or non-free

Libtriangle-dev: High-quality 2-D mesh generator -- development files

Presentation - Debian Science generic tools for presentations

This metapackage will install Debian Science some packages which are useful for doing presentations for instance on scientific conferences.

Official Debian packages with high relevance

Dspdfviewer: Dual-Screen PDF Viewer for LaTeX-beamer
Pdf-presenter-console: multi-monitor presentation tool (ala Keynote) for PDF files
Texlive-latex-extra: ??? missing short description for package texlive-latex-extra :-(
Texlive-publishers: ??? missing short description for package texlive-publishers :-(
Zathura: document viewer with a minimalistic interface

Psychophysics - Debian Science packages for Psychophysics

This metapackage will install Debian packages which might be useful for carrying out any experiment relating physical stimuli and their psychological effects.

The selection of packages is targeting software for stimuli delivery. For additional software related to the analysis of the acquired data refer to science-neuroscience-cognitive, med-imaging depending on the domain of application. Additionally look into science-bci since those often provide a complete loop frameworks including stimuli delivery.

Official Debian packages with high relevance

Libfreenect-dev: library for accessing Kinect device -- development files
Octave-psychtoolbox-3: toolbox for vision research -- Octave bindings
Psychopy: environment for creating psychology stimuli in Python

Official Debian packages with lower relevance

Opensesame: ??? missing short description for package opensesame :-(
Science-neuroscience-cognitive: Debian Science packages for Cognitive Neuroscience

Packaging has started and developers might try the packaging code in VCS

Debruijn: De Bruijn cycle generator

Unofficial packages built by somebody else

Psytoolkit: programming and running psychological experiments

No known packages available but some record of interest (WNPP bug)

Pebl: platform for psychology experiments
Visionegg: Python library for 2D/3D visual stimulus generation

No known packages available

Nrec: neurological stimulation, data acquisition and experiment control
Psychlops
Tscope: C/C++ experiment programming library for cognitive scientists

Robotics - Debian Robotics packages

This metapackage is part of the Debian Pure Blend "Debian Science" and installs packages related to Robotics.

You might also be interested in the science-engineering metapackage.

Official Debian packages with high relevance

Aseba: Event-based framework for distributed mobile robots control
Catkin-lint: Check Robot OS catkin packages for common errors
Catkin-tools: Command line tools for catkin workspaces
Choreonoid: ??? missing short description for package choreonoid :-(
Collada-urdf-tools: ROS collada_urdf tools
Gazebo9: transitional package
Joint-state-publisher: ROS joint_state_publisher
Jskeus: Lisp based intelligent robots programming system
Liburdfdom-tools: URDF DOM - tools
Morse-simulator: ??? missing short description for package morse-simulator :-(
Mrgingham: Chessboard finder for visual calibration routines
Octomap-tools: Tools for 3D occupancy grid mapping
Octovis: Visualization tool for OctoMap
Orca: Scriptable screen reader
Pcl-ros-tools: Bridge between Robot OS library (ROS) and PCL - tools
Ros-camera-calibration: ROS camera_calibration nodes
Ros-desktop: Robot OS desktop metapackage
Ros-desktop-full: Robot OS desktop-full metapackage
Ros-opencv-apps: opencv_apps Robot OS package - apps
Ros-perception: Python Robot OS perception metapackage
Ros-robot: Python Robot OS robot metapackage
Ros-robot-state-publisher: Robot OS robot_state_publisher
Ros-simulators: Python Robot OS simulators metapackage
Rosdiagnostic: command line tool to print aggregated diagnostic (Robot OS)
Xenomai-runtime: ??? missing short description for package xenomai-runtime :-(

Official Debian packages with lower relevance

Arduino-ctags: Arduino fork of exuberant ctags
Arduino-mk: Program your Arduino from the command line
Gnuplot: Command-line driven interactive plotting program.
Joint-state-publisher-gui: ROS joint_state_publisher_gui
Libcoin-runtime: high-level 3D graphics kit - external data files
Octave: GNU Octave language for numerical computations
Ompl-demos: Open Motion Planning Library (OMPL) demos
Vtk9: Binaries for VTK9

Packaging has started and developers might try the packaging code in VCS

Robot-player: Networked server for robots and sensors

Unofficial packages built by somebody else

Orocos-ocl: Orocos Component Library
Orocos-rtt: Orocos Real-Time Toolkit

No known packages available but some record of interest (WNPP bug)

Openhrp: OpenHRP robotics simulator
Openrtm: OpenRTM robotics middleware
Solid: Software library for collision detection of geometric objects in 3D space.

No known packages available

D-collide: D-Collide is a real-time collision detection library aimed
Openrave: OpenRAVE robotics platform
Roboop: synthesis, and simulation of robotic manipulator models
Rtnet: hard real-time network protocol stack

Robotics-dev - Debian Robotics development packages

This metapackage is part of the Debian Pure Blend "Debian Science" and installs packages that are relevant to develop applications for robotics.

