Debian Science Project
Summary
Data Management
Debian Science Data Management-pakker

Denne metapakke vil installere pakker til at assistere med datahåndteringsopgaver, såsom indhentelse af data fra eksterne ressourcer, holde data under versionskontrol etc.

Description

For a better overview of the project's availability as a Debian package, each head row has a color code according to this scheme:

If you discover a project which looks like a good candidate for Debian Science to you, or if you have prepared an unofficial Debian package, please do not hesitate to send a description of that project to the Debian Science mailing list

Links to other tasks

Debian Science Data Management packages

Official Debian packages with high relevance

datalad
??? missing short description for package datalad :-(
Versions of package datalad
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trixie1.1.3-2all
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datalad-container
DataLad-udvidelse til arbejdet med containermiljøer
Maintainer: Yaroslav Halchenko
Versions of package datalad-container
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bookworm1.1.9-1all
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License: DFSG free

Denne udvidelse forbedrer DataLad (http://datalad.org) til arbejdet med beregningscontainere.

git-annex
Håndter filer med git, uden at tjekke deres indhold ind i git
Versions of package git-annex
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sid10.20240927-1armhf
bookworm-backports10.20240129-1~bpo12+1armel
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bullseye8.20210223-2amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
buster-backports8.20200330-1~bpo10+1amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x
buster7.20190129-3amd64,arm64,armhf,i386
stretch-backports7.20190129-2~bpo9+1amd64,arm64,armel,armhf,i386,mips64el,ppc64el,s390x
stretch-backports7.20181211-2~bpo9+1mips
stretch-backports6.20180913-1~bpo9+1mipsel
sid10.20241031-1amd64,arm64,armel,i386,mips64el,ppc64el,riscv64,s390x
jessie5.20141125+deb8u1amd64,armel,armhf,i386
trixie10.20240927-1amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x
bookworm-backports10.20240430-1~bpo12+1amd64,arm64,armhf,i386,mips64el,mipsel,ppc64el,s390x
stretch6.20170101-1+deb9u2amd64,arm64,i386,mips,mips64el,mipsel,ppc64el,s390x
stretch-security6.20170101-1+deb9u1amd64,i386
jessie-security5.20141125+oops-1+deb8u2amd64,armel,armhf,i386
Debtags of package git-annex:
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Git-annex tillader håndtering af filer med git, uden at lagre filindholdet i git. Programmet kan synkronisere, lave sikkerhedskopi og arkivere dine data, lokalt eller på nettet. Kontrolsummer og kryptering holder dine data sikre. Hent kraften og den distribuerede natur i git til dine store filer med git-annex.

Programmet kan lagre store filer på mange steder, fra lokale harddiske til et stort antal skytjenester, inklusive S3, WebDAV og rsync, med et stort antal skyleverandører via udvidelsesmoduler. Filer kan lagres krypteret med gpg, så at skyleverandøren ikke kan se dine data. Git-annex holder styr på hvor hver fil er lagret, så den ved hvor mange kopier, der er tilgængelige, og har mange faciliteter til at sikre at dine data bevares.

Git-annex kan også bruges til at holde en mappe i synkronisering mellem computere, ved at holde øje med hvornår filer ændres og automatisk sende dem til git og overføre dem til andre computere. Netprogrammet for git-annex gør det nemt at opsætte og bruge git-annex på denne måde.

The package is enhanced by the following packages: elpa-git-annex elpa-magit-annex
Screenshots of package git-annex
hdf5-filter-plugin
Eksterne filtre for HDF5 - LZ4, BZip2, Bitshuffle
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Den eksterne filtermekanisme introduceret med HDF5 1.8.12 tillader at programmer kan udnytte tilpassede filtre ikke indeholdt af HDF5-grundbiblioteket uden at kompilere dit program igen. Denne pakke tilbyder eksterne filtre for HDF5 for

