Summary

Bugs of task mx

Total bugs: 93

Open bugs: 84

Fixed bugs: 9

Links to other tasks

Tasks overview

Coherent-diffraction 1 (0)

Control-systems 19 (180)

Control-systems-dev 19 (180)

Data-reduction-frameworks 307 (2898)

Data-reduction-frameworks-dev 8 (54)

Diffraction 25 (237)

Grazing-incidence 5 (36)

Imaging 238 (1907)

Laue 0 (0)

Machine-learning 41 (521)

Modelling 14 (141)

Mx 84 (673)

Mx-dev 1 (5)

Powder 12 (123)

Small-angle-scattering 13 (138)

Spectroscopy 12 (156)

Tomography 44 (455)

Xas 9 (78)

Legend

Severity	Dependent	Suggested
critical	0	0
grave	0	0
serious	3	0
important	15	2
normal	36	0
minor	8	0
wishlist	20	0

Summary bugs page of task Mx

Immediately looking into bugs of the dependencies of this task is advised (673)^*

Open bugs in dependent packages

3 serious, 15 important, 36 normal, 8 minor, 20 wishlist

apbs (1) Homepage: http://www.poissonboltzmann.org/ Vcs Debichem Team
1034627	apbs: compile with PBAM and PBSAM support
coot (2) Homepage: https://github.com/pemsley/coot Vcs Debian Science Maintainers
1072286	coot: add autopkgtest for coot executable	patch
1117743	coot: FTBFS: /usr/include/rdkit/GraphMol/Substruct/SubstructMatch.h:66:27: error: 'span' is not a member of 'std'	experimental, fixed-upstream, forky, ftbfs, sid
dials (2) Homepage: https://github.com/dials/dials Vcs Debian Science Maintainers
1088487	python3-dials: move from twitter-bootstrap{3,4} to bootstrap-html (v5)	upstream
1117996	dials: autopkgtest regression with scikit-learn 1.7.2
gnuplot (57) Homepage: https://gnuplot.sourceforge.net/ Vcs Debian Science Team
222883	gnuplot: load files and history	upstream
227645	Document how to plot compressed file	fixed-upstream, patch, upstream
248426	set terminal pdf doesn't work	fixed-upstream
273002	Can not type non-ascii characters	fixed-upstream, upstream
273245	gnuplot prevents additional axes in too many cases	upstream
305501	gnuplot: home/end keys don't work
404270	gnuplot: license violation
445811	gnuplot: default y2axis labels have different offset than y1axis labels (postscript)	upstream
479445	gnuplot: wrong line numbers for missing files reported during replot	fixed-upstream, upstream
540406	the wxt driver deserves its own package	patch
544666	completion works on filesystem object instead of gnuplot's commands	upstream, wontfix
596870	gnuplot: Can not type non-ascii characters	fixed-upstream, upstream
663211	gnuplot: Introduce arbitrary scaling for the (y) axis, broken bar charts
681646	gnuplot: somtimes forgets previous command (can't see it in history either)
705896	gnuplot-x11: gnuplot -persist core-dump without X11 DISPLAY	moreinfo, unreproducible
711139	gnuplot-qt: the grid doesn't work with the 'qt' terminal in -persist state	fixed-upstream
711141	gnuplot-qt: zooming doesn't work with the 'qt' terminal in -persist state	fixed-upstream
711142	zooming in a gnuplot terminal yields blank contents when there should be a part of a segment	fixed-upstream
720403	PDF and PS terminal output compress the second (and later) page(s) if text rotation is used
741074	gnuplot-nox: By default no plots (or error messages) are generated	fixed-upstream
743014	unwanted space in gnuplot tab autocomplete
743247	gnuplot: Running load destroys arguments from call	fixed-upstream, upstream
748400	gnuplot: Buffer overflow in epslatex terminal	fixed-upstream, upstream
748966	Excess argument in call to function int_error	fixed-upstream, upstream
750636	gnuplot doesn't work if $GNUTERM contains an unsupported terminal
755900	gnuplot.info has multiple copies of some nodes!
755903	Have to invoke gnuplot with two copies of same input file
757906	Dependency solution problems currently with gnuplog
761470	gnuplot-qt: please provide a desktop file and icons
762006	gnuplot-x11: incorrect tic positions with y2tics
764751	gnuplot-tex: Post-install scripts should run texhash
770189	gnuplot-qt error
834396	gnuplot-x11: assertion failure rotating splot with mouse
837869	gnuplot: autoscale on y axis buggy with smooth kdensity
841137	gnuplot5-qt: double free or corruption
844484	gnuplot-qt: "Warning: slow font initialization" + graph not displayed in the window
847995	gnuplot: segfault on plot, with wxt, and "Warning: Mismatch between the program and library build versions"
859206	gnuplot: Recompile with more parallel axes
868594	gnuplot: Link against GNU readline to insert non-ascii interactively
880450	gnuplot: bad right margin when xtics label are rotated and aligned
880999	gnuplot: Segfault with false formatted command input
884538	gnuplot-qt: corrupted double-linked list
901614	gnuplot: clipped line segments disappear
905102	gnuplot-doc: gnuplot.pdf does not have images
909649	gnuplot: out of range data in tikz terminal when scaling y with two decimals	fixed-upstream
914705	gnuplot: set title ... boxed is undocumented
914709	gnuplot: Mouse coordinates makes little sense in multiplot mode in wxt terminal
914713	gnuplot: set errorbars fullwidth breaks normal plots that use yerrorlines
942570	gnuplot: plot not updated with wxt/gtk3/gnome-shell/wayland
951406	gnuplot: "-" and two 'using' doesn't work in plot/splot
985248	gnuplot: format string bug in PS_load_fontfile()
989028	gnuplot.info: all the terminal types are missing because the build directory is not the source directory in Debian	patch, upstream
991686	gnuplot: invalid utf8 input via terminal
1019249	gnuplot-qt: 5.4.4 uninstallable
1099827	gnuplot: command line options -rv and -geometry are unrecognized
1101945	gnuplot: FTBFS if qt6-base-dev is also installed	ftbfs
1102921	gnuplot: Can not interact with the generated graphs
jmol (1) Homepage: https://jmol.sourceforge.net/ Vcs Debichem Team
872418	jmol: Weblinks in Help do not work
openbabel (10) Homepage: https://openbabel.org Vcs Debichem Team
588248	Provide library for static linkage (libopenbabel.a)
716203	[Mayhem] Bug report on openbabel: obminimize crashes with exit status 139
716567	[Mayhem] Bug report on openbabel: obprobe crashes with exit status 139
823890	python-openbabel: doc-base error: openbabel and pybel already define html format
850546	openbabel-gui: Please add a desktop file for obgui
1046720	openbabel: Fails to build source after successful build	forky, ftbfs, sid, trixie
1059277	openbabel: CVE-2022-37331 CVE-2022-41793 CVE-2022-42885 CVE-2022-43467 CVE-2022-43607 CVE-2022-44451 CVE-2022-46280 CVE-2022-46289 CVE-2022-46290 CVE-2022-46291 CVE-2022-46292 CVE-2022-46293 CVE-2022-46294 CVE-2022-46295	security, upstream
1073561	openbabel: FTBFS: failing tests test_tautomer_2[27]	forky, ftbfs, sid, trixie, unreproducible
1107330	openbabel: autopkgtest uses large amounts of memory
1116462	openbabel: CVE-2025-10994 CVE-2025-10995 CVE-2025-10996 CVE-2025-10997 CVE-2025-10998 CVE-2025-10999 CVE-2025-11000	security, upstream
povray (4) Homepage: http://www.povray.org Vcs Andreas Beckmann
507915	Povray unusable with non-ascii filenames
943557	povray: provide a povray-headless variant with fewer dependencies	help
943567	povray on m68k shows incorrect render statistics	help
1038542	povray: Depends on SDL 1.2	forky, sid, trixie
pymol (3) Homepage: https://www.pymol.org Vcs Debichem Team
709306	pymol: Crashes when running within xrdp/vnc (no 3D support)
765794	Race condition when running scripts in "stdin" mode
783653	pymol: Segmentation fault immediately after loading pdb
rasmol (1) Homepage: http://rasmol.org Vcs Debian Science Maintainers
1097771	rasmol: ftbfs with GCC-15	forky, ftbfs, sid
theseus (1) Homepage: http://www.theseus3d.org Vcs Debian Med Packaging Team
1105687	theseus: FTBFS with make --shuffle=reverse: ld: cannot find -ltheseus: No such file or directory	forky, ftbfs, sid, trixie