Official Debian packages with high relevance

Ignition-tools: Entry point for using all the suite of ignition tools - app
Jskeus-dev: Development files of Lisp based intelligent robots programming system
Libapriltag-dev: AprilTags Visual Fiducial System
Libccd-dev: Library for collision detection between convex shapes - dev files
Libcnoid-dev: ??? missing short description for package libcnoid-dev :-(
Libcomedi-dev: Development library for Comedi
Libconsole-bridge-dev: console bridge - development files
Libcv-dev: ??? missing short description for package libcv-dev :-(
Libdart-dev: Kinematics Dynamics and Optimization Library - development files
Libfcl-dev: Flexible Collision Library - development files
Libgazebo-dev: Open Source Robotics Simulator - Development Files
Libignition-cmake-dev: Ignition Robotics CMake Library - Development files
Libignition-common-dev: Collection of useful code used by robotics apps - Metapackage
Libignition-fuel-tools-dev: Ignition fuel-tools classes and functions - Development files
Libignition-math-dev: Ignition Robotics Math Library - Development files
Libignition-msgs-dev: Set of message definitions used by robotics apps - Dev files
Libignition-plugin-dev: Ignition Robotics Plugin Library - Development files
Libignition-transport-dev: Ignition Robotics transport Library - Development files
Libignition-utils-dev: Ignition Utils Library - Development files
Libkdl-parser-dev: Development files for ROS kdl_parser library
Liboctomap-dev: Octomap library development files
Libode-dev: Open Dynamics Engine - development files
Libompl-dev: Open Motion Planning Library (OMPL) development files
Libopenigtlink-dev: Open IGT Link is a simple network protocol - development
Liborocos-bfl-dev: Orocos Bayesian Filtering Library development files
Liborocos-kdl-dev: Kinematics and Dynamics Library development files
Libpcl-dev: Point Cloud Library - development files
Libpcl-ros-dev: Bridge between Robot OS library (ROS) and PCL - development headers
Libroboptim-core-dev: ??? missing short description for package libroboptim-core-dev :-(
Librobottestingframework-dev: Robot Testing Framework - development files
Librosconsole-dev: Development files for librosconsole
Libsdformat-dev: Simulation Description Format (SDF) parser - Development files
Libsimbody-dev: SimTK multibody dynamics API - development files
Libslicot-dev: numerical algorithms from systems and control theory (static library)
Liburdf-dev: Development files for ROS urdf library
Liburdfdom-dev: URDF DOM - development files
Liburdfdom-headers-dev: URDF DOM - header files
Libvisp-dev: development files for ViSP
Python3-catkin-lint: Check Robot OS catkin packages for common errors (transitional package)
Python3-comedilib: Python3 wrapper for Comedilib
Python3-dmsh: High-quality 2D mesh generator based on distmesh
Python3-meshplex: fast tools for simplex meshes (Python 3)
Python3-meshzoo: simple geometric meshes (Python 3)
Python3-osrf-pycommon: Commonly needed Python modules for software developers
Python3-tf2: Robot OS tf2 transform library - Python 3
Ros-desktop-dev: Robot OS desktop development metapackage
Ros-desktop-full-dev: Robot OS desktop-full development metapackage
Ros-desktop-full-lisp-dev: LISP Robot OS desktop-full development metapackage
Ros-desktop-full-python-dev: Python Robot OS desktop-full development metapackage
Ros-environment: Robot OS environment hooks
Ros-perception-dev: Robot OS perception development metapackage
Ros-simulators-dev: Robot OS simulators development metapackage
Vcstool: Command line tool to make working with multiple repositories easier

Official Debian packages with lower relevance

Libmrgingham-dev: Chessboard finder for visual calibration routines
Python3-mrgingham: Chessboard finder for visual calibration routines
Visp-images-data: visual servoing library - dataset reference files

Debian packages in contrib or non-free

Libelas-dev: Library for Efficient Large-scale Stereo Matching

Packaging has started and developers might try the packaging code in VCS

Libignition-common3-core-dev: Collection of useful code used by robotics apps - Core dev files

Simulations - Debian Science Simulation packages

This metapackage will install Debian Science packages that are used to do simulations in different fields of science.

Official Debian packages with high relevance

Calculix-ccx: Three-Dimensional Structural Finite Element Program
Calculix-cgx: Calculix cgx is a 3-dimensional pre- and post-processor for fem
Esys-particle: Software for particle-based numerical modelling (MPI version)
Gazebo: Open Source Robotics Simulator - Binaries
Getdp: general environment for the treatment of discrete problems
Lammps: Molecular Dynamics Simulator
Libceres-dev: nonlinear least squares minimizer (development files)
Libdart-dev: Kinematics Dynamics and Optimization Library - development files
Libkim-api-v2-models: Models and model-drivers for KIM-API
Libopm-common-bin: Tools for Eclipse reservoir simulation files -- utility programs
Libopm-grid-bin: corner point grid utility programs
Libopm-simulators-bin: Parallel porous media / reservoir simulators -- applications
Libopm-upscaling-bin: Porous media upscaling tools -- applications
Liggghts: Open Source DEM Particle Simulation Software.
Mbpoll: command line utility to communicate with ModBus slave (RTU or TCP)
Music-bin: Multi-Simulation Coordinator for MPI -- Utilities
Neuron: Simulation environment for computational models of neurons
Occt-draw: Open CASCADE Technology command interpreter and graphical test system
Occt-misc: OCCT CAE platform shared library miscellaneous files
Openfoam: Open source toolbox for Computational Fluid Dynamics (CFD) - binaries
Pysph-viewer: Open-source framework for Smoothed Particle Hydrodynamics (viewer)
Python3-deap: Distributed Evolutionary Algorithms in Python3
Python3-escript: Escript/Finley finite elements Python3 system (with OpenMP)
Python3-escript-mpi: (OpenMP + MPI)
Python3-pysph: Open-source framework for Smoothed Particle Hydrodynamics
Python3-qutip: python package for simulating the dynamics of open quantum systems
Python3-sfepy: Simple Finite Elements in Python
Python3-woo: ??? missing short description for package python3-woo :-(
Siconos: modeling and simulation of nonsmooth dynamical systems (simulation runner tool)
Siconos-mechanics-tools: modeling and simulation of nonsmooth dynamical systems (mechanics tools)
Sumo: Simulation of Urban MObility (SUMO)
Tkgate: Tcl/Tk based digital circuit editor and simulator
Yade: Platform for discrete element modeling

