Debian Science Project
Summary
Bugs of task numericalcomputation
Total bugs: 162
Open bugs: 145
Fixed bugs: 17
Links to other tasks
Tasks overview
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Legend
SeverityDependentSuggested
critical 0 0
grave 0 0
serious 12 1
important 25 7
normal 55 5
minor 19 1
wishlist 18 2

Summary bugs page of task Numerical computation

Immediately looking into bugs of the dependencies of this task is advised (1348)*

Open bugs in dependent packages

12 serious, 25 important, 55 normal, 19 minor, 18 wishlist
calculix-ccx (1) Homepage: http://www.calculix.de Vcs Debian Science Maintainers
1089784 calculix-ccx: uninstallable since transition to openmpi version 5
calculix-cgx (3) Homepage: http://www.calculix.de Vcs Debian Science Maintainers
959695 calculix-cgx: freeglut (cgx): Menu manipulation not allowed while menus in use.
1043706 calculix-cgx: Fails to build source after successful build ftbfs, sid, trixie
1077425 calculix-cgx: FTBFS: ptrList.h:218:21: error: assignment of member ‘delObj’ in read-only object ftbfs, sid, trixie
ceres-solver (1) Homepage: http://ceres-solver.org Vcs Debian Science Team
1059953 libceres3: ceres-solver built without CUDA support
clblas (2) Homepage: https://github.com/clMathLibraries/clBLAS Vcs Debian Science Maintainers
949767 clblas: *gemm wrong answers in out-of-order queues bookworm, bullseye, experimental, sid, trixie
1095725 Should clblas be removed from unstable?
coinor-symphony (5) Homepage: https://projects.coin-or.org/SYMPHONY Vcs Debian Science Team
716368 [Mayhem] Bug report on coinor-libsymphony0: symphony crashes with exit status 139
773273 error when using SYMPHONY libraries in testing/unstable with clang
941172 /usr/bin/symphony: please compile symphony with USE_GLPMPL
1068745 coinor-symphony: FTBFS with coinutils 2.11.10 experimental, ftbfs, sid, trixie
1094130 coinor-symphony: FTBFS: dh_auto_test: error: make -j8 test "TESTSUITEFLAGS=-j8 --verbose" VERBOSE=1 returned exit code 2 ftbfs, sid, trixie
deap (1) Homepage: http://deap.gel.ulaval.ca/doc/default/ Vcs Debian Python Team
1085536 deap: Python SyntaxWarning
esys-particle (4) Homepage: https://launchpad.net/esys-particle Vcs Debian Science Maintainers
946206 esys-particle: autopkgtest times out when module import fails
1044644 esys-particle: Fails to build source after successful build ftbfs, sid, trixie
1092110 esys-particle: autopkgtest failure in Ubuntu
1096589 esys-particle: ftbfs with GCC-15 forky, sid
gnudatalanguage (3) Homepage: https://github.com/gnudatalanguage/gdl Vcs Debian Astronomy Team
753618 wishlist: gnudatalanguage-nox package
877294 gnudatalanguage: gdl segfaults while running testsuite upstream
976912 coyote: FTBFS on ppc64el (arch:all-only src pkg): Magick: abort due to signal 6 (SIGABRT) "Abort"... bullseye, ftbfs, sid
guiqwt (2) Homepage: https://github.com/PierreRaybaut/guiqwt Vcs Debian Science Maintainers
1035265 guiqwt: please add autopkgtests (to add coverage for python3-numpy)
1085632 guiqwt: Python SyntaxWarning
ipython (2) Homepage: https://github.com/ipython/ipython Vcs Debian Python Team
955775 ipython3: entry_points not working with virtualenvwrapper
1063528 calling less PAGER a second time after resizing the terminal does not use new size
lammps (1) Homepage: https://lammps.sandia.gov/ Vcs Debian Science Maintainers
1082818 lammps: enable AMD GPU support
liggghts (1) Homepage: https://www.liggghts.com/ Vcs Debian Science Maintainers
1048092 liggghts: Fails to build source after successful build ftbfs, sid, trixie
lmfit-py (1) Homepage: https://lmfit.github.io/lmfit-py/ Vcs Debian Science Maintainers
1081573 python-lmfit-doc: regression: absence of matplotlib code hyperlinks
matplotlib (10) Homepage: http://matplotlib.org/ Vcs Debian Python Team
377271 duplicate copy of agg shipped and used
604402 python-matplotlib-data: includes local copies of fonts
796905 python3-matplotlib: Matplotlib startup feels extremely slow
797918 python3-matplotlib: Matplotlib startup feels extremely slow
803411 MathTextParser('Agg') causes a ZeroDivisionError on s390x
977469 matplotlib: Please make package bootstrappable
994079 python3-matplotlib: TkAgg backend emits errors on savefig() with tight option
1065124 python3-matplotlib: produces nondeterministic SVG plot output fixed-upstream, upstream
