PAN Blend Project
Summary
spectroscopy
Røntgen- og neutronspektroskopi

Denne metapakke vil installere alle røntgen fotoner og neutroner PAN-spektroskopi-pakkerne (XPS, ARPES, IXS ...).

Description

For a better overview of the project's availability as a Debian package, each head row has a color code according to this scheme:

If you discover a project which looks like a good candidate for PAN Blend to you, or if you have prepared an unofficial Debian package, please do not hesitate to send a description of that project to the PAN Blend mailing list

Links to other tasks

PAN Blend spectroscopy packages

Official Debian packages with high relevance

dmrgpp
Renormaliseringsgruppealgoritme for en tæthedsmatrix
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DMRGPP/DMRG++ er en implementering af renormaliseringsgruppealgoritmen for en tæthedsmatrix, der forsøger at finde laveste energi matrixprodukttilstandens bølgefunktion svarende til systemets samlede energi. DMRGPP indlejrer PsimagLite-værktøjet til at få koder til simuleringen af stærkt korrelerede elektroner.

Denne pakke indeholder den kørbare dmrg og hjælpeværktøjer, bygget via OpenBLAS.

etsf-io
Binære værktøjer til at kontrollere, sammenføje og læse ETSF-filer
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European Theoretical Spectroscopy Facility (ETSF) er et europæisk netværk dedikeret til at tilbyde understøttelse og tjenester for igangværende forskning i akademiske laboratorier, regeringslaboratorier og industrilaboratorier.

ETSF er opdelt i 7 områder, som hver tager sig af et specifikt videnskabeligt emne:

  • Optik
  • Spektroskopi for energitab
  • Kvantetransport
  • Spektroskopi for tid-løst
  • Spektroskopi for foto-emission
  • Vibrationel spektroskopi
  • Røngenspektroskopi

For at tillade adoption af dets anbefalinger om standardisering foreslår ETSF forskellige biblioteker og værktøjer, som implementerer eller bruger disse specifikationer, samt bredt anvendelige programstumper.

ETSF_IO er et bibliotek for F90-rutiner til at læse/skrive ETSF-filformatet. Denne pakke indeholder brugerværktøjerne til at:

  • kontroller overholdelse af filspecifikationerne
  • udtræk data fra filer
  • sammenføj flere filer fra parallelle kørsler, som angivet i specifikationerne
mantis-xray
Multivariate ANalysis Tool for x-ray Spectromicroscopy
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Spectromicroscopy combines spectral data with microscopy, where typical datasets consist of a stack of microscopic images taken across an energy range. Due to the data complexity, manual analysis can be time consuming and inefficient, whereas multivariate analysis tools not only reduce the time needed but also can uncover hidden trends in the data.

Mantis is Multivariate ANalysis Tool for Spectromicroscopy developed in Python by 2nd Look Consulting. It uses principal component analysis and cluster analysis to classify pixels according to spectral similarity.

pymca
Programmer og værktøjssæt for røntgenfluorescensanalyse - skripter
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PyMca er et sæt af programmer og Pythonbiblioteker for analyse af røntgenfluorescens spektre.

Programmerne inkluderet i denne pakke er:

  • edfviewer - vis og inspicer datafiler i ESRF-dataformatet
  • elementsinfo - viser elementspecifikke røntgendata
  • mca2edf - konverterer filer fra SPEC MCA-formatet til EDF
  • peakidentifier - Viser røntgenfluorescens toppe i et givent energiinterval
  • pymcabatch - jobtilpasning af spektra
  • pymcapostbatch - efterbehandling af jobtilpasningsresultater
  • pymca - interaktiv dataanalyse
  • pymcaroitool - billedværktøj til Region-of-interest (ROI)

PyMca-værktøjssættet kan læse datafiler i formaterne SPEC, ESRF-datafil (EDF), OMNIC, HDF5, AIFIRA og SupaVisio.

Dette er skripterne for pakken.