Official Debian packages with lower relevance

Calculix-ccx-doc: Three-Dimensional Structural Finite Element Program (documentation files)
Calculix-ccx-test: Three-Dimensional Structural Finite Element Program (documentation files)
Calculix-cgx-examples: Example files for Calculix GraphiX
Ceres-solver-doc: documentation for ceres-solver
Libopensurgsim-dev: Free platform for surgical simulation - development
Libopm-common-dev: Tools for Eclipse reservoir simulation files -- development files
Libopm-grid-dev: DUNE grid implementations for reservoir simulation -- development files
Libopm-material-dev: transitional package
Libopm-models-dev: C++ simulation framework for porous media flow -- development files
Libopm-simulators-dev: Parallel porous media / reservoir simulators -- development files
Libopm-upscaling-dev: Porous media upscaling tools -- development files
Python3-opm-common: Tools for Eclipse reservoir simulation files -- Python wrappers
Python3-opm-simulators: Python wrappers for the Open porous media / reservoir simulators
Python3-pyswarms: research toolkit for particle swarm optimization in Python

Packaging has started and developers might try the packaging code in VCS

Fdmnes: calculates spectra of different spectroscopies
Libgismo-dev: Geometry plus simulatiom modules development files

Social - Debian Science social sciences packages

This metapackage will install Debian Science packages useful for social sciences.

Official Debian packages with high relevance

Opensesame: ??? missing short description for package opensesame :-(

Statistics - Debian Science Statistics packages

This metapackage is part of the Debian Pure Blend "Debian Science" and installs packages related to statistics. This task is a general task which might be useful for any scientific work. It depends from a lot of R packages as well as from other tools which are useful to do statistics. Moreover the Science Mathematics task is suggested to optionally install all mathematics related software.