1074159 matplotlib: old system version blocks doc build for new version
1074212 matplotlib: build-time test failure is ignored
metis (4) Homepage: http://glaros.dtc.umn.edu/gkhome/metis/metis/overview Vcs Debian Science Maintainers
855241 libmetis-dev: missing libmetis.a
961183 metis: providing a 64-bit build
1040985 metis: New upstream release (v5.2.1, 2022 Dec 5)
1047473 metis: Fails to build source after successful build ftbfs, sid, trixie
numpy (8) Homepage: http://www.numpy.org/ Vcs Debian Python Team
524073 python3-numpy: please split BLAS/LAPACK support into an optional package moreinfo
975546 Please, support multiple flavor of numpy for different use cases.
1023339 Package numpy and matplotlib for PyPy3
1078861 python3-numpy: f2py does not link object files correctly when building extension modules
1087777 python-numpy-doc: Broken style
1099078 dh_numpy3 should emit ABI dependencies only when necessary
1099480 python3-numpy: Bug still present in testing/unstable versions tested manually.
1099657 python3-mathgl not installable because python3-numpy-abi9 not provided by python3-numpy
octave (14) Homepage: https://www.octave.org/ Vcs Debian Octave Group
565216 octave: add support for loading HDF5 created outside Octave fixed-upstream, upstream, wontfix
598059 octave3.2: axis equal/square incorrect for gnuplot 4.4 fixed-upstream, upstream, wontfix
675509 octave: FLTK graphics backend not compatible with --no-line-editing option upstream, wontfix
741097 octave: nox package of Octave
783624 octave: Bad plotted data against time with long arrays confirmed, upstream
913638 Please, Depends: info-browser | info wontfix
921207 octave: gives wrong results when used with MKL
933300 liboctave-dev should not depend on a toolchain wontfix
954858 octave: GL warning 1.3 not suported
978029 octave: unable to load appropriate font
998842 octave: inv() causes segfault if io package pre-loaded
1061644 octave-dev: The package should include an ld.so.conf fragment pointing to the shared libraries confirmed
1082580 octave: does not find nvector/nvector_serial.h from sundials 7
1097497 octave: ftbfs with GCC-15 forky, sid
pplpy (1) Homepage: https://gitlab.com/videlec/pplpy Vcs Debian Science Team
1056832 pplpy: ftbfs with cython 3.0.x sid, trixie
pysph (3) Homepage: https://github.com/pypr/pysph Vcs Debian Science Maintainers
1083586 pysph: (build-)depends on deprecated module python3-pkg-resources pending, sid, trixie
1084148 FTBFS: tests abort in pysph/base/tests/test_nnps.py ftbfs
1085828 pysph: Python SyntaxWarning fixed, pending
python-csa (2) Homepage: https://github.com/INCF/csa Not maintained in Vcs Mikael Djurfeldt
1035218 python-csa: please add autopkgtests (to add coverage for python3-numpy)
1036518 python-csa: please add autopkgtests (to add coverage for python3-matplotlib)
python-escript (5) Homepage: https://github.com/esys-escript/esys-escript.github.io Vcs Debian Science Maintainers
1035226 python-escript: please add autopkgtests (to add coverage for python3-numpy)
1041187 does not respect compilation flags from dpkg-buildflags
1085909 python-escript: Python SyntaxWarning
1089841 python-escript: Drop line with true in debian/rules
1096223 python-escript: FTBFS: ImportError: cannot import name 'griddata' from 'matplotlib.mlab' (/usr/lib/python3/dist-packages/matplotlib/mlab.py) ftbfs, sid, trixie
python-sparse (3) Homepage: https://github.com/pydata/sparse Vcs Debian Python Team
1055847 python-sparse: autopkgtest regression on arm64 and s390x
1058485 python-sparse: please (temporarily) drop python3-numba dependencies
1071811 python-sparse: FTBFS: INTERNALERROR> pluggy._manager.PluginValidationError: unknown hook 'pytest_cmdline_preparse' in plugin <module 'tests.conftest' from '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sparse/build/tests/conftest.py'> ftbfs
python-xarray (4) Homepage: https://xarray.pydata.org/ Vcs Debian Science Maintainers
1053718 python3-xarray: xarray reports version 999 because the importlib.metadata is using the fallback version
1064326 python-xarray: intermittent hang in test_roundtrip_coordinates
1064368 python-xarray: intermittent segfault in test_open_mfdataset_manyfiles[netcdf4-20-True-*-5]
1064370 python-xarray: intermittent fail in TestOpenMFDatasetWithDataVarsAndCoordsKw