  • Lz4-kompressionalgoritmen
  • BZip2-kompression
hdf5-filter-plugin-blosc-serial
Blokering, blanding og kompressionsbibliotek uden kvalitetstab
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sid0.0~git20220616.9683f7d-5amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x
upstream0.0~git20240808.b108ad1
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Denne pakke indeholder et filter for HDF5, der bruger Blosc-kompressoren. Ved at installere dette filter, så kan du læse og skrive HDF5-filer med Blosc-komprimerede datasæt.

hdf5-filter-plugin-zfp-serial
Kompressionsudvidelsesmodul for HDF5-biblioteket via ZFP-kompression
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H5Z-ZFP er et kompressionsfilter for HDF5 via ZFP-kompressionsbiblioteket, der understøtter kompression med og uden kvalitetstab for kommatal og heltal for at møde bithastighed, nøjagtighed og/eller præcisionsmål.

nexus-tools
NeXus scientific data file format - applications
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trixie4.4.3-6amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x
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jessie4.3.2-svn1921-2amd64,armel,armhf,i386
bullseye4.4.3-5amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
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NeXus is a common data format for neutron, X-ray, and muon science. It is being developed as an international standard by scientists and programmers representing major scientific facilities in Europe, Asia, Australia, and North America in order to facilitate greater cooperation in the analysis and visualization of neutron, X-ray, and muon data.

This is the package containing some applications for reading and writing NeXus files.

plfit
Tilpasning af power-law-distributioner til empiriske data - grænseflader
Versions of package plfit
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upstream1.0.0
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Programmet plfit tilpasser power-law-distributioner til empiriske (diskrete eller sammenhængende) data, jævnfør metoden fra Clauset, Shalizi og Newman [SIAM Review 51, 661-703 (2009)].

Denne pakke tilbyder to kommandolinjeredskaber, plfit og plgen.

The package is enhanced by the following packages: plfit-doc
python3-jdata
JData-koder/afkoder for Python 3
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JData-specifikationen (https://github.com/fangq/jdata/) definerer en simpel sproguafhængig annotationsgrænseflade for data målrettet lagring og deling af komplekse datastrukturer på tværs af forskellige programmeringssprog såsom MATLAB, JavaScript, Python etc. Ved at bruge JDATA-formater kan komplekse Pythonstrukturer kodes som et »dict«-objekt, der nemt kan serialiseres som JSON/binær JSON-fil og dele sådanne data mellem programmer i forskellige sprog.

python3-mdp
Modulært værktøjssæt for databehandling
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Databehandlingsramme til Python for bygning af komplekse databehandlingsprogrammer ved at kombinere udbredte algoritmer for maskinlæring til datakanaler og netværk. Implementerede algoritmer inkluderer: Principal Component Analysis (PCA), Independent Component Analysis (ICA), Slow Feature Analysis (SFA), Independent Slow Feature Analysis (ISFA), Growing Neural Gas (GNG), Factor Analysis, Fisher Discriminant Analysis (FDA) og gaussiske klassifikationer.

The package is enhanced by the following packages: python3-sklearn
python3-nxs
NeXus scientific data file format - Python 3 binding
Versions of package python3-nxs
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NeXus is a common data format for neutron, X-ray, and muon science. It is being developed as an international standard by scientists and programmers representing major scientific facilities in Europe, Asia, Australia, and North America in order to facilitate greater cooperation in the analysis and visualization of neutron, X-ray, and muon data.

This is the package containing the Python 3 bindings.

python3-pyzoltan
Wrapper for the Zoltan data management library
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bullseye1.0.1-2+deb11u1amd64,arm64,ppc64el,s390x
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PyZoltan is as the name suggests, is a Python wrapper for the Zoltan data management library.