Official Debian packages with high relevance

Apophenia-bin: Apophenia Statistical C Library -- binary package
Datamash: statistics tool for command-line interface
Elpa-ess: Emacs mode for statistical programming and data analysis
Libdistlib-java: Java library of statistical distribution functions
Littler: GNU R scripting and command-line front-end -- transition package
Persalys: GUI for uncertainty treatment and variabilities management
Psignifit: Fitting and testing hypotheses about psychometric functions
Pspp: Statistical analysis tool
Python3-bayespy: variational Bayesian inference tools for Python
Python3-hmmlearn: ??? missing short description for package python3-hmmlearn :-(
Python3-openturns: Python3 front-end of OpenTURNS (aka TUI)
Python3-pandas: data structures for "relational" or "labeled" data
Python3-persalys: GUI for uncertainty treatment (Python bindings)
Python3-scipy: scientific tools for Python 3
Python3-statsmodels: Python3 module for the estimation of statistical models
R-cran-abind: GNU R abind multi-dimensional array combination function
R-cran-acepack: GNU R package for regression transformations
R-cran-afex: GNU R package for analyzing factorial experiments using ANOVA or mixed models
R-cran-amore: GNU R: A MORE flexible neural network package
R-cran-arm: Data Analysis Using Regression and Multilevel/Hierarchical Models
R-cran-bayesfactor: GNU R Bayes factors for t-tests, ANOVAs and contingency tables
R-cran-bayesm: GNU R package for Bayesian inference
R-cran-bms: GNU R package for Bayesian model averaging for linear models
R-cran-boot: GNU R package for bootstrapping functions from Davison and Hinkley
R-cran-bradleyterry2: GNU R package for using Bradley-Terry models
R-cran-ca: GNU R package for simple, multiple and joint correspondence analysis
R-cran-cairodevice: GNU R Cairo/Gtk2 device driver package
R-cran-car: GNU R Companion to Applied Regression by John Fox
R-cran-caret: GNU R package for classification and regression training
R-cran-chron: GNU R package for chronologically ordered objects
R-cran-cluster: GNU R package for cluster analysis by Rousseeuw et al
R-cran-coda: Output analysis and diagnostics for MCMC simulations in R
R-cran-codetools: GNU R package providing code analysis tools
R-cran-coin: GNU R package providing conditional inference procedures
R-cran-contfrac: GNU R package providing various utilities for evaluating continued fractions
R-cran-conting: ??? missing short description for package r-cran-conting :-(
R-cran-corpcor: GNU R for Estimation of Covariance and Correlation -- corpcor
R-cran-date: GNU R package for date handling
R-cran-dbi: GNU R package providing a generic database interface
R-cran-deldir: GNU R Delaunay Triangulation and Dirichlet (Voronoi) Tessellation
R-cran-desolve: GNU R package providing functions that solve initial value problems
R-cran-ecodist: GNU R package for dissimilarity-based ecological analysis
R-cran-effects: GNU R graphical and tabular effects display for glm models
R-cran-elliptic: GNU R package providing elliptic and related functions
R-cran-energy: GNU R package for energy statistics for distribution comparison
R-cran-erm: GNU R package for 'extended Rasch modelling'
R-cran-estimability: GNU R package providing tools for determining estimability of linear functions
R-cran-expm: GNU R Computation of the matrix exponential and related quantities
R-cran-fastcluster: Fast hierarchical clustering routines for GNU R
R-cran-fbasics: GNU R package for financial engineering -- fBasics
R-cran-fcopulae: GNU R package for financial engineering -- fCopulae
R-cran-fextremes: GNU R package for financial engineering -- fExtremes
R-cran-fmultivar: GNU R package for financial engineering -- fMultivar
R-cran-foptions: GNU R package for financial engineering -- fOptions
R-cran-foreign: GNU R package to read/write data from other stat. systems
R-cran-fportfolio: GNU R package for financial engineering -- fPortfolio
R-cran-gam: Generalized Additive Models for R
R-cran-gdata: GNU R package with data manipulation tools by Greg Warnes et al
R-cran-geepack: Generalized Estimating Equation Package for R
R-cran-ggplot2: implementation of the Grammar of Graphics
R-cran-glmnet: Lasso and Elastic-Net Regularized Generalized Linear Models
R-cran-gmodels: GNU R package with tools for model fitting by Greg Warnes et al
R-cran-goftest: GNU R Classical Goodness-of-Fit Tests for Univariate Distributions
R-cran-gplots: GNU R package with tools for plotting data by Greg Warnes et al
R-cran-gregmisc: GNU R package with miscellaneous functions by Greg Warnes et al
R-cran-gtools: GNU R package with R programming tools by Greg Warnes et al
R-cran-hdf5: GNU R package interfacing the NCSA HDF5 library
R-cran-hmisc: GNU R miscellaneous functions by Frank Harrell
R-cran-hypergeo: GNU R package providing the Gaussian hypergeometric for complex numbers
R-cran-its: GNU R package for handling irregular time series
R-cran-kernsmooth: GNU R package for kernel smoothing and density estimation
R-cran-lattice: GNU R package for 'Trellis' graphics
R-cran-latticeextra: GNU R package of additional graphical displays based on lattice
R-cran-lavaan: GNU R package for latent variable analysis -- lavaan
R-cran-lhs: GNU R Latin Hypercube Samples
R-cran-lme4: GNU R package for linear mixed effects model fitting
R-cran-lmtest: GNU R package for diagnostic checking in linear models
R-cran-logspline: GNU R package providing routines for the logspline density estimation
R-cran-lsmeans: GNU R package providing least-squares means for various classes of models
R-cran-mapdata: GNU R support for producing geographic maps (supplemental data)
R-cran-mapproj: GNU R support for cartographic projections of map data
R-cran-maps: GNU R support for producing geographic maps
R-cran-maptree: GNU R mapping, pruning, and graphing tree models
R-cran-mass: GNU R package of Venables and Ripley's MASS
R-cran-matchit: GNU R package of nonparametric matching methods
R-cran-matrix: GNU R package of classes for dense and sparse matrices
R-cran-mcmcpack: R routines for Markov chain Monte Carlo model estimation
R-cran-mgcv: GNU R package for multiple parameter smoothing estimation
R-cran-misc3d: GNU R collection of 3d plot functions and rgl-based isosurfaces
R-cran-mnp: GNU R package for fitting multinomial probit (MNP) models
R-cran-modelmetrics: GNU R Rapid Calculation of Model Metrics
R-cran-modeltools: GNU R package providing a collection of tools to deal with statistical models
R-cran-msm: GNU R Multi-state Markov and hidden Markov models in continuous time
R-cran-multcomp: GNU R package for multiple comparison procedures
R-cran-mvnormtest: GNU R package for multivariate normality test
R-cran-mvtnorm: GNU R package to compute multivariate Normal and T distributions
R-cran-nlme: GNU R package for (non-)linear mixed effects models
R-cran-nmf: GNU R framework to perform non-negative matrix factorization
R-cran-pbapply: GNU R package providing progress bars for vectorized R functions
R-cran-pbivnorm: GNU R package for calculating probabilities from a bivariate normal CDF
R-cran-permute: R functions for generating restricted permutations of data
R-cran-pscl: GNU R package for discrete data models
R-cran-psy: GNU R procedures for psychometrics
R-cran-qtl: GNU R package for genetic marker linkage analysis
R-cran-quadprog: GNU R package for solving quadratic programming problems
R-cran-qvcalc: GNU R quasi variances for factor effects in statistical models
R-cran-randomfieldsutils: ??? missing short description for package r-cran-randomfieldsutils :-(
R-cran-raschsampler: GNU R package for sampling binary matrices with fixed margins
R-cran-rcmdr: GNU R platform-independent basic-statistics GUI
R-cran-relimp: GNU R package for inference on relative importance of regressors
R-cran-reshape2: Flexibly reshape data: a reboot of the reshape package
R-cran-rggobi: GNU R package for the GGobi data visualization system
R-cran-rgl: GNU R package for three-dimensional visualisation using OpenGL
R-cran-rgtk2: GNU R binding for Gtk2
R-cran-rinside: GNU R package to embed R in C++ application
R-cran-rmpi: GNU R package interfacing MPI libraries for distributed computing
R-cran-rms: GNU R regression modeling strategies by Frank Harrell
R-cran-rmysql: GNU R package providing a DBI-compliant interface to MySQL
R-cran-rodbc: GNU R package for ODBC database access
R-cran-rpart: GNU R package for recursive partitioning and regression trees
R-cran-rquantlib: GNU R package interfacing the QuantLib finance library
R-cran-rsdmx: GNU R package for the Statistical Data and Metadata Exchange (SDMX) framework
R-cran-rserve: GNU R Rserve tcp/ip server and sample clients
R-cran-rsprng: GNU R interface to SPRNG (Scalable Parallel RNGs)
R-cran-sandwich: GNU R package for model-robust standard error estimates
R-cran-sem: GNU R functions for fitting structural equation models -- sem
R-cran-sm: GNU R package for kernel smoothing methods
R-cran-snow: GNU R package for 'simple network of workstations'
R-cran-spam: GNU R functions for sparse matrix algebra
R-cran-spatstat: GNU R Spatial Point Pattern analysis, model-fitting, simulation, tests
R-cran-statmod: GNU R package providing algorithms and functions for statistical modeling
R-cran-strucchange: GNU R package for structural change regression estimation
R-cran-survival: GNU R package for survival analysis
R-cran-teachingdemos: GNU R Demonstrations for teaching and learning
R-cran-timedate: GNU R package for financial engineering -- timeDate
R-cran-tkrplot: GNU R embedded Tk plotting device package
R-cran-tseries: GNU R package for time-series analysis and comp. finance
R-cran-vcd: GNU R Visualizing Categorical Data
R-cran-vcdextra: GNU R package providing extensions and additions to the vcd package
R-cran-vgam: GNU R package for estimating vector generalized additive models
R-cran-xml: GNU R package for XML parsing and generation
R-cran-zelig: GNU R package providing a unified front-end for estimating statistical models
R-cran-zoo: GNU R package for totally ordered indexed observations
R-recommended: GNU R collection of recommended packages [metapackage]
Rkward: KDE frontend to the R statistics language