r-base (14) Homepage: http://www.r-project.org/ Vcs Dirk Eddelbuettel
702354 Useless (and possibly undefined) conversion from double to enum
710289 r-base-core: Partial upgrades from wheezy to jessie are broken
752609 r-base-dev: Please provide a method to run upstream unit tests at package build time
812544 r-base: FTBFS in a clean sid pbuilder enviromwent
861636 FTBFS when sources imported into git
862112 r-base-dev: Generate reproducible output independently of the build path patch, upstream
888399 r-base-core: [m68k] bogus "missing value where TRUE/FALSE needed" errors upstream
916773 r-base: CRAN packages fail to install.
928653 r-base: change R_LIBS_USER default location
982465 r-base: dyn.load not useful for system libraries
1036308 r-base: R CMD check --as-cran fails for packages with math in help files
1045790 r-base: Fails to build source after successful build ftbfs, sid, trixie
1073061 r-base: CVE-2024-27322 execution of arbitrary code security, upstream
1089835 r-base-dev: Drop simple-patchsys.mk from r-cran.mk
resampy (1) Homepage: https://github.com/bmcfee/resampy Vcs Debian Python Team
1058487 resampy: please (temporarily) drop python3-numba dependencies
scilab (7) Homepage: https://www.scilab.org Vcs Debian Science Team
712781 src:scilab: please use SLICOT Debian package instead of embedded copy help
747211 scilab: Allow scilab gui to start without opengl
984799 scilab-full-bin for armhf and i386
988426 scilab,scilab-cli,scilab-test: metapackages uninstallable on 32-bit architectures wontfix
989364 scilab: Multiple security issues in ezxml security
1014391 scilab: CVE-2022-30045 incorrect memory handling in ezml support leading to a heap out-of-bounds read security
1097854 scilab: ftbfs with GCC-15 forky, sid
scipy (2) Homepage: https://www.scipy.org/ Vcs Debian Python Team
1083172 scipy: python-scipy-doc is broken
1088105 python-scipy-doc: Broken style
sfepy (4) Homepage: https://sfepy.org Vcs Debian Science Maintainers
1046788 sfepy: Fails to build source after successful build ftbfs, sid, trixie
1056887 sfepy: ftbfs with cython 3.0.x ftbfs, sid, trixie
1086578 sfepy FTBFS with Python >= 3.12: ModuleNotFoundError: No module named 'numpy.distutils' ftbfs, sid, trixie
1087083 sfepy: Python SyntaxWarning
spyder (4) Homepage: https://github.com/spyder-ide/spyder Vcs Debian Science Maintainers
1028637 Spyder stops showing indent guides after restart
1037029 spyder: Saving files window does not respect current active Gnome dark mode
1069806 spyder: half hidden titles in "configuration per file" window
1070485 spyder: fails with pytest 8 due to dependency on pytest-lazy-fixture upstream
suitesparse (1) Homepage: http://suitesparse.com Vcs Debian Science Team
989550 suitesparse: enhance 64-bit support in suitesparse
sundials (5) Homepage: https://www.llnl.gov/CASC/sundials/ Vcs Debian Science Team
950574 sundials: Should ship pkgconfig files
998184 libsundials-sunlinsol2: dependency on certain flavor of libsundials-nvecparallel
1015672 sundials: ftbfs with LTO (link time optimization) enabled sid, trixie
1026947 libsundials-dev: Provide pkg-config files
1082085 libsundials-dev: sundials_config.h sets SUNDIALS_MPI_ENABLED=1 even for serial jobs
toon (1) Homepage: https://www.edwardrosten.com/cvd/toon.html Vcs Debian Science Maintainers
1047170 toon: Fails to build source after successful build ftbfs, sid, trixie
toulbar2 (2) Homepage: http://www.inra.fr/mia/T/toulbar2 Vcs Debian Science Maintainers
1046877 toulbar2: Fails to build source after successful build ftbfs, sid, trixie
1080187 toulbar2: FTBFS with doxygen 1.12.0 ftbfs
vitables (3) Homepage: http://vitables.org/ Vcs Debian Science Maintainers
1035267 vitables: please add autopkgtests (to add coverage for python3-numpy)
1087167 vitables: Python SyntaxWarning
1095399 vitables: FTBFS: E AttributeError: module 'numpy' has no attribute 'VisibleDeprecationWarning' ftbfs, sid, trixie
xtensor (2) Homepage: https://github.com/xtensor-stack/xtensor Vcs Debian Science Maintainers
1053090 libxsimd-dev: arm64 error in xtensor: usage of batch type with unsupported type
1061243 needs update for xsimd 13 upstream
yorick (2) Homepage: http://yorick.sourceforge.net Vcs Debian Science Maintainers
580524 SIGFPE not catchable on MIPS without an FPU wontfix
918711 yorick-full makes all yorick RC buggy too easily