In PyZoltan, only specific routines and objects are wrapped. The following features of Zoltan are currently supported:

  • Dynamic load balancing using geometric algorithms
  • Unstructured point-to-point communication
  • Distributed data directories
virtuoso-opensource
database med høj ydelse
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trixie7.2.12+dfsg-1all
bookworm7.2.5.1+dfsg1-0.3all
bullseye7.2.5.1+dfsg1-0.1all
buster6.1.6+dfsg2-4all
sid7.2.12+dfsg-1all
upstream7.2.14
Debtags of package virtuoso-opensource:
rolemetapackage, program
works-withdb
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OpenLink Virtuoso er en objekt-relation SQL-database med høj ydelse. Den tilbyder transaktioner, en smart SQL-compiler, hot backup, SQL:1999-understøttelse, et kraffuldt stored-procedure sprog der understøtter serverside Java eller .NET, og mere. Den understøtter alle væsentlige grænseflader for datatilgang, inklusiv ODBC, JDBC, ADO.NET og OLE/DB.

Virtuoso understøtter SPARQL indlejret i SQL for forespørgsler til RDF-data gemt i sin database. SPARQL har fordel af understøttelse i motoren på lavt niveau, såsom SPARQL-opmærksomme type-casting regler og en dedikeret IRI-datatype.

Installer denne metapakke for den fulde programpakke som udgør Virtuoso OSE (»Open-Source Edition«)

visidata
Hurtigt undersøge kolonnedata i terminalen
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VisiData er et terminalredskab for flere formål til at undersøge, rense, restrukturere og analysere tabeldata. Kilder understøttet i øjeblikket er TSV, CSV, tekst med fast bredde, JSON, SQLite, HTTP, HTML, .xls og .xlsx (Microsoft Excel).

Official Debian packages with lower relevance

libnexus-dev
NeXus scientific data file format - development libraries
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bookworm4.4.3-5amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
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NeXus is a common data format for neutron, X-ray, and muon science. It is being developed as an international standard by scientists and programmers representing major scientific facilities in Europe, Asia, Australia, and North America in order to facilitate greater cooperation in the analysis and visualization of neutron, X-ray, and muon data.

This is the package containing the development libraries.

libnexus-java
NeXus scientific data file format - java libraries
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NeXus is a common data format for neutron, X-ray, and muon science. It is being developed as an international standard by scientists and programmers representing major scientific facilities in Europe, Asia, Australia, and North America in order to facilitate greater cooperation in the analysis and visualization of neutron, X-ray, and muon data.

This is the package containing the java libraries.

libplfit-dev
Tilpasning af power-law-distributioner til empiriske data - udvikling
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trixie0.9.6+ds-2amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x
bookworm0.9.4+ds-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el
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upstream1.0.0
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Programmet plfit tilpasser power-law-distributioner til empiriske (diskrete eller sammenhængende) data, jævnfør metoden fra Clauset, Shalizi og Newman [SIAM Review 51, 661-703 (2009)].

Denne pakke indeholder teksthovedfiler, statiske biblioteker og symbolske henvisninger som udviklere, der bruger biblioteket plfit, skal bruge.

The package is enhanced by the following packages: plfit-doc
python3-openpyxl
Python 3-modul til at læse/skrive OpenXML xlsx/xlsm-filer
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Openpyxl er et rent Python 3-modul til at læse/skrive Excel 2007 (OpenXML) xlsx/xlsm-filer.

Denne pakke indeholder selve modulet.

python3-opentsne
t-Distributed Stochastic Neighbor Embedding algorithm
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Modular Python implementation of t-Distributed Stochasitc Neighbor Embedding (t-SNE), a popular dimensionality-reduction algorithm for visualizing high-dimensional data sets. openTSNE incorporates the latest improvements to the t-SNE algorithm, including the ability to add new data points to existing embeddings, massive speed improvements, enabling t-SNE to scale to millions of data points and various tricks to improve global alignment of the resulting visualizations.

python3-plfit
Tilpasning af power-law-distributioner til empiriske data - Python
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upstream1.0.0
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Programmet plfit tilpasser power-law-distributioner til empiriske (diskrete eller sammenhængende) data, jævnfør metoden fra Clauset, Shalizi og Newman [SIAM Review 51, 661-703 (2009)].

Denne pakke indeholder et Pythonmodul.

The package is enhanced by the following packages: plfit-doc
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