Official Debian packages with lower relevance

Libapophenia2-dev: Apophenia Statistical C Library -- development package
Libicb-utils-java: Java library of utilities to manage files and compute statistics
Libtamuanova-dev: Development files for the TAMU ANOVA library
Node-shiny-server-client: browser library for connecting to Shiny Server
Python3-leidenalg: Python3 implementation of the Leiden algorithm in C++
Python3-pynndescent: nearest neighbor descent for approximate nearest neighbors
R-cran-bbmle: GNU R tools for general maximum likelihood estimation
R-cran-blockmodeling: Generalized and classical blockmodeling of valued networks
R-cran-brglm: GNU R package for bias reduction in binomial-response GLMs
R-cran-catools: GNU R package providing various utility functions
R-cran-ellipse: GNU R functions for drawing ellipses and ellipse-like confidence regions
R-cran-fastmatch: GNU R package for fast match replacement for repeated look-ups
R-cran-futile.logger: logging utility for GNU R
R-cran-futile.options: GNU R futile options management
R-cran-gnm: GNU R package for generalized nonlinear models
R-cran-igraph: GNU R network analysis and visualization
R-cran-irlba: GNU R fast truncated SVD, PCA and symmetric eigendecomposition
R-cran-lambda.r: GNU R modeling data with functional programming
R-cran-luminescence: GNU R comprehensive luminescence dating data analysis
R-cran-magrittr: GNU R forward-pipe operator
R-cran-minpack.lm: GNU R Levenberg-Marquardt nonlinear least-squares algorithm found in MINPACK
R-cran-mlmrev: GNU R Examples from Multilevel Modelling Software Review
R-cran-nnls: GNU R package for non-negative least squares (the Lawson-Hanson algorithm)
R-cran-princurve: fit a principal curve in arbitrary dimension
R-cran-r.oo: GNU R object-oriented programming with or without references
R-cran-r.utils: GNU R various programming utilities
R-cran-rngtools: GNU R package for random number generators
R-cran-spc: GNU R Statistical Process Control
Science-mathematics: Debian Science Mathematics packages

Packaging has started and developers might try the packaging code in VCS

Rstudio: GNU R IDE

Unofficial packages built by somebody else

R-cran-fcalendar: GNU R package for financial engineering -- fCalendar

Tools - Debian Science generic tools for scientific work

This task lists Debian Science some packages which are providing some generic tools for sciences and to enhance scientific work.

Note that there is no according metapackage created since the packages might be to different to make sense to install all on one machine.

Official Debian packages with high relevance

Hdf-compass: viewer for HDF5 and related formats
Mrcal: Calibration and SFM library
Openstereogram: Stereogram ("Magic Eye") generator with GUI
Python3-h5netcdf: netCDF4 support via h5py for Python 3
Python3-h5py: general-purpose Python interface to hdf5
Python3-hdf5plugin: Python library to make HDF5 compression filters usable from h5py
Python3-hdf5storage: high-level utilities to read from and write to HDF5 (Python 3)
Python3-pybind11: pybind11 helper module for Python 3
Reprounzip: tool for reproducing scientific experiments (unpacker)
Reprozip: tool for reproducing scientific experiments (packer)
Science-workflow: workflow management systems useful for scientific research
Xoscope: digital oscilloscope

Official Debian packages with lower relevance

Libmemtailor-dev: C++ library of special purpose memory allocators (developer tools)
Libmrcal-dev: Calibration and SFM library
Libmrmpi-dev: Implements MapReduce operation on top of standard MPI message - development
Python3-mrcal: Calibration and SFM library
Python3-opcodes: Database of Processor Instructions/Opcodes (Python 3)
Python3-pweave: scientific report generator for Python
Spacenavd: daemon for using 3D input devices from 3Dconnexion
Tiemu-skinedit: skin editor for TiEmu

Packaging has started and developers might try the packaging code in VCS

Python3-pydap: implementation of the Data Access Protocol in Python

Typesetting - Debian Science typesetting packages

This metapackage will install Debian Science packages related to typesetting. You might also be interested in the use::typesetting debtag.