Open bugs in suggested packages

1 serious, 7 important, 5 normal, 1 minor, 2 wishlist
cubature (1) Homepage: https://github.com/stevengj/cubature Vcs Debian Science Team
1044380 cubature: Fails to build source after successful build ftbfs, sid, trixie
evolver (2) Homepage: https://facstaff.susqu.edu/brakke/evolver/evolver.html Vcs Debian Science Maintainers
930206 evolver FTCBFS: does not pass cross tools to make patch
1096598 evolver: ftbfs with GCC-15 forky, sid
matlab-support (7) Homepage: Vcs Debian Science Maintainers
655471 matlab-support: Missing dependency on libXpm4
702637 matlab-support: fails to install in clean chroot wontfix
702658 matlab-support: uninteruptable prompt on installation with readline
702832 matlab-support: source in main even though it depends on non-free matlab wontfix
713938 set MATLABPATH to point to system-wide location
891632 matlab-support: dpkg-preconfigure with DEBIAN_FRONTEND=noninteractive can hang because of endless loop
1002486 matlab-support: endless loop during interactive install
metis-edf (2) Homepage: http://glaros.dtc.umn.edu/gkhome/metis/metis/overview Vcs Debian Science Team
792036 [libmetis-edf-dev] missing metis.h
1066955 metis-edf: FTBFS with -Werror=implicit-function-declaration ftbfs, sid, trixie
neartree (1) Homepage: https://neartree.sourceforge.net/ Vcs Debian Science Maintainers
1097441 neartree: ftbfs with GCC-15 forky, sid
python-threadpoolctl (1) Homepage: https://github.com/joblib/threadpoolctl Vcs Debian Science Maintainers
1001578 Missing egg-info folder
spyder-kernels (1) Homepage: https://github.com/spyder-ide/spyder-kernels Vcs Debian Science Maintainers
1028430 spyder-kernels: flaky autopkgtest: test_dask_multiprocessing AssertionError
stopt (1) Homepage: https://gitlab.com/stochastic-control/StOpt/ Vcs Debian Math Team
1097940 stopt: ftbfs with GCC-15 forky, sid

Done bugs

compyle (1) Homepage: https://github.com/pypr/compyle Vcs Debian Science Maintainers
1070919 compyle: FTBFS in bullseye bullseye, ftbfs
liggghts (1) Homepage: https://www.liggghts.com/ Vcs Debian Science Maintainers
1091874 liggghts: flaky autopkgtest on ppc64el: times out
matplotlib (3) Homepage: http://matplotlib.org/ Vcs Debian Python Team
1078759 python3-matplotlib: Add gir1.2-gtk-4.0 to Suggests field
1083475 matplotlib: (build-)depends on deprecated module python3-pkg-resources sid, trixie
1095355 matplotlib: FTBFS: AttributeError: 'numpy.float64' object has no attribute 'convert_to' ftbfs, sid, trixie
numpy (5) Homepage: http://www.numpy.org/ Vcs Debian Python Team
877754 NaN -> datetime = 0 (not NaT) on arm* fixed-upstream
1076236 python3-numpy: python3-numpy doesn't support cross-building well
1095468 numpy: FTBFS: Cherry-pick upstream patch to fix build error in _core/src/highway ftbfs, patch
1097126 numpy: FTBFS on i386: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.12 3.13" returned exit code 13 ftbfs, pending, sid, trixie
1098365 python3-numpy: f2py does not look for fortranobject.c src in multiarch libdir
pysph (1) Homepage: https://github.com/pypr/pysph Vcs Debian Science Maintainers
1070950 pysph: FTBFS in bullseye bullseye, ftbfs
r-base (1) Homepage: http://www.r-project.org/ Vcs Dirk Eddelbuettel
1097763 r-base: ftbfs with GCC-15 forky, sid
scipy (1) Homepage: https://www.scipy.org/ Vcs Debian Python Team
1078977 python3-scipy is wrongly marked Multi-Arch: foreign patch
yade (3) Homepage: https://yade-dem.org/doc/ Vcs Debian Science Maintainers
1036578 python3-yade: does not ship a python module
1091514 yade FTBFS with Python 3.13 as default fixed-upstream, ftbfs, sid, trixie, upstream
1092085 yade ftbfs with Python 3.13 as the default fixed-upstream, ftbfs, sid, trixie, upstream
zarr (1) Homepage: https://github.com/zarr-developers/zarr-python Vcs Debian Science Maintainers
1099299 zarr: FTBFS: zarr/tests/test_core.py ...................................Fatal Python error: Aborted ftbfs, sid, trixie
*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:
critical10
grave10
serious10
important5
normal3
minor1
wishlist0
Last update: Tue, 11 Mar 2025 18:19:40 -0000