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python3-arpys
ARPES-dataanalyse (Angle Resolved PhotoEmission Spectroscopy)
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Samling af biblioteker, funktioner og værktøjer relateret til ARPES-dataindlæsning og analyse.

python3-codraft
Signal and image processing software
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CodraFT is a generic signal and image processing software based on Python scientific libraries (such as NumPy, SciPy or scikit-image) and Qt graphical user interfaces (thanks to guidata and guiqwt.

CodraFT stands for "CODRA Filtering Tool".

CodraFT is available as a stand-alone application or as an addon to your Python-Qt application thanks to advanced automation and embedding features.

python3-igor
Læs filer skrevet af WaveMetrics IGOR Pro
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Pythonfortolkere for Igor Binary Waves (.ibw) og Packed Experiment-filer (.pxp) skrevet af WaveMetrics' IGOR Pro-programmer.

python3-navarp
Navigationsværktøj for ARPES-data - Python 3
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NavARP tilbyder et navigationsværktøj for Angle Resolved Photoemission-spektroskopidata. NavARP er en følgesvend under ARPES-dataoptagelse (som i beamtime) og et sæt af dedikerede biblioteker, der hjælper med at få tal i høj udgivelseskvalitet.

Denne pakke installerer redskabet navarp for Python 3.

python3-orange-spectroscopy
Extends Orange to handle spectral and hyperspectral analysis
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Orange add-on for spectral data analysis. Provides spectra and hyperspectra plotting, interpolation, preprocessing (cutting, smoothing, normalization), and integration. Supports common spectral file formats.

Features

### Load and process data

  • Load the spectroscopy data
  • Preprocess and interpolate spectra
  • Integrate spectra
  • Average spectra
  • Performs Fast Fourier Transform

### Visualisation

  • Visually explore series of spectra
  • Plots 2D map of hyperspectra
python3-phonopy
Phonon-beregninger på harmoniske og kvasiharmoniske niveauer - Python 3
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Phonopy er en pakke udviklet i åben kildekode til phonon-beregninger på harmoniske og kvasiharmoniske niveauer.

Denne pakke indeholder Python 3-modulet.

python3-pyimagetool
Image Tool for multidimensional analysis (Python 3)
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Python Image Tool can be used to visualise analysis of data in microscopy (STM, SSM, optics), ARPES, XRD, or other multidimensional datasets on regularly gridded coordinates.

This package installs the module for Python 3 and an example helper script to create a writeable data cache.

python3-pymatgen
Python Materials Genomics for materials analysis
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Pymatgen (Python Materials Genomics) is a robust, open-source Python library for materials analysis. These are some of the main features:

1.Highly flexible classes for the representation of Element, Site, Molecule, Structure objects.

  1. Extensive input/output support, including support for VASP (http://cms.mpi.univie.ac.at/vasp/), ABINIT (http://www.abinit.org/), CIF, Gaussian, XYZ, and many other file formats.

  2. Powerful analysis tools, including generation of phase diagrams, Pourbaix diagrams, diffusion analyses, reactions, etc.

  3. Electronic structure analyses, such as density of states and band structure.

  4. Integration with the Materials Project REST API, Crystallography Open Database.

This package provides the pymtgen module for Python 3.

python3-spectral
Behandl hyperspektrale billeder
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Rent Pythonmodul til behandling af hyperspektrale billeddata (billedspektroskopidata). Det har funktioner til at læse, vise, manipulere og klassificere hyperspektrale billeder.

python3-xrstools
Røntgen Raman-plotværktøjer - Python 3
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Samling af værktøjer og Python 3-moduler til at udtrække og analysere røntgen Raman-plotdata (XRS) fra ID20 for European Synchrotron Radiation Facility.

XRS_wizard er udeladt indtil understøttelse er tilgængelig for Qt5.

Denne pakke installerer biblioteket for Python 3.

spview
Spektrumfremviser
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SPVIEW er et Javaprogram, der tillader grafisk tildeling af højopløste molekylære spektra. Det er muligt at indlæse, vise og manipulere eksperimentelle og simulerede spektra (XY ASCII- eller OPUS-format) samt stick-spektra i diverse formater (inklusive HITRAN-format).

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