Official Debian packages with high relevance

Auctex: integrated document editing environment for TeX etc.
Biber: Much-augmented BibTeX replacement for BibLaTeX users
Bibus: bibliographic database
Bibutils: interconvert various bibliographic data formats
Cb2bib: extract bibliographic references from various sources
Dia: Diagram editor
Diploma: Write scientific papers with Debian
Feynmf: set of LaTeX macros for creating Feynman diagrams
Gummi: simple LaTeX editor with live preview
Impose+: Postscript utilities for two-up printing, bbox, etc
Ipe: drawing editor for creating figures in PDF or PS formats
Ipe5toxml: converts Ipe5 figures to an XML file readable by Ipe
Jabref: graphical frontend to manage BibTeX and BibLaTeX databases
Jeuclid-mathviewer: Complete MathML rendering solution (Swing MathViewer)
Kbibtex: BibTeX editor for KDE
Kile: KDE Integrated LaTeX Environment
Latexdiff: utility to mark up significant differences between LaTeX files
Libjlatexmath-java: Implementation of LaTeX math mode wrote in Java
Lyx: document processor
Mlpost: OCaml interface to Metapost (command-line tool)
Pandoc: general markup converter
Pandoc-citeproc: Pandoc support for Citation Style Language - tools
Pybliographer: ??? missing short description for package pybliographer :-(
Pybtex: BibTeX-compatible bibliography processor
Python3-pybtex-docutils: docutils backend for pybtex
Python3-sphinxcontrib.bibtex: Sphinx extension for BibTeX style citations
R-cran-knitr: GNU R package for dynamic report generation using Literate Programming
Referencer: ??? missing short description for package referencer :-(
Sagetex: Embed Sage code and plots into LaTeX
Setzer: simple yet full-featured LaTeX editor
Sketch: 3D diagrams for TeX from scene description language
Texlive: TeX Live: A decent selection of the TeX Live packages
Texlive-bibtex-extra: ??? missing short description for package texlive-bibtex-extra :-(
Texlive-math-extra: ??? missing short description for package texlive-math-extra :-(
Texlive-publishers: ??? missing short description for package texlive-publishers :-(
Texlive-science: ??? missing short description for package texlive-science :-(
Texmacs: ??? missing short description for package texmacs :-(
Texmaker: cross-platform LaTeX editor
Texstudio: fully featured LaTeX editor
Transfig: ??? missing short description for package transfig :-(
Vim-latexsuite: view, edit and compile LaTeX documents from within Vim
Xfig: Facility for Interactive Generation of figures under X11
Zotero-standalone: ??? missing short description for package zotero-standalone :-(

Official Debian packages with lower relevance

Csv2latex: command-line CSV to LaTeX file converter
Libgtkmathview-bin: rendering engine for MathML documents
Libqtexengine-dev: Development files for the QTeXEngine library
Libreoffice-dmaths: Formula editing plug-in for LibreOffice Writer
Luasseq: TeX Live: transitional dummy package
R-cran-gridbase: GNU R Integration of base and grid graphics
R-cran-highr: Syntax Highlighting for R Source Code
R-cran-scatterd3: D3 JavaScript scatterplot from GNU R
R-cran-shape: GNU R functions for plotting graphical shapes, colors
R-cran-xtable: GNU R coerce data to LaTeX and HTML tables
Svgtoipe: converts SVG figures to an XML file readable by Ipe
Tellico: Collection manager for books, videos, music, etc
Xul-ext-zotero: ??? missing short description for package xul-ext-zotero :-(

Unofficial packages built by somebody else

Pymarc: read, write and modify MARC bibliographic data

No known packages available but some record of interest (WNPP bug)

Quaneko: An index tool of TXT, PDF, DOC, HTML and others

No known packages available

Gpapers: bibliography management software

Viewing - Debian Science data visualisation packages

This metapackage will install Debian Science packages related to data visualization. You might also be interested in the use::viewing debtag.