Open bugs in suggested packages

2 important

gemmi (2) Homepage: https://project-gemmi.github.io Vcs Debichem Team
1058868	gemmi: Please build shared library	patch
1082878	python3-gemmi: Please add the dist-info data's

Done bugs

apbs (1) Homepage: http://www.poissonboltzmann.org/ Vcs Debichem Team
1033528	apbs: autopkgtest regression: apbs_tester.py': [Errno 2] No such file or directory	bookworm, bookworm-ignore, patch, sid, trixie
cctbx (2) Homepage: https://github.com/cctbx/cctbx_project Vcs Debian Science Maintainers
1085414	cctbx: Python SyntaxWarning
1116719	cctbx: FTBFS with the nocheck build profile	forky, ftbfs, patch, sid
dials (2) Homepage: https://github.com/dials/dials Vcs Debian Science Maintainers
1112841	dials: FTBFS with CMake 4	forky, ftbfs, sid
1116728	dials: FTBFS with the nocheck build profile	forky, ftbfs, sid
gemmi (1) Homepage: https://project-gemmi.github.io Vcs Debichem Team
1116738	gemmi: FTBFS with the nocheck build profile	forky, ftbfs, sid
openbabel (2) Homepage: https://openbabel.org Vcs Debichem Team
1113350	openbabel: FTBFS with CMake 4	forky, ftbfs, sid
1116631	openbabel FTBFS on arm64 due to -Wl,--fatal-warnings	forky, ftbfs, patch, sid
raster3d (1) Homepage: http://www.bmsc.washington.edu/raster3d/raster3d.html Vcs Debian Med Packaging Team
1105671	raster3d: FTBFS with make --shuffle=reverse: Fatal Error: Cannot open module file âlists.modâ for reading at (1): No such file or directory	forky, ftbfs, sid, trixie

^*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:

critical	10
grave	10
serious	10
important	5
normal	3
minor	1
wishlist	0