Official Debian packages with high relevance

3depict: visualisation and analysis for single valued point data
Camv-rnd: Standard installation of camv-rnd
Ctioga2: polymorphic plotting program
Feedgnuplot: Pipe-oriented frontend to Gnuplot
Fityk: general-purpose nonlinear curve fitting and data analysis
G3data: ??? missing short description for package g3data :-(
Geg: GTK+ Equation Grapher
Gfsview: ??? missing short description for package gfsview :-(
Giza-dev: Lightweight scientific plotting library (development files)
Gle-graphics: Graphics Layout Engine
Gmsh: Three-dimensional finite element mesh generator
Gnudatalanguage: Free IDL compatible incremental compiler
Gnuplot: Command-line driven interactive plotting program.
Grace: XY graphing and plotting tool
Graphviz: rich set of graph drawing tools
Gri: a language for scientific illustration
Gwyddion: Scanning Probe Microscopy visualization and analysis tool
Ifrit: powerful tool for visualizing 3-dimensional data sets
Imview: Image viewing and analysis application
Kst: scientific data plotting tool
Labplot: interactive graphing and analysis of scientific data
Libgnuplot-iostream-dev: C++ programming interface for gnuplot. Headers
Libqglviewer2: ??? missing short description for package libqglviewer2 :-(
Lybniz: mathematical function graph plotter
Mathgl: library for scientific graphs (utilities and examples)
Matlab2tikz: converter of Octave plots to TikZ figures (for integration into LaTeX)
Mayavi2: scientific visualization package for 2-D and 3-D data
Open3d-gui: Transitional dummy package for open3d-viewer
Open3d-tools: Library for 3D data processing - tools
Ovito: ??? missing short description for package ovito :-(
Paraview: Parallel Visualization Application
Pdl: perl data language: Perl extensions for numerics
Plotdrop: minimal GNOME frontend to GNUPlot
Python3-gnuplot: Python interface to the gnuplot plotting program
Python3-guiqwt: efficient 2D data-plotting library - Python 3
Python3-pyqtgraph: Scientific Graphics and GUI Library for Python 3
Python3-seaborn: statistical visualization library for Python3
Pyxplot: data plotting program producing publication-quality output
Qtiplot: data analysis and scientific plotting
Quickplot: fast interactive 2D plotter and data viewer
R-cran-sjplot: GNU R data visualization for statistics in social science
Rlplot: GUI application for generating publication quality graphs
Scidavis: ??? missing short description for package scidavis :-(
Solvespace: Parametric 2d/3d CAD
Trend: general-purpose, efficient trend graph
Tulip: System dedicated to the visualization of huge data sets as graphs
Udav: library for scientific graphs (window interface)
Veusz: 2D and 3D scientific plotting application with graphical interface
Vistrails: ??? missing short description for package vistrails :-(
Yorick: interpreted language and scientific graphics

Official Debian packages with lower relevance

Circos: plotter for visualizing data
Circos-tools: plotter for visualizing data - helper utilities
Findimagedupes: Finds visually similar or duplicate images
Jeuclid-mathviewer: Complete MathML rendering solution (Swing MathViewer)
Libcoin-dev: high-level 3D graphics devkit with Open Inventor and VRML97 support
Libgrits-dev: Development files for grits
Libgtkmathview-bin: rendering engine for MathML documents
Libgts-bin: utility binaries for libgts
Libpuzzle-bin: quick similar image finder - runtime tool
Libqglviewer-dev: ??? missing short description for package libqglviewer-dev :-(
Libsoqt520-dev: Qt5 GUI component toolkit for Inventor - development
Libvtk9-dev: VTK header files
Libvtk9-java: VTK - Java language support
Libvtk9-qt-dev: VTK header files, containing Qt files
Med-imaging: Debian Med image processing and visualization packages
Python3-matplotlib: Python based plotting system in a style similar to Matlab
Python3-pivy: Coin binding for Python 3
Python3-vtk9: Python bindings for VTK
R-cran-aplpack: Another Plot PACKage: stem.leaf, bagplot, faces, spin3R and others
R-cran-colorspace: GNU R Color Space Manipulation
R-cran-ggplot2: implementation of the Grammar of Graphics
R-cran-labeling: GNU R Axis Labeling optimization
R-cran-plotrix: GNU R package providing various plotting functions
R-cran-qqman: R package for visualizing GWAS results using Q-Q and manhattan plots
R-cran-scales: Scale functions for visualization
R-cran-scatterplot3d: GNU R package for Visualizing Multivariate Data
R-cran-shape: GNU R functions for plotting graphical shapes, colors
R-cran-vioplot: GNU R toolbox for violin plots
Texlive-pictures: ??? missing short description for package texlive-pictures :-(
Vtk9-examples: VTK examples

Debian packages in contrib or non-free

Pgplot5: large subroutine library for plotting scientific data

Packaging has started and developers might try the packaging code in VCS

Cassandra: highly-scalable partitioned row store
Visit: interactive parallel visualization and graphical analysis tool

No known packages available but some record of interest (WNPP bug)

Pgfplots: TeX package to draw normal and/or logarithmic plots directly in TeX

Viewing-dev - Debian Science development of visualisation applications

This metapackage will install Debian Science packages related to the development of applications to visualise scientific data.

Official Debian packages with high relevance

Gnudatalanguage: Free IDL compatible incremental compiler
Inventor-dev: Open Inventor development files
Libchealpix-dev: HEALPix representation of spherical data - C development library
Libcoin-dev: high-level 3D graphics devkit with Open Inventor and VRML97 support
Libforge-dev: development files for forge
Libgl2ps-dev: Lib providing high quality vector output for OpenGL application, dev files
Libglbinding-dev: development files for glbinding
Libgli-dev: ??? missing short description for package libgli-dev :-(
Libglm-dev: C++ library for OpenGL GLSL type-based mathematics
Libglobjects-dev: development files for globjects
Libgnuplot-iostream-dev: C++ programming interface for gnuplot. Headers
Libgrits-dev: Development files for grits
Libgtkdatabox-dev: Gtk+ library to display large amounts of numerical data (development)
Libgtkdataboxmm-dev: ??? missing short description for package libgtkdataboxmm-dev :-(
Libgts-dev: development files for libgts
Libopen3d-dev: Library for 3D data processing - development headers
Liborigin2-dev: library for reading OriginLab Origin 7.5 project files (development)
Libplplot-dev: Scientific plotting library (development files)
Libqglviewer-dev: ??? missing short description for package libqglviewer-dev :-(
Libqglviewer-dev-qt5: OpenGL 3D viewer library based on Qt5 - development files
Libqtexengine-dev: Development files for the QTeXEngine library
Libqwtplot3d-qt5-dev: 3D plotting library based on Qt5/OpenGL (development)
Libslvs1-dev: SolveSpace geometric kernel (development files)
Libsoqt520-dev: Qt5 GUI component toolkit for Inventor - development
Libtulip-dev: Tulip graph library - core development files
Libvtk9-dev: VTK header files
Libvtk9-java: VTK - Java language support
Libvtk9-qt-dev: VTK header files, containing Qt files
Pdl: perl data language: Perl extensions for numerics
Python3-gnuplot: Python interface to the gnuplot plotting program
Python3-gnuplotlib: Gnuplot-based plotter for numpy
Python3-matplotlib: Python based plotting system in a style similar to Matlab
Python3-matplotlib-venn: Python 3 plotting area-proportional two- and three-way Venn diagrams
Python3-open3d: Library for 3D data processing - Python 3 bindings
Python3-pivy: Coin binding for Python 3
Python3-plplot-qt: Scientific plotting library (Python Qt GUI)
Python3-qwt: Pure Python implementation of Qwt - Python 3
Python3-qwt3d-qt5: Python bindings of the QwtPlot3D library
Python3-skimage: Python 3 modules for image processing
Python3-skimage-lib: Optimized low-level algorithms for Python 3 scikit-image
Python3-symfit: Symbolic Fitting in Python, fitting as it should be
Python3-vedo: Python module for 3D scientific visualization with VTK
Python3-vispy: interactive visualization in Python 3
Python3-vtk9: Python bindings for VTK
Vtk9-examples: VTK examples

Official Debian packages with lower relevance

Libcollada-dom2.4-dp-dev: Transitional package
Python3-opentsne: t-Distributed Stochastic Neighbor Embedding algorithm

Packaging has started and developers might try the packaging code in VCS

Python3-gneiss: data analysis and visualisation toolbox for high dimensional proportions
Python3-holoviews: annotate your data and let Python3 visualize
Python3-hvplot: familiar and high-level Python3 API for data exploration and visualization

Workflow - workflow management systems useful for scientific research

This task lists some packages providing workflow management systems useful for scientific research.

Official Debian packages with high relevance

Capsule-nextflow: packaging and deployment tool for Java applications
Coop-computing-tools: cooperative computing tools
Cwltool: Common Workflow Language reference implementation
Gearman: Distributed job queue
Gearman-tools: Tools for the Gearman distributed job queue
Make: utility for directing compilation
Pegasus-wms: Scientific workflow management system for HTCondor
Python3-nipype: Neuroimaging data analysis pipelines in Python3
Python3-wdlparse: Workflow Description Language (WDL) parser for Python
Snakemake: pythonic workflow management system
Toil: cross-platform workflow engine

Official Debian packages with lower relevance

Cwlformat: code formatter for Common Workflow Language
Libbenchmark-tools: Microbenchmark support library, tools and documentation

Tasks page

Table of contents

Packaging has started and developers might try the packaging code in VCS

No known packages available but some record of interest (WNPP bug)

No known packages available

Official Debian packages with high relevance

Official Debian packages with lower relevance

Packaging has started and developers might try the packaging code in VCS

Official Debian packages with high relevance

Official Debian packages with lower relevance

Packaging has started and developers might try the packaging code in VCS

No known packages available but some record of interest (WNPP bug)

No known packages available

Official Debian packages with high relevance

Official Debian packages with lower relevance

Packaging has started and developers might try the packaging code in VCS

Unofficial packages built by somebody else

No known packages available but some record of interest (WNPP bug)

No known packages available

Official Debian packages with high relevance

Official Debian packages with lower relevance

Official Debian packages with high relevance

Official Debian packages with lower relevance

Official Debian packages with high relevance

Official Debian packages with lower relevance

Official Debian packages with high relevance

Official Debian packages with lower relevance

No known packages available

Official Debian packages with high relevance

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Debian packages in contrib or non-free

No known packages available

Official Debian packages with high relevance

Official Debian packages with lower relevance

Packaging has started and developers might try the packaging code in VCS

Unofficial packages built by somebody else

No known packages available but some record of interest (WNPP bug)

No known packages available

Official Debian packages with high relevance

Official Debian packages with lower relevance

Debian packages in contrib or non-free

Packaging has started and developers might try the packaging code in VCS

Unofficial packages built by somebody else

No known packages available but some record of interest (WNPP bug)

No known packages available

Official Debian packages with high relevance

Official Debian packages with lower relevance

Debian packages in contrib or non-free

Packaging has started and developers might try the packaging code in VCS

No known packages available

Official Debian packages with high relevance

Official Debian packages with high relevance

Official Debian packages with lower relevance

Debian packages in contrib or non-free

Packaging has started and developers might try the packaging code in VCS

Official Debian packages with high relevance

Official Debian packages with lower relevance

Packaging has started and developers might try the packaging code in VCS

Official Debian packages with high relevance

Official Debian packages with lower relevance

Packaging has started and developers might try the packaging code in VCS

Official Debian packages with high relevance

Official Debian packages with lower relevance

Official Debian packages with high relevance

Official Debian packages with high relevance

Official Debian packages with lower relevance

Packaging has started and developers might try the packaging code in VCS

Official Debian packages with high relevance

Official Debian packages with lower relevance

Debian packages in experimental

Packaging has started and developers might try the packaging code in VCS

No known packages available but some record of interest (WNPP bug)

No known packages available

Official Debian packages with high relevance

Official Debian packages with lower relevance

Official Debian packages with high relevance

Official Debian packages with lower relevance

Debian packages in contrib or non-free

Packaging has started and developers might try the packaging code in VCS

Unofficial packages built by